Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198407.1 PREDICTED: Patiria miniata cyclin-dependent kinase 17-like (LOC119726646), transcript variant X1, mRNA TGAAGTACCAGTTCAATGTATTTCACACTGACAACAGCTCAGCGTTAAGACGACGATCTGGGTGGATGGC TGTCAACATTTTCGACGGGGATTTTTAATGATTTTCCAGCGATTCTGAAATGCCGGTGTAAATTGATTGA CGAATATCTCTGAAGTGACGCTGGAGTGAGATGTGCACGCACACAAGATTCCTAATGAGGTCACAATCGA GCGCAGAGCACTGACTGCTGTCTGCAAAGCAGAAGCCTTTGTTTTTGGCTGTCAAATTGTGGATTGTCAC GGCAGCACCAGACTACATTCACCTGTACAAACTGAACAGCAGCTCACGTGTGGTTGTCGGACTGCTTCAG TCAGCATGAAGCGGTTAAAGAGAAGACTGTCCAGCACGTTTCGTGCCAACTCGGTGATTGAGGACTCACT ATCAGAACTCACAGAGAGTATGAGTATAGAGGAGAATGGAAATACATGTAGCACGCGAGAAGACATGGTG ACGCAGAACGGCACACGGGGCTCCGACGGGGAGAGTGACCAGACATCGGGAGCATCAGATGAAGCCTACA CACCGGTACGACTCAGGCAAAGACCTCACAATAGACTACAACGACGGTTTAGTGAAGACATCTCCAAGCG GTTATCGCTGCCGGCAGACATGCGGTTGTCGGACCAGTTCCTGGAGAAGTACAGCCTCAGTCCGCCCTTC GAGAAGATGAGCAGACGATCGAGACGAACCTCCCTGTCTGAAATAGGTTTTGGCAAGATGGAGACGTACA CCAAGTTAGACAAGCTGGGGGAGGGCACATATGCAACAGTATTCAAGGGGCGGAGTCGGCTAACCGACAA CCTGGTAGCGCTGAAGGAAATCAGGCTAGAACATGAGGAGGGTGCCCCCTGTACTGCAATAAGAGAAGTG TCTCTGTTGAAGGGCCTCAAGCATGCAAACATAGTCACCCTTCACGACATCGTCCACACGGAAAAATCCC TCACACTAGTCTTTGAATATTTGGAAAGAGATCTCAAACAGTACATGGATGACTGTGGCAGCATCATGAG CATGAACAATGTTAAGTTATTTTTATTTCAACTCCTCCGAGGCCTCCAATACTGTCACAAGCGTCAGGTG CTACATCGAGATCTCAAACCACAAAATCTACTCATCAACGACAACGGCGAACTTAAACTAGCAGATTTTG GGTTGGCCCGAGCAAAGTCCGTCCCCAGTAAGACGTTTTCCAATGAGGTGGTCACCCTCTGGTATCGGCC CCCTGATGTATTGCTAGGAAGCACTGAGTATTCAACCTCCATTGATATGTGGGGTGTTGGGTGCATCTAC TACGAGATGGTCGCCGGTAGGCCCCTCTTCCCAGGCTCCACGGTGGAGGACGAGCTCCACCTGATCTGGA AGGTCCTAGGCACGCCCACGGACGAGACGTGGCCGGGCATCAGCTCCAACGAGGAGTTCCTCTCTTACAA CTTCCACAGGTACCGGCGGGAACCGCTGGTCAACCACGCCCCGCGGCTGGACGCTGACGGCCAGAGCTTG TTAAGTAAACTCTTACAGTACCAAGGCAAGAACAGAATATCAGCCCACGATGCAATGCGTCATCCTTTCT TCAACTGCTTCGGACCTCTTATCGCAGACCTCGGTGATGAGCATTCAATATTTGAACTCACAGAATGTAA ATTGGACAAAGACCCGGGTATCCGAAGCTCGGCAGTATCAGGACAAGATAATTGCAAGGATCCAACCACA AAGCATGCCTATCCAAACTGTGGCAGGTCCCATTCGTGGCAGACGGCAAAGCATGGTGTACTGAGCACGT GACGATGACCCCTGACCACGATGACATCATCATCATTGATTGGACATGCAAGGACGCTCGTTTCCTACAA TGCCCCGCCCCTTTTTCTTAACACCTGCTGTCTGTGTATAAGCAGGTGTCGGCACTTTGAGCCCCGTTTT TATTACCACCCTCCCTGTAGAGGTAGTACGGTAGACAGTTTTTGTAAGTCTCACCACGCACCTGGCTTAA GAAGGTGATAGAGGGCGCCCTTCAAATACAATACGGCAGCTGTAGGGGGCAGTCTTCAGTAGAACTGATT GGCCAGTTAAAAGCGCAACTTGGTTGACTTCCATAAGAATGCTGAACTCCGAGTGGCGTGTTAAGAAATT CAAGCAGTTGTCTTGTTTCGTGGGATGGTCGACATGCAAACAATTCAGTTAAATATGACCGTGGTCTTTT AAGTTAATTTGGAGAATTCTGCTCAAGCACCTCTGATCATACACCCAGTAACTTGGGTGCTAGAAATCCT TTTTCCTTTTTGAATTTTGGTCTGGATTGGTCATCATCGCAGTGCTCACTGCTTGAAACAAGATCGTGAA AAACAACTATGCATATCGGGGTAAATCAATGACTCTTTCGTGAAAGGAGACGCACTATGACCGCATTAGG GCCTGTAGCCACAATGCATCTTCAACCATTTCACAAAACAGTAGTTTTTTGCTATCTCTGCATGCGGCGG ATTCATTTTGTTTCAAGCAGTGTGCCTTGTGATGGTGACAACTTGTCAAATTTCATCGATTTGCAACACA CAGAATGATTGTGAGTACCATTGAAGCCCCAGTAGTTGGTCAATAGGCAACTTAAGAGGTATTCTTCACA TCTTTGTTACCGTTTTAACAGGATATGAGGCACAGTATGAAATATATATTCACCTGGGGCACTAGTATGA CAAAACCAAAATTTCAAAAAAAGGTTCTTGTTCTCCAGTTACTGGGTCTACCCTTTTCAAGGCAGAAGGC CAGTTATTATTGTTGCCTATAAAGTGAGCTTTTCAATTCGAGATCTACCAAGCAACAGAATATTTGTTGG ACAGGTGTGGTTCTCATTATATGGCACTTTTAAGTCAAAGTATTCTCTGCGTTCCTGCCCACTAGAGGGC GCCACACGCACCATGCAACAAGGTTAAAGATGACATTTCACCAGTTACCATTTACAGACATTTAACGATG GATATCAGGCATATGTAGGATAAAAATTACTTGTTATTTCTGCTAATTACATGCTCATCGCTGGAGATAC ATAATCCCGCAGCCTGGAGATACATAATCCCGCAGCGATGGCATTGCTGTACAAGAAAACATTTGATCAG AAAGATGTCGCGATAAATGTTTATCTTCACCAACAAATAAGGTACAGATGTACCGACAACTACATAGACC CACTCACAAATCCTTACACATGAATCCTGCGAGGCTTAGAACTCAGAGGAAGAAGTCAACCTGTTCCTTA CTGAGCTCGATGATTTCTCCTTTTCTGAACACTTACGTAAGGCCCACAGCTAATTGTTCATAAAAATAGC GGTGCAACTGTACACCTTACTTAGGTATTAAGCAGTGCCTGACAAGCACAGACAACTGTCTCTGATGTTT GTAGAGAAATTGTGAGGCGACTATTTTTTTCATATGCTTTTGATGTCAAACTACAGATATCTTCTCCTCA GTAGTTTATTATTTTATTAGTTTATACATTTGTTTTACATTCCTCTGTTTTCTTTTGTTCTTAAATTGCC CAGATTTTTAGTGATGTGTTACATGTGGTCCCTCCATAAATGAATGTTTTTAAGTAGACAATTTTTTGTT AGTGTAAACTGATGATGAAACTGTTATTTTATAATGCTCAGTAATATTCAGTTGATTTGAACTCGGTGTG TATTTTGGTCGTGAGTGAAGAGAAACTGCTCTCTCGTGTTGTTTCCTGATACTGTGACATCCATGGAGTA AAGGAGATTTTTTTAGGAATTTAGTAGGCAAGTGCAACGATTGTGGCTGTATAGGGACAGTTATACATTT GAACCTTGTCTTTTTTTGGTTGTTTTGTTTGTAACTTAATACCCCTGAAACCGAAACCTCACTTGCACAG CCCACCCCCTAAATACCCCACCCCAGTTGAATGTCAGTGTTTTACCCTTTCCAACAAGTTTTGTTGTATA ATTTCTGAATTATTTCATCCTCTAAAGCTGATGTAAAGGTGATGCTGACAATCGCACTGTTCTGTGCCAC AAGTTCACTGAATTCTTTGAAAAAACAACACTATTTCATATATGCAATATAATCAGTAGACGAATTCCAA CGATTTAGTGAATCATAAACACTGCCCACTATTTTCAGTGATCCTGACTCCCCCCCCCCCCTTTGGCTCA TTGTAGCCTCGCCCACAAAGTAGTTGATATGAATAAACACACTGAAAACTTTCTACCTGCGTATATCACA AAATAATCAATTTCCATCAATACTGTAATTAGTATGTATTAATTGACTCCGTCGCTGTTTCAATTTGAAA GAGTTTTTAAAGTTTGAGACTAGCAAGCCCTATATATATATTTTTTTGAACCAATGGAAAGATTACTGTT AAATCCCCTTTAACTATTCTTGAAATTTGCCTGGGTTTGCCCTAGAACTATATGATATCTCCGCAATTTA AGATATAGTTAATTACTATAGGTAGAATCTCTAGTTTAGTTAGATTTATTATTGTGCATTGTAAGCCAAC ACTTACAATAAATTATTTAATCCAAATCACTACAACTCATTTTCAACAAGCACATATATTCTGTAGCTAC TATTTGCAGGGATTCTTTTGTCCAAAGAAAATTGTCAAAATTAACCAAATCACACATAACTCTAGGTTTT CTTTTATCCCCCCCCCCCCCACAGAAAAAAACAGAAACATGTATCTTTTAGCTTTTGAATTAGTTTGAAA ATTAGGTATAACTTTTCTCCAAAAGTTAGGTTCCTTTTGTATCAGTATTTTGTAAAGTTAGTTCCATTGT GTCATACCTCAAACTTATCTGAGCTCCCTCTCCCCCTCATGAAAACAAAATTTGAAATTCAGTCGCCTTG TTTGTCTTTTTTTTTTTTTTTTTTTTTTTAATATTAAGCGACATATGACATTTCCCAAATTTTTTTTGCG TAATTGCCCAACATTTTTGTAAAAGTCCAGTTGAAAATTCACAGTCTTTTCCCCTACAATGGCAAAGATT GCCTTTTGTCTACTTAACAGAAGTGCTTTTTTATCAAATACCCCATTTTTTTCCATAAATTCCCATAAAA TGTTCTTATATTTTCCATAAATATCCCCTCCCCCAATTTTTCTTTTAGGTCCTTAATGGAAAGTCAGTGA ATAAAATACTTTTAGTTGACTTGACTTCTATACATGTATCTAAGCTGACTTTGACAATTTAGGGACTTAC TCGACAACAAATATACAGGAACCTTGCATCACAGTCACCATCATCATGTTATCATACCTACCATACAGAT AAGCATATTTATGTGTACCACTGAAGAAAACCCCCCAGATTAAGAGCATGCATCTACTTTTACTGTATAC TAACCGTTGATGCCTTCCAACCACATAAATGTTATTATAATGTACATAAACTTAATTATTGTAACGATAC ATATTTAAATGTAAAGTAAATAAAAACAAAAGAGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds