Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041604430.1 PREDICTED: Lytechinus variegatus serine/threonine-protein kinase 11-interacting protein-like (LOC121411620), transcript variant X1, mRNA TCAATCTCGTGACTAAAAATAAATCAATGGACGTTCAACCTTTGTGTTGTTGTTTACTGAATTAATAAGC TGTTTGATACTCCGATCAAAATTTATTTCAGTCTCTATAGATGTGGATCTCGATGACTGAGGACCTTTGG TAACCTTGGTGTCATCATGGCCAGTTCGTCAGGGAATGCAGTCAACGTTTCTTCAGATCCTGTGGCAAGG CTTGCTGATTTCCTTAGACGGGGCAAGTCTGACATTAAGGTATTGACGGGAAAGAGTAAGCTGTCCCTGA CGACCGTCTATCTTTCCATACTGAACCGATGCTTCGCTACAACTCATCCCACTGATGACTCGACGGAGGT AGTGGATGGTGGAAAAAAATATGATGCAGAGTCCGTTAAATATCTAAGAGATGTTCTCCACAGGACATTA GGTTTAAAGTTACTTCATGAGAATGCTACTTTGAAAGGTGCTGTGGATGTATCACGTTTCCATGCGTTGA CGGTCCTAGAGGTCAAGCGAGTACCTGTCCATTTTTTAGTTGGTCTAGGCTCTCTCCGATCACAGCTCAG AGTGCTGATATGTTCCAGATGTGTCAATTCACTTCAGATGTTGTTGGTAGGATGTGGTGGAGATAAAGCA GACGAACAAGACTGGCCAGTATTACACACCCTAAACCTCAGTCATAACTACATTGATGCTCTGGATGAGT CATTGCGTTTCCTTCCTGCTTTGAAAGCACTGGACTTGAGCCATAATAATATCAGACACACAAGAGATTA CTTTGAGAGCCTCCCTGAGATCATCCATCTAAACTTGAGTTACAACCAGCTGTGGAGGGTACCTTCGCTG GGAGAGTTCATTCCATCTCATCTACAGACCTTGATCCTTCGAGGTAACAACATAGAAAGTCTCTCAGGTG TGGAGTACCTGGAGGACCTAGGAACCCTGGACCTTGCCAAGAACGCCATCTTTGACTCCTCAGAACTCTT CTCTTTGGGTTACCTGCATAGGCTGAGGAAGATGCACTTTGATGGTAATCCATTCACCTTTCAAAGCAAG TGGCGGTTGATGATTGCAAAATACCTACCACCAGAGGCAGCACAGTTAGTTACCTTTATTGATGACGTTC CTTTGACCAGAGCAGAGATACAACTTGTACCCAGAAAGGGCATCGTAAGACCTATGAGGCCGGAGTACCT CTCCGACAACTTCTCGGCTTCTCTCCGTTCCGAGATGTCATACGATAACCTGGAGGAATCGGTAGACCCC GAGGGAGGTCAGAAAAGGAGGAAGCAAAGGGTCAAAAGGTTATCTGCAAAGGTCAGGAATGCATCCATCA GCGAGCAGTCAGAGGACCAGAAACAGAAAGCTAGGAAGAGGCTGTCAGATACTGGTGTTAAATCATCCTC CAGCCCCAGGTCCACACCAGGAACCGATGCCAAGAAAGAGTTTGAGGATATTAGACAGATGCACGGCAAA GACTGGCTTCTGGCCCTTCACAACCCTTATGAGCCACTCTCCAAACCTCCTGGACATGTTAGCCAGACTA CTGAGCCACAGCGTAGTCCCACCAATGCTAAACTGGGTGATGTTAATGATGATGATGGATCAAGGACTAA CATTCAGGTGGATGTCCATGTTGAACAAGAGGGGTATTCAGATGGGCGTGGCCCTCCGGTGGTGGAGGTG GAGGAGGAGGTAGAGAAAACATCGATGCCAAGTGAAGAAAGCACCAGGGTGAATCCTGTAGATGGGGTCA GAGGTCAGGTCAATGGTCATGTGAAAGGTCAGGAAGATGAAGGTGTGAAGCAACTATCGAGGGAATCCTC GGAGCAGATTGACCTGTTGATGAGACAGGATTCCCAGCTCCAGGTTAGAATCAAAGATGGTGACTTGAAA GAAGAAGAGGACGATGATAAAGAGGAGGAAGATGATGGCATTGACCTGTGTGGCCCATTGCTGATCAGAC TGAACAAATCTGAACCACCAGTTCAACTCTTTGTCACCATCAAGGAAGCATTTATTGAAGAGAAAAACCT TTACGGCAAGGTTGTTCAGAGACTAGAAACAAAGAGTCTAATAGGAATGACAATGTCAATAGAAGAAATG CTTGATGAATTCAGCAACGCTCCTGTAGAGCTTCCTGTAGTGAAGCTCTCCTTTGACTACATCAACAAGG AACGTCGTAAGAGAGATTACGTCATGGAGGATATGAATACATGTGAATCCCTGATCAAAGTCCTGGAACC AATGATTGTCCTGAACGAGGCAAGTAAGACCAGGATCTTCTTACAGTGTCTGAAGTGTATGATGACATTC CCAAAGGAACAGGCTAAGAAGAGAGTTGAGAAGAAGCCGAAGAAGTCTGGGACGTGGACCTCTGAGGAAG AGAGCGGGAGTGATTTTGAGTCGGTCAGTGAAGTATTGACCTGTCCAAGCTGTGGTAGTAACCTTCTGCT AGAGGTCGATGACCCAAGGAGGTCAGAAGTCAACACACCTGTAGGGTCAGTGGCATCGGTTGACATGGCA GCCATGCCTATGGCTGCATCATCACCATGGAAACAAAAAAGAGAAGCGGATACCATCGTGGTAAGCCCAT CCAACAAACCCAGCCATTTGATAGACCCATCAGTCGACATTTTCTCCTCCAACTCCTCTGATCTCAGCTA CACCAAGAGTGCCTCGTCCACCCCTTCCCAGCTCTCACCGAAGAAAGACCGGACCAAGACGAACCTTAGT CCAGCCCATGGTCCAAGAGGCCAGGCGATTAGAGATCTGATGCAATCACCATCAAAAGATGGCTCATTGA CCTCGTCGCTGTCATCACAACATAGTGGAACAAGTTCAGATTTTAGGTTACCCGATCCAAGCATCAAGAT GGAAGTAACTGAAAGTAGTCCAGTGGAAGAGCTTGTCAACTACCCAAGAGAGAAACTCACCGAGCTACTT ACTACCAACAAGAAAGGTTTCAGGCAAAGCACCGAACAACCAAGCAGTACTTCCCAAAGGTACTCTCTCT GTCCCACTGATGGTGGGAGTGTATCTAGCATGGATGCCTCGGGACCTCCCACCCCTGTCCAACAAATCAC AACCAACCCCTTTGACTCACAATTCAAGAACTCTGCCATCAAGATGGACCCCTCGAGGACATCACCATCC CAGCTCCTCAACGGCAGTGCCAAGATATCCACTGATGAGTTTGATGGAGGAGGTGTCGTCGGAGCATCCC ATGAGGGCGAGGTTAGGACTAATGGAGAAAGTGATGATGTATTCAACCCCAGGGTTGATCATAGATACAG TGAGGATGATATTGTGGTGTTGCAGAACCCGGAAGCAGCAGCATCCAATCATAACATGGAATATAGGAAT GTCTTTCACCTACAAGATGGGCAACATCAAGACAAGGACTCCGTCTCCGTGGATGCTATCAGCGTCGGGC GTTTGGACAGCAACGAAAGCGACATAGCCGTGATAAGTGAAACGGACGCTCAAAGCAGTAACAGTGCGCT TGCATTGCTCAGGAACTCTAGCCTTGGGAATATCAGTGCCACATCAGATACTGTGTTTGAAAACAGTCAC CATGGCAATATCAGCAATGAGAATAGTGAAAGTCCTGCTCAGCAACGGCAGCAGACTTCTTCATCTGACG ATCACAGGGGCTTGCTGAGCTCCAATGAGCATGACGTTATCTATAAATCAAACTCTGGTTCTGAGAGTGC ATCTGAGGTCAATGGAAGTGGTCAGTGGAATGTTGGTGGTACTAACCATCCTGTAATCAAAAGAACGGTC CAATCTTCACCGTCTCATTCTATTAACTCAACTGAGACATCCATGTTATCAGTGGCTGAGGAGGATTGCT GTAGAGTAGATCACCGTATAAAGCTCTTCTTTTCCATGTCCGTCTTTGGCAATGAGGAAGAATTCACTTG TCTATTAAAGGGCACTGTGTTTCAGTTGAGCAAGAAGCAACATTTTGATGGTGTGGTGGTTGTATCAACA GATAGTATCTACCTCATGAAGATCACAAAAGAAGAAAGTGAGAACCCATCTGATTGGCTGGTTAAGAAAA CACAACATCCAATCAAGGACCTTGTTAGAATACATGTTGGTCTTGGAAGTCAGAGTATGCAGTTTGAATT CTCCTCCGATGGGATTCTATACACCGTTGTGATAGGAGACAAGAAGAGAATTAGACAGTTTGCTGCAGTT TTGATGAATTTAATCAGTACAAGTGCATGGAAGAAAAAGTTTAAAGGTGTTGTATGGGAGCATGCCCAGA CGTTTCTCAACCTGACCGATGAGGTGTTTGTCCCCCAGGCTACAGGGGATACAAGCTATGAGGTAGATCC TCAGATCACCGTCTTCATCACATCACAACTCAAGACAAGACTAGAAACGAAACAAGGTACAGAGATGAAA GTAGAGCCACTAGGTATCCTAGTAACCGCTACTGATATCTACCTGGTTGAAGAGAACCACTTCTATCCCT TAGCTCTTGGGAAGAACAAGAAGAGTGTCAAGGGTCAACATCAGTTCGTCCCAAAGGGTCATCGCAAGAT CAGTGATATCTCAGGACTGGAGTTGTATGGTGACTCTCCAACTGATGTGACGGTTTCATTCTTTAGTGAG GACACTGGTGAGGAATCTCAGTGGAACATCAGTACATCATCAGATGCATCGCTGGATCAACTTATAACGG CCATTAAGCAACCTTGGAAAGAGATGTTTGGTGTTAACATTCAAGAAACTCTTCATCCCTCTATCGCTAT CCAGGATTTAACGTGAAGTCTCCATGGAAACAGCCAAACAGATATTAACCATCATCATACTGACCACCCA AACTTCATCACTATCAGCTATGCCAGATGTCCAATCCATCTTTTTATTTACTTCTTATGTTTTATTAATA CCTTATAAGATAATTGAGATATTGTTATATTTTTCTACAATTTTCTTTCATCTGATTGGAGGAAGAGTAA AACACAGTTTTAGTAACACCTGTTAAGAAGGACCACCTGTCTGTTAAGACCACATATTTTGTTCCCTTAA ATATAATTCCCTAAAGTAAGAAAACCTGCTCATAAAGACCGCTTTTCTTGTCTCTCTTGGCTGGTGTATA TAAAATTATATATGTATATAAAATTTATAGTTGGGAGTATAATGCCATAAAGAAATTGAAATCATAGATT TGAAGAAAAAAAAACGAGCATAGCTTTCAAAAATGAAAGGTAAAGTCACATATATAACTATACTATATAT TTCTATCTTTCCCACAATTCAGGTTAGTAAACACCATGTATTATGATCATTTTAGGAGATAACAATAATA TTCTTGAATGACAGGGTTTACTCATTCTAGATGTTCTTGCTTTAAGTTTTTTTTTTAATAAGGAATCAAA TTCAAGAAAAACTGCTAATGCAGCCTTGATAGACGGATGAACCTTACAGACAGATGGTTGCTTACTTATT ATGCAATATTTTTGATGATCCATAAATGCTCTTTTCTTCGTTAGGAATTCATTTTTTTTTTCTAGTTATG TATTATTTGGAGAAGTATATGCATATTTTTAGTCAAGAAATGTCTTATTATATGAAGAGCTCTGTTTGAA AAAGTACTACATTTGTGCATTTGAAGAAAATTGAGCTTTTAAAATTATTGATATTCAGCTACAAATCTCT CTTTACACATAGCTTTCTACCCAAACTTTGAGAGCAATTAGATATAGAAAACTTCTGTACTGTCTTTTCA CAGCCAGTTTTTTTTAAAAAGAATATTATGAACTGCAATAATGTGCTGAAAATAACAGTTGTATTACTTT CTAGTATATGGCGATAAGGAATAAGCCACTCAAAATTTATTTCAAAACATTTCAAGTAAACAAATGCACT GTTCTTCTTTTTAGTGTTCTATGCAAACTGCTGATATATTTCTACTTTGCATTTTAATTCCTTTATTTAA CTTTGATATTTTCACTTGATTAAAATACTGCTTTATGCTCTGACAATGTTTACTAAATATTAAATTCTAC TTCTGACACAGACTGGGTAATGGGTGAATGAATTAAAAAATAAACAACC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds