Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT097632.1 TSA: Strongylocentrotus purpuratus WHL22.580667.0 mRNA sequence GCGGAGCAGCCCACTATACCCATGACGTCACAGATCTTATGACCTCCATTCGCGGACATATTGATACAAC TGTGAGAAAGTCGTCACAGATATTCCGACCAAAAACTGCGAATAGCATTGCGACAAAGCGCCACCAACAC TTGTAGACTGATTTTACAGTAATTTAGATTTTACAACTCTAGTACAACACAAGACACAACATGACTTCAA GAAAGAAGGTCCTTCTCAAGGTTATCATCCTTGGTGACAGTGGTGTTGGCAAGACTTCACTGATGAACCA GTATGTCAACAAGAAGTTCAGCAATCAGTACAAAGCAACCATTGGCGCAGATTTCCTAACAAAAGAAGTC ATGGTTGATGACAGATTTGTCACAATGCAGATATGGGATACCGCTGGTCAAGAGAGGTTTCAGAGCTTGG GCGTGGCCTTCTACAGGGGGGCAGACTGCTGCGTACTAGTCTTTGACGTCACGTCACCCAATTCTTTCAA ATCCCTGGACAGCTGGCGAGATGAGTTCCTGATCCAGGCCAGCCCACGAGACCCCGAGCACTTCCCCTTT GTCGTACTAGGCAACAAGGTCGACTTGGATAACAGAATTGTTTCTGCAAAGAGATCCCAAAGCTGGTGTG ACAGTAAAAACTCCATCCCTTACTTTGAGACGAGTGCAAAGGAGAGCATCAACGTGGAGCAGGCCTTCCA AACAATAGCCAAGAATGCCCTTGCACAAGAACCCGACGACTCAACGTACCAAGATTTCCCCAGCCAGATC AAACTCGATAACGACAACAAGGGCAAGACAGAAGGCTGCGCGTGCTGAGGACTGTGTACATCATATGATT TTTTTTCACCCTTATTTTATCTTTATTTCTTTTTTTTCCCTTATTCCTGGTAAATTTTTTTCTATTTATT TTTTATTCTGTTTTTTTTTCTCACTCTGTTTTGAGTTTTTTTTTTTTGTGGTGAAATGTTTGATATTTAA ATTTGGAGAATATAAGGCATTTCATGGAGATTTGTCCCAGCTGTAAATAGCTTCCCATTTAATCACCCTG ATGTGCCAGGCCTGAATTATATCTTTTCAATATCTCATGTTTACTCTCCCATTTCCTTTATATCATCATC TACTTATCAATATCACCTTTTTTCATTACTTTCCATGATCTCTTTCCAAAGGATAGGGTAAATAGCCTTT TAGGGGTCAGCCTGGCTTTCTGCTTATAGTTACTTTATTTTTGCCTTATGGTGATTTTTGTTTATAATCC TGGTGAACGTTACAAATAAACTGTTTAAAGGAGCATGAAATGAAGATTAAAGAATTACTTTTGAATGATT ATTTGAAAATAGGCGTGATTTACTTGCATCCATGAATTTACATCTAGAATTCAATCTTTATCTAGAATTG ATATTTGTGTTGTCAGTATGTATGTGTGTGTTGGGAAGCATATTTACAGCTGGGGAAACATTAACATGCA TTTTTACTTAGGCATGTAAAATGTTTTGTTTATTTTACCCCATTTAATGTGTCCTTTTGTATGATTACAT GTTATCTTGTAGAATAAATGTATACTCGTATAAAATGTTTTTTGGAGAGAAATCCTCATTCATTGGGAAT TTAACGAATGAGGGGAAAAATTGTTATGAAACAGCAAAAAAAGAAGAAAAAAAAGAAGAAAAAAATAGGC AAATTATATTATTATGAGGATTGTGTTGTGATATTGTAATTAATATTGCTGATAGGTTGTACAAAGCACT CATAACATTATGTACATGAATTGATAATGTGTTAAAGTGGATGACTGCAAAAAAAAGAATAAACATTTAT ATCAAGTACATGTAAGTACATTTGTAAAGGAATTTTGCCAGATTTTAATTTCCTCTCTTTCTCTATTCTC TGTCTGCACCATGATGGTGCATAATATGTCATTGGTGAGGAGAGAAACATGTCATTCCTTGGAAGGAGAT AAAACTGTATATTAGAGTATAGATAATCATCACTCCCTTTCTGCCTCCTTTAGTCTACCCAAATCACCCT GCCAGCAGTTTTTTGGAAGAAAAATGAATGGAAGACATATACAGATTTATGCAATCGAATGTGATGTAAA TTAATGAATGAAAAACAATAAAATATACTTAATACGTTTGTTAGGCAAATAATAAATACATGTATTGATA TATATCATCTTGCCTTTTGTGGGCCTGTCGCACAGTATGTTAGGATTTACTGTATCAAATTATTCCCCAT ATTAGGTGCTTTCCCGTTCCAAGGAGTCGATTTTGAATCGCGCTGGTGGTTTTCAAATTTTCATTTCTTC GATATAAGTTTGAGATAGAAAGTTTTCAGAAATATAACCCAATATAGACCTACTGAGACACACAAACTAT TGTATAACTCAAGTATTGCCTTAACTCTCTACCGTGAAGTTTATTCAACCTAAAACCATCAACAGAAGTC CAGTATTTTAAAATTCTTTGAAGGAATATTATAAGTGTTTTCTGTTCTTTGTTATTTTCCTCGCATATTG TACGGGAGAAGAAGAAATGGTCAGATGATTTTTATTGTGGGTTTTTTTTCTTCCTAGCACAGTTCTCTAG CAATTACAGAGTCGGGTTCAAGACATTAGCCAATAAAACTGGCTGTATTTCCCATGGAGATACATGCAGG TATCTGTTGACAAATTAAGACAAAGCTGTCTGAATGTAAATAAAATTGATTTTAAGAAAGAAAATAAAAG ATTGAAATCAGAGATCATAAAGAACAGAGTGTTGCCACAATGGGCAAGTGAAGATAGGTATATATGAATC AAGATTGAATGCACCGTATATATGCTCAGCCACTTCTTATTACTTTAATGTCAGTAGATGAGCTTCTTTT TTTTGTCTCCCTTTTATTTTTTTCATTTTATTTTGACATGGAATCATAGTCATGTATCTATCTTGGTACT TGCTAATCAGAATTGGGTACCTTCTGACTGAAGAGTGGTGCAATATGTGTTCAACCAGCGGAAACAAAGA ACACTTCAACTAATCTTTTAGAAGAGTTAGGATGTCATAAAATATTCACTTATACCTTTGAAAAGATTTA ATGAATCTATCTCTGTTCTTTGATTTTGTAATTTCTTGTCATTATTATGCAGAGAGTATGTGAGATAATG TTATTTATGAGCAAAAGAGTTTGATAAATTAACATTCCACTTCAATGTTGAAAGAGAAGATTATACTCCC ATTCAAATTATACCAAAAGACAAAAAGCTATAAACTGTTATAAGGATTGTCCATTAAAAACATACATACA TTTAGTATGCCATGGCTTTAATACCTAAGAATAATCAGTCTTATGGAAACCATTTCAGGAAAGGTTAGAC GTATGTCATACAACGGTAACAAAACGAGAGGACTGAGGGCTCTTGTGTATCTATTATTATAAAAAGAAAC CCAAACTTTTCCAGTAGTATGGTTAGCGTGATATATTTAGCCAACAAACATACCAAGTATGTCTAGTAAT TCTATGGTTTTAAGGGCTCTAGGATGTACTAATTTGTAGAAATTAATCTATACTATGCTGTTGTACAGAT AATGTGCTATATTGTATACTTAACATCAAATGAAGATTTAATTGTAATTTCTATGTTTGTACTTTCCCTG TGCTTTGCACAAACTAATTCAAATTGCCTCGTGTAGAGATACGTTTAAGCTATTTAAATTTAATTTTTCT GTTTTTTCAAGGGGGGATCCTGAAGAATGAGTATATTTCGATACAAAATAGATGCAAAGTTTACTACTAT TCAATAAAGGTATATAAGATTTTTTGACCTTATGTCGAGATGTAGAGGTTTGTATGCAAATGTTACTCAA AGCTGCCCTGTGTTACTAAGAGACCAGTTTTGAATCAATTTATTAAAATAATTATTGGAAGAATGTTTCC AATGACCATCATCATCGACCCCAAGCTGTCCTGACCCATTGCCTCTGACGATATGAAAGTCAACCTTTTG CTTACTTGCTTTGTATACACAGGGAGGATGTATAAATCTGGATTAAATAAAATTATGTAATAGTGAAAAA TACACAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds