Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991501.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC575378 (LOC575378), transcript variant X2, mRNA TGCTGATCATATGCATGCAGCCCGGTTTTGTTATTGTAGACACTGACTGCCTGACATTATATTATACTGG TAATGCTCATTGCCTGGTTGGTGGTGGCAGGATTCTTCGGCTCACGTTGTTAGCTCATATGCTGGTTGGT TGGTGTACGAAGAGAATTTACCTGTGCGACAGTTAGTTCATTCATTCATTCTGGAGTGTCGGTCGTGGTT GAACCATTAACCATTGGCTGCTGTAGGTGATCTCTGCCAGTGCTCTAGGAACCAAGAAATGGATATTATG AGGAATTATTTTAAACTGGATTAATCTTGTGAACTTGCCTGAGGAGTTCCTGCAATGCCATCATCCTCAG AAAACAGTATCCTTGTAAGTGATAATGATGATGAAGCTGAAGAAAGACTAAAAAGAGGATGTGAGAGCTT CTTCGCAATGAAGGGTGCAGCCATAGTCCTCCCGCACTCCAAAGATACCAAACGACCCATCAAAAAGCAC CCAGGTTCGGACCCCTCTTCCAGTCATTCCGCTACCCCTATCGAACTCAACCTCATCCCCTCCGGGCCCC CTCTTCCAGAAGCTCTGGTTGGAGAGTTGCAGCAGCATTTACAATGTATATTCTGGATCCTGAGGCCCGA GGACACCATCAAAATGGCTGTCAGACTGGAGTCATCCTCAGACAACACCATCCGTTACATGGTGCTGGTC TCCTGCTTGGATACGCATCAGAACACAGAGGAGACCATCATCCTGGGCATGGATATCATCCAGAACAAGG CCACCATCGGACTGGTCTTACCCATCTGGGCGGATAGCATCATCCAGATGGATGGAGATGGAGGATTCTC TGTGACGACGGGGGAGAAGATCAACGTCTTCAAGCCAGTCTCTATACAAGCCATGTGGTCAGCGTTGCAA GCCCTGTACAGAGCGTGCAACCTGGCCCGGGTGCACAACTACTTCATCGGAGGCCTTCACATGACGTGGA TCGGCTTCTACCAAAGCAGCGTCTCATCACCTTACTACTGTCTCAAGGAATGGGAGTATCTTCCAGACAT GACGTCCCCACAGAGTGATGAGATCAACTATCTATACCACAGAGACCGTCGCTACTGTCCTACAGAAGAT GAACTGATCAGAAGATTTATATTCGTCAAGTTAAAAGAAATCATGATTCAATGTGACCTTGAAACCGTTA CCTCAAAAATGGTCAGGATTAGTCTTGAAAAAGAGATAGGCAAGGAGTTGAAAGAGTACAAGCGATTCAT TGATAAACAGATCCTTCTTATCTGTGGCCAACTCGACTCTGCTTCAAAGATATTTGACCATATATACTTG GGATCTGAATGGAATGCGTCAGATCTTGATGAATTGGAGGAAAATGGAGTGGGCTACATCTTAAACATCA CCAAAGAATGCGATAACTTCTTCCCGGAACGTTTCAAGTATTGCAACATCCGCCTGTACGACGATGTGGA GGAAGACCTCTTGAATCACTGGAATACCACCTACCTCTTCCTCTCAAAAGCCAAAGAGGCAGGTTCCAAG GCTCTAGTTCACTGTAAGATGGGAATCAGTCGATCTGCTTCAACGGTGATAGCCTACGCCATGAAGGAGT ACGGGATGACCTTGGAGTATGCCTTGGACTTTGTCAAAGCGAAACGATCCATCATCAGACCAAACGATGC CTTCATGAAGCAGCTCCAAGTCTATGAGGGAATCCTAGAAGCAAGTCGTCAGAGACACACGATGTTCCGC AGTAAATCTGAGAGTTCCCTGAGTCGCAGTGAATCCGTGGAGTGCCTGGCAAGTGTCAAACCTCCTGAAT TCGGCAGCACTGAAGACCTCTCACCCCGAGGTATGCCGAGAAACAAGTCTTTCTCTGTTCGAGAGAGAAA GAAGAAGATAGAGGAGTTGGACTCACCCGAGGGTGCTGTTGGAGGACCATCATTCTTCATTGGACCGGAT CCAACTCACCTAGGAGCAGGAAAATATGTGATGGACACTGGTGAGCCATTGTGTGAGGGTGCTGTTGGTA ACGACCCTGGTGTCAGCGATTGCAACGATTTCCAGGTCTTAGTTCCCCCGACGGTCAGACCGAGCTCCAT CGTCAAACTGCAGAAGGAAGGGGCATTAGCCTTAGGGGATGTCCCTTTCGTTGTCGCGACTGAACCTGCG GCGTTGTCGTCTACAGTACTGTCCTCCTCTAAAGAGCCGGTGAGTAGTGAAGCGGACACTGTGGAAGGCT CTAGCATGGAAGATACCATGCTGAATACGAACAACAATAGTGCGAATGAACTCTCCTTAGACGGCTCTGA TGAGGATATGTACCAGAGGACAAGCGTCAAGTCAAAGGTCACTGAAATAGAAAGTAGTGTAATGGGCGCA ATGGACGCAACCGAAGAGGAAGGTGAGGGGGAAGGGGAAAGTGAAGTAGGGGCGTACAAGAGGGAGTCGA TCCCTTGGAATCCTGGAACAGTACTACGACAGAAGCAGGAGATTGAGGAGAAGATGAGGGACGGGAGTCC TACATCGTCAGTGTCAATGAAGTTTGATGATGAGGGTGAGGAAGGAGATGAGGAAGGGAGATCAGAAACA CAAGTTGTCTCCATCGTGGATGAGCTGGCCTCATCTGCAACTGGGAGCACTCAAGATGACTTGATTGATT CACCAGGAACAAACCGTAAAGACTTAGATGTAAATAGGACTGAAGGTGGAGAGTGTGAAAAGAACCAACA AGATGGGGAAAATCGCAGTGTGGACGATGCAGAGAATGCGTCGGCGCCTATGGACGTAACTGAGACGACA GGCGACAACAACAGATCGTCTGTCTACACCACTTCGGGCGAAGAGATCCAGCTCTCGATGGGGTTGGTGG AGCGACATAAGAGAGAATTTGAGCAGAAGACTGCAGCGGAGGTGCTCCAACAGGACACAGAGACCGATGC TGCAGTGGACGATGCAACGGATTTACCGTGCGGTGCTCAGGGCAGTCCTGGTGTGTGTGAACCGTTAGAG GAAGAGAGAATGGATGTCCAGGAGGAGGAGGGTGGTTGCACCTCAACGGTGTATCCGGATGAAGCGAGCG GCTGGAAAGTTGGAGATGTGAGGAGACACACCATGGAACTTGAAGAGAGGATGGAACTGGCTTCGTCACC AAGTCCCACCAAGAAGTCAGTATTCTGGCAGGATCGTGACGGAGACGAGCAATCAGAGCTGACTAGCGAG GAGCTGAGAAACATCCAAGAGATGGACATTCCTCTCAGATCATCCAGTCCTGATGGTGTGACGATGGATG CGGAAGGGGAGTCAGAAGTTCTGGTGGGTGTGGCAGAACAGGTCAAGCAACTAGAATTGAGAAGATGCCG CTCCATAGCAAAGATGTCCAACGAAAAAGTCAAGACTTTGAGAGCGTTGATTGGAGTGGGGGATGAAAAG CCTGTCAGCGAGTCTAGCTCATCAGCAGAAGCTACGTGCAAGTCAATGGCAGATGAACCTCTGGTTGAAC TGAATCCAGACACGGTTAGACTCTTTACCAGTCAGATAGGTTGCGAGGTCACGCTAGACCAGAAAGCGGC GACGGGAGAGAGAAAAACACGGAAGAGCGAGTCAGACAAGGAAACGCCCAGCTCCTCAGGGTCAAAGATC AAATCGCAGCATGGCCCCTCCCATCCCTTGCGCAAGCTAGCACAAGGGGGTGCAACAGGGCGGGGCACAC GAGGGAAATTCTATAGTACCATGTGATTGTTTACAAAATCATTGTCTTCCATCCGTTGATCAAAAAGTGC TCTGTACAAGTGTGTGTCTTACTGTGTAGCTCTTATGTTTAGATTTCCTTTCAATAGACAAAGCTTTTAC ACGTATGTCAAATATGATGAGATATAAAAGCTGTACAATCAATGTTCGATGGTTGGATTAGATTATTTCT ACTGGAAACGGCAGGGACGTGTCGCAAATATATGTTGAAGTAAATTGGTTTATAATAATGCACAGTGTTG GTAAAAGCCAAAGAGGTCAACATATATTTCTTTCTTCCATTTTCCTCATGTTTGGATACACCTAAGAAGA ACGCAACCCAGCTATTATAGTTAGCTTCGATAGGCAGGATTTCTGAGAAATCCTTTGTTTTGTGGTTTTT TCCAGTATTGATCCCATTTTAGAAATTTATATTTTGTTAAAGCTGATACAATATCTTGTTGAGATAAAAT GAATTGCAGCTGAGCTTTTAATTCACATTGATAAACTTCAGAAACAACAATTTTCCACAAGAGAAAAGGG TATTGTAAGAGCAAATACTTTAATAGATAACCCCAACCTATGTTATCATTTCTTTGCTTTCAAAGCTAGT TAAGGAGACCTGGGCCCCATCTTATAAAGAGTTGCAATTGATTTGAATCGATCTCAATTTGAAATTGATT GCAACTCCGTACTAAAGAGATAGGAGATGCTTTTGACATCAATTGCAAATTATATGTAATCAGTGGCAAA TATTTTATGAGACGGGCCCTGATTTTCGATTTGTCATAAGCCAACCAAAGACATATACACCAAACAATAA GACCTCATCCAACATTGTGTATTACCCTAAAGCACCGTCACTCCTTTTTAATATGAATATATGGCATATC ATTTGTGGAAAGAAAACTTCTTTTTTTGATGTTATCTGTTCATGCATAATTACATATGAATGAGTCAATG AATTTAGTGTGAATTTTCTTTTCCTTCTTCCTCTTCTTCTCCTTCACCTTCTTCTTCTTCTTCTTTTCCT TCTTTTCCTCCTTTTCCTTCTCTTTTTTCTTCTTCTTCTTCTCCTTCTCCTTCTTCTTCATCCTAGAGGC AGAAATATTTCTATATTTCCATTTTCACCCTCTTTTTCTTGTCACAGTGCTTCAGATTTAAAAACCTTAA GAATCTTCTCTCTGTTATAGTTATTGCAAGGACGTCTATGTTCTTTTGAATTTACTGAAATCTTAACAAT TCTATGAAATACTGATCATGCTATTTAAAGTCAGGCTGGTTATTTGAGGATGTTTTTGCTCTCTTTTGTT ATATAGATTATATGAAAATGAAGGATGTGTCACATTTCTTCAAGCATTATGGAGGTTGAGACGCTACAGA ACTATTCAAAGATAAAAGTTGTGTGTGTAGTGACATCTTGAAAGTCGCAGGTTGTACCTATGTGTAGACT GTCTGCTGTGAAGTGGTGCTAGGACATGTGTGTTCAGAAAGAATGTGAAACTATATGTTTAGTCTTAAGT GGTATGAAGGTTTCGACAAGAGATTTAATGTGGTCTAGTCCAAGAAGGGGTTTATGACATATGAATTCAT AAGCTTATGATGTTAAGGTACTGTTGTTGTTTACATGTACATCATTTTGTGATTTGTGACAAGCTTTAGC TCATTGTGTAAGGCTTGACTGTGTGAAAGATGCAATGGCTGGTGTTCAGTCTATTACTTTTGTCTGGTAA ATTGATTTGTTCATGTTTCTTTCATCTTTCAATATTAATCACTGACATGATGTAGGCCGAGAATCATCCA TTTCCACATGCTTAGAATGATGTTGGGATAACATGTCGTAAGAATACCTATCATCATTATGCAGTATGTC TTTGTAATAATGTGCATTTTCATGAATGTTACTGAACAATTAGCAATAATCAAATAATAATTAATGATTT CTAAAAATATGAAAAGATAATATGTATGTATGTATAAAATTGCCTAAATTGACTTAATAATATTTCTTGT GGTTATACCAATTCTGACCTTCCGCTAACACTCCAAAGTTAGGTATTACTAGAAATATTTGACGAAGATG AAGATAATTCCATTGAGAAACTCTGAAAGACCAACATGTTTTGACTAATACCGATAACCATGTTTATTTT TGTCTCAGTCTACTTTTAAAAAAAAATGATTCCAGTCTTTCCATGCAGTATATTAATAAACAATAATTTG TGTGTATTTGATTTATTATAATGATCAATATTATTCTTTCTAATTACATTTCTCTAAATGTAGATTTAGA ATTAATAAGCTTTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds