Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041609748.1 PREDICTED: Lytechinus variegatus sodium-dependent phosphate transport protein 2B-like (LOC121416240), mRNA GCGGAGAAAGAGAGGTTTTTCACTCTTCCTGGTAAACTTTGGTGCAAGAGATGGGAGTCACGTACTGCTC TGGAAGGGCTAAACATTCCTGAGTTGCAATTGCATCTTTTTCTGATTTTATTTCGAATCTGTTTATTTTG TTTTGTTTCATTTAGGGGAATTAGACGTGAACTTGATAATGGCGTCAAGTAAAGCAGCGGAGAGTGGTCT CGATATGGTAGATACAGATGCAGTAGAGAAAGGATTGGTCCCCGACAGTGAGGATCCATGGGATGTTGCT TTGGATGAGATCAACCCAGGAACTAAGTGGAAAGACCGAACAACCACAGGCAAGGTCATCTTCGTGTTCT TAACCTTGGTCCGCATCACCCTCCTCCTTGGATGTCTCTATCTCTTCATCTGTGCCCTTGACTTCCTGGC TACGGCCTTCAGATTACTTGGTGGTGAAGCTGCCGGTGAGGTTCTTCAGAACAGTGAGCTTCTATCCAAT CCAATATGTGGGTTAATGATTGGTGTCCTAGTTACGGTGCTCGTACAAAGCTCCAGTACTTCAACTTCAA TCGTTGTATCAATGACGTCAGCTAGAATCATTTCTGTGAAGCTTGCTATCCCGATTATCATGGGCGCTAA CATCGGAACTTCGGTCACAAACACTATCGTGTCGCTAGGTCAGGCAAAGGAGAAGAACGAGTTCCGCCGT GCGTTCGGTGGTGCTACGGTGCACGACATGTTTAATTGGCTGGCCGTGCTGATTCTTCTACCATTAGAGG TGATCGCACAGCCTCTCTTCCGTCTCACCGAAAAAATAGTTGTCGGTGCTGGGATCGAAAGAAACAATGT CAAGATTGAAATTCTCAAGGTCATCACTAAGCCATTCACAAGCTGGGTCATTAGGATTGACAAAGGAGCC ATTGAAGACACCGCCCTCAACCCAAACCTTACTAATGTCCGTCTTCTTAAGACATGCATGGTTGAGATGA CCAGTACATTAGCTCCGGGTGAGATGACCACTGCAATGATGGAAACAACCACTCCAAAACCATGTTCATG GCATTGGTTTGCATACTCTGGTTTGAGCGATACTGTCGCCGGTGTTATCATGTTAGTATTCGCATTGGCT CTCCTCTGCATCTGTTTAGTCTGTATCGTCAAACTCCTAAACTCACTTCTCAGAGGAAGCATAGCCCTCG TCATCAAGAAGTTTGTCAACGCTGACTTCCCTGGTTACACTGCATTCCTGACAGGCTACCTCGCCATCCT CATCGGAGCCGTCTGCACATTCATTGTCCAGAGTAGTTCTATCTTCACGTCGGCGATGACACCACTCGTA GGCATTGGGGTCATCACGCTCGAGCGCATGTACCCTCTCACTCTGGGATCGAACATCGGAACGACCGCCA CCGGCATCATCGCAGCCCTACCGAACGAAGGCAAGGACCTCGCCAATGCAATGCAGGTTGCCCTCTCGCA CTTTTTCTTCAATATCTTTGGCATCCTAATCTGGTATCCTATTCCTTTTATGCGCAAACTCCCAATCGGT ATGGCCCGGGTTATGGGGAACACCACTGCCAAATACCGCTGGTTCGCCATCTTTTATCTCATCACCATGT TCTTTGTACTTCCCGCTCTTGCATTCGCGCTTTCTATCGCTGGTAACATCTATCTTTTCGTTATCGGTGG CATCGTCCTCTTCGTCTTCCTTGTTGTCCTGTTCCTTAATATCATCCAGAAGAAACGTCCTTCAATTCTA CCAAGACCACTTCGAACCTGGGAGTTCCTACCCTGGTGGATGCATTCCCTGAAACCTCTTGATTACGTGT TTGGATGCAGGTGGTGTCGGCAACAACTCCAATCCGAAAGCGACACTAAATCAATTGTCTATGCTTCTAA TGGTAAAGCAAACGGAGTCAATGGTCTTAGTAACGCAGCTTTCGATACTCCTTTGTAGACTGACTGTTTC CATGGTTACTGAACAAGTATAGTTTTCAACTGTATTTATTTAAACAAAAATTAAAGAAAGACAGCCTGTT CCCATGATCAATGTGTGTCCAGTTTGTCAGAAGAACTCTTTCTACTAATAAAAAGATTCGGTCTGTGATG TGATGTTCAGGGCGATTGACAGTTTAGAAAACTATTCAATACATGTACATCGCATAACATCATGTGATGC AATGCATACATGTGCTTTAAGGCGCGTGAAGATGGTATATCATGTTGTATGCTTTTGAGGATGCAGTATT TATTAACATATCGTCAACTCCAGATTTTTTCCCTCCAATAAGATACAGTTTATCATGTTCTATGGTGTAG ATAGACATTTAACACTGATTATTCATACCAGATGACTCTCTGTTTCATTTCTATATACATGATATATGTG ATGAAGCGACTATGCATTTTAAATATTATCTCCCCCCCAAAAAATTGTGATTGTTGAATAAATACAAGAT CAATGAAAATCTAGTTTAATTCCTATAATCATTATGCTACCTTTTGATTTTTGTGAGAAAATGGTAGACT TTGTACGAAATAACTTTTCCCTGCCTTGACATGAAAATATGAAAATCAAGTGATAAATTGTGATCGAATA AGATCAAAAAACGTAAAGGTAAGAATGAAAATTGGTTTTATATTATTATGGATGTGATCATTATAACCGG TATTTTGTACATGAATGAGGCTTATACTATTTATGATTTAGTTTTGTCAGGTAGCTTCTCTCTTTCAAAT TTACACAGTACTACTATAAAACAATGCAAATTTATCGTGGTTATTAAGAGCAATATGAATGTTGTACATG TACATATTTATGGGCAATATGCTGAATGGTATTTTAATAACACTGTCATAACCCTTTTCTCGTAGTTATT CATTATCTTCAATGCATGCTGAATCTATATCGTTAAAAAACATTGAAAGAAAACAAAATTATCCAAGAAA CTGAATTATACATCTCAGCGCAGATTTGATTCTTTTTTTTAATGTATGGGCTTAGAATGAAGATGTACAG TGCGTCCCAGAAAAAAAGGAAACCGGGATTCCCACAAGTTTCCTTCAAAGGCAAATGATTTATGATATTT CATTTACATCATCATACAATTGAATTATTCCTCTACATTGGGATACATAATATGTGACAAACACTTCACG CATTAATGAGCAAGACGAGTTTGAAATTTTAATGTCAAAATCAGTTTGCGCACAAAAAAAAAATATTTGT GATGCGACATCCGTGCTTACTTGACGATTGACTCATTAGCATATTCTTTTGTTCTCGTTGATCCCTGAAA TGAGTATGGATTCGGATGAACACGTTAGTTTCTGCGCAAATCGTTTCTGAGAGGCCTCAATATTGTTTGT AACCTGCCATGCATGAATGATTTGCTAAGATGTTGCTCTCAAATTAAAGATGAGATTCCACTCTTAACAT GAGTATCAAATTCATAGTACACCATGTTTAATTGTGAATTTTTTCTATAAAAACGTTTTTTTGTGTGTTT GTGGGACGCACTGTATAATGGGGTCTACACAAATCACAAAGTGCTGCAATTCATCTGGTATATAAAGCGT GTTAAGCATTATGTTTCCAGTTGTCAAATTTTAGTAAAATATCAATATATCCAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds