Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030973486.1 PREDICTED: Strongylocentrotus purpuratus ETS translocation variant 1 (LOC580556), transcript variant X1, mRNA CCCGTACCCATGGACGTATCGCGCGATAGTACTGTGCAACCAAATTCGTGCGACCGATATTATCCGTGCA CGAAAATTTTAAACAGCGAAAAGCTGGCGACAGGTGAAAAGCTCCTCAGCAGTGCATGGAGATGTCCGAT TTATGTCACAACGTTTGAGTGACATTGTTGGAAGATTTCCATCTTGTATTGGAGACTTATTCACGTGTTA AACCGGCTAGTGTTCGACATGGACTAACATTGTGGATAATTGTTTTGGAAGAGGGAAGAAAGACATTTTT GGTGTATTTACGTGGGCTGTCAGCATCTTCGGTCAGCTGTTTTGGGGAAACCGCACATGTAAACGTACAG CGCACACGACGTGAGAAGCTCGGATCTCCGAGCGTTTTCCAACGCCAAAATTGATGTTAATTCCTTCAGA ATCTGGAAATACGTCTAAGTCCGTCCAAAATGTATAGGCCATCTAGTTTTGACGACCAGTCAGATGGATT TTATGACCAGCAGGTGCCCTTTCTAGATTCCCAGACTGTTCCTGATGTTGATGAAGTCCCTGATTGTGAA ACATGCCCAGAAGGTGCATCATGTGGAAAATCAAAGGGAGATTTGGATCAGGATTCAAAAGAATTATTCC ATGATCTGGATCAATTACAGGAAGAATGGTTAGCTGATGATTTCGGCTATGGTCCAGAGTCCGAACCAGA ACAGTATGTGCCTGATTTCCAGTCCGAGAATCTACCCTTGAGCATCAAGATTAAGCCCGAACCCAGGAGT CCTGGATACCACAAACCATGCGCGCACATGAAATCACCAGCGGCCAGCACCAGCCACCGCCATTTTGATT TTGACAAATTTGAGCAGAAGTTTGCTTACGGGGAACAGGTGCTGGTGGACAACCCCTTCAGTAAACTGGA TGGACTCTCTTTGGTCATCCCTGCACCATCTCCTAGCAGTACAGATGATCATCCCAGTCCACCAGGGAGC GCCTGCTCAGATGCAGTGGCACCACAGAGCTCTCCTGTTACTAAGGGCAACGCATCATCTACAAAGAGCA CCACTGGCAATGCCAAGGGTTCCACCAAGAGTAACTCATCAGGGATGGTGGATATGGCCCAAAGAGCCAT GGCATCCCCCTCTATCGACCTCAACATGAACCGCATCATCAAGCAGGAGCATCCGGGGCCATCCATGTGC AGTAGTAGCTGCAACAAGTCCAACAATGACACCAACAACAATGGCAGCAGCATCTCATCGCCAACGACGC CGCAGGGGCCGTCCATGTGTCAGATGGTGACATTCAAGGAGCCGCTGTTACCGGGCGGAAGCGGGTTTGG GCCAAGTAGCAATCACTTCAGGGCACATGGACCAGGTCCTGGTCCTGGCTTCTTCCTGGATAAGAGTAGG TTCCAGAGGCAGACCTCCGAGCCCTGTTTTGGCAACCTGGCCCATCCGATGGGTGCTGCAGGGAACTCAG CAGCTGAATCTGGTGGTGGTGGTGGTGGTGGAGGACCACATCCATTCCAGCGTCAGAACTCTGAGCCGGT GTTCCTCCCGTTCAAGAACCGAGTGGGATTCAATCAAACACGGTTCAGGGAGACTATCGTGAAGCAGGAG CCTGTGGACTATGGCTATGAAGCCGAGGTACCCCGATCCTTTGGGAATGGCTTCCCCCGTCAGGAGATGT TCATGCAACGCCACTGCAAGGAGGAAGGCGGGCAAGTGGAATGCGGCAGGGCGTTCTATGATGATGCAAG CGTACCGGAAAAGGCTCAAGAACAACACAATGAGCCGAGGCATGAGGTGGTGCGAGAAGGGCCTCTCTAC CACAGACGTGGCTCCCTTCAACTCTGGCAGTTCCTTGTAACTCTCCTTGAAGACCAGTCCAACGGGGCCT TCATAGCCTGGACTGGGCGGGGCCTGGAGTTCAAACTCATAGACCCAGAAGAGGTTGCAAGACGATGGGG CATTCAGAAGAACCGACCTGCCATGAATTACGATAAGCTGTCCCGATCCCTGCGTTACTATTACGAGAAG GGCATCATGCAGAAGGTTGCGGGGGAGCGCTATGTCTACAAGTTTGTTTGCGACCCAGAAGCTCTATTCA TCATGGCGTTTCCAGACGGTCTCCACACCCAGCTTAGGGTCTCCCTGCCCCCTCCTCATGACCAAAGGCA GCCCCCTCCTCCCAGGCCTTCTCAGATGAGACCGATCCATCCCAAAGAGGAACCGGGCGTCCTGACCCAC CCCCCTCCTCAGCCTCCTAGCAGAACGCCGAGCAGCGAAAACTGTGACCTCTTTGTCCCTGACCTCAGCC ATGCTAACCCCTGCATGACCAAGTCATTCTCTGAAGGCTGCGTCTACTGAACACATCGTTCCCCCTCCTC AAAGTGGCGCTCCTACCTCCCGCTCAATTGAGCCTCGCAGGATGGATTTTGAAACCTTTTTTGTACACAC AGAGATTATAAAAAATTCCTTGTACTATAGTAGATTATGTTGTGCAAAAGTTTGAACTTTTGAATGGCTT GCGTTGTTCATTCACTTCAATTGAGATGGTATAAAGTAAGTGATTTTCAAAATAAATTAACGTTTTGCAT CAGATTAAGAGGAAATGATGTAAATACTGTGGAAGTGCTTTAACATCCATGTGTTTTGACAGCGCTTGAT GGCACACAATTCATGATATGGTTATTAAAGGCTTGAAGATATACCAACTCTTATCACCCATGGGGGACAC ACATGGAAGATGTACTCAAAACATGTTTCCTTCTAAAAATCAAAGATTTAAGTGAATAAAATAGAAGACT AGTTTCACCATCATACTCATGCATGTCTGTTGCTCAATAAGCATTGCTGTCAAAATGATACAAGGCTAAC AAATATTCACTTTTTGCGGTTTTAAGAAATTACCGAACAATTTTGGAATATATGAACTCATTTTTAACAT GACCAGAGGTTACCAAAGTAAAGTTGCTCAAAAATTGTGGCACAATTTGTTATTACGCTCCAGCAAAGTA CACCAGGTTGGTTTTGAGGGAAAAAACCTTCTCAGCTCTTGCTTTTCACACAAAATATACTTTTGGTCTT TAAACCCTAAAATAATGAAGTTTTTAAATCTTGCAGCTGCTTTTGAAAGTCATATTATGTCGATCGAATT CATGCTAGTTGGCGACCTCTAGCAAAAGATGAAAAATATGTTTTTTAAAAAGTGATGATTGTTTGATTTT TTTGTCTGATGTGATTTGGTATAACCTTGATGTTTGGCTTTTGGTATCACAGTATTGATAGTTGCTGGAC TTTACACCATGCAAGCGTCTTGCATCATCTGAATATATATCTTGTGCATGATTTGATGAAACTTATTTGT AAGGATTAAGAGAAATATATGATAGCCTTATCTTTTACTGTCATTAGAAAGGTTTTTCACTCATATCAGT AGTACTATTTGATCTCTCAGTACAGATAACTTTCAGTTCTACCTAGGCGAAAAATGACATCAGTACCGTA CATGTTTAGAGGCTTACTCTGCGGATTAGGGAAAGTCAATTATTTTTTACCAGTACAACATAGACCTTAT CGAAGATTGGTAATTTTGTATTTTTTTAAGAGAACAAAGTATATTTCATACAGATATTTGTCAAGTTTAT CAGAAATAATCGTATGTGGGGGAAGTGTCAAAGTTTTTTGCATGACTTGTGAATATTCAACTGTGTGTCA GATTTATTGTGATATGTGATAAATGTGTTTCGATGTTTATATAACATAAATATCAGGTATTGTCATTGGC ATGTTAATTGTAGTATCAGTATGTTGTGTTAATATATGAATGCAATTTATTCACATTTTCAGTCATTACT CTGTAAAATACCAGCAGCTTGACAAGTACTCATTTTAATTTCATTTTTTGCCTTCTGTTTCTTAACTGTT CACAGTTTGAACATAGGAAGAGATTTAAATCACTTAAAGCTTTGAAATAGTGTTTGCATGCTACAGATGC AGATTGATGCAGGAAGAAATGTATCATGTGATAAAAGTATTGATCTAAGTTCAAGATCTTGTTTTTAAGC TTTAAATTCTCTATATAAAACTTGACTTGAATGGTGGAAAGTGTTACATGTATGGATGTGCTTGAAACAC AAAATCAGAGTTTACATTTCAAAAGAATTTTCACAGTTACCATAATTATACATGTTTGGAAATTACGATT TGTATTTTTACATTCATTTTTTAAAAATGTGTACGAGTATGTCCTTACAAGCTGGTTTTAAGCATCATTA TTTTTACGGAACAAGAGAACTGTTACTCATTTTTCACCACTGCCAAGCACGTGTATATACTTCATATTAC ATTTTGTTATACCTTTTTTAACAATATTAAGTATCTTTTTCACATTTATTCTTGTACTTGTGAAACCAGG AAAGGATTAATGTTAATTTCAGGATGGGTTCAAGATAAGTGATTGTTCATAAATACACTTGAAAAACATA TGGTTGTGATTATATCTATCACTAACAACCCATTCTATGCACATTTAAGGGGTTTACCCCATTATCAGAA CAAGCCTAAAGGCATGATGCATGCTTAACATCTTTTCTCACGGCAACCGAGCAAAATGGGAATGAAAACA TGGGGTTCTCATGTGAGAAAAGTTCAGAAAAATGTGCTTAAATTCAGTTCAATTAGCAGACTAGTATGAC GGTGGATTGAAGTTTGAGATGCTCTTGATTCCTACGTTACTGATTGATAACAAATTTAAACTTTTGGTTT GAGACCTGGGCTCATATTCATAAAAACCATACAAGGGCTAGGTGTTAACTAACTATAGCATATGTAATTG GTTGACAATTTGCTTAGTAAGGTTTTATTAATCTGGGCCCTGGTCACTGTATTCTATATTGTTAAATGGC TTTATAGGAATGGAATTCTGTATATTTCAACTTGCGATGAATGCAAGCATTGGGTATGAGTTTACTTGTA ATACACCTGAGATAAGTCAGGCTGGGATGTGTGGAGATTGTTTTACCAAACTTGTTTACCACTGAATTTG ATTACATCAGGTTTTTGCGTTTGTCCTCCAAATGTTTCAAAGTGCACTCTTGTATTTGAGAGTAACATTT ATAGAAATAGAATTTTAAAAAGAGCAGTCTTTATGTTTTCAAGCAGATGGTGGTATAAAGCAGTGTACAT GTATAACATACCAGTTGTGCATATATTTTAGAAGTATTATCTTCAGGAAAGTTGAAAGATGTAGACATAC ACGAGTGGGAAGGATCTTCTCAATTGCTTCATTTTTGTACATATTTTTTCATGAAAAGTGTCAACTGATC AGTGCCTGAAAAAGAAAACTTGTGATTTTTTTCTTCTAATTATCTATGAGAATACAAAATCTAGATGACA GAGATAACAATTAACAAGTGGAGAGTTATATCTACAAGCAGAAAGTACTAGAAAGACAGAAAATATCTAC TTTTATATCTTATCAGTGAGCAGAATTATAATGATGAAAAATCATCCATGTTTTTTGTAGGAACATGAAA GGAAAAGTTGGACTTATTTTTACATACTGTGTTTCAGGACTTTGTACAGGTGTAGTGTACGGAAAGCTGA AGATATTGCTTTATGTTTCTCTCTCTCTCTTATTTTTTACTGCATATAAAATGATTGATGTACATTGTAT GTCTTGTTGGGTCACTAAACTGATAAAAGTAGTGAATTGTATCAGAGTATTCATATAGTTTGTATGCATA TTTTAATTATTGTACAGAATTGTCACTTTCACATCACTAAGGAGAATTTAAAGTGTTGCACTTATTAATC ATTGTTCTGAATGAGTGAAATTAAGTTTTTTTTTAAAGTAAATGTTAAAATGTCATCTCACCTTGGTTTT AAGGAGAAATTTTCTGCATTGGGGAAAATGGAAAGGAACCAAGTCAGCATAGAAGTTTTGTTGTTGATCT TTAGGTAATTATTTTTAAAATGTAAAGGATAAGTTTTAAAGGGACTTTTTTTAAAGAAGTTAAATTTAAG ATCTTGCCCTTAAATCAGTGAATTTTACCTGAAGTAAAGAATTTGATTCATAATACTTTTACTATCTGTT TTGATAAAATGATATATACAGTACATGAGCATAGTTTAATTTAAATACAAGCTCTTCTTGATAGTTTTAA TTCCTTAACCCGGCTATAAACTTTCAAGGACAACGTTGTGAATTAAAAATATATGATATATATTTAATTT TTGAACTAAAGTGTAATGTTTGTCCATTTTTTAAGGAGTTTGAGTACGAAAGTAAATTCTAATGATGACC AAAAAATTTGTTTGGCGACTTTGTTTAGATTTATGTGATTCATATCTATTCAAGCTAACAAATTTTCAGG AATTTGTTGTACAAAATCAGAACAGCTGATATCCTTTCCCCCTCATGTTTTTCTCATATAATCGCATTGT ACATTTTCATACCTTCATTATGTTTTGTTCTTGAACAAGAGTTGTACTTACATAATTCAAAGATGAATTT TAATTTGTTTGATTACTTGATTTGGAGAATTTGTAAATAGCAACAACAGTGGTACATTGGTTGTACTATG TAGAAAGAAATTTTAAGATCTTTTAAAGATGTTACACATTTCATTTGCTATAAATATGTCTTGAGTTAAC TTGACTAAGGTCTTCTGGGATGCTAGTGGGTCCAATTATTACTCAACATCTAGAAGGTTAGTCCAGCAAA CTAATATCTTAAAGAAAATAATATTTCAAAGCTCTTTTATTCCTCTTTTATTGTATACTTTTATTTACAA ACTATGTAATATTTGCACATGTGGATTCAAACATAAAAAAGCAGTGATGGGGGAGGGGGTAATTATTATA ATTGTGTTGGTCACTTCTGCTTAATGAAATGTATTAATTCTTGGGTGATATGTTTCCCCTTTATTCTAGA TTCTCTCCTATTGCAATGTCGGTTGAAGCTCATGTCAATTCAAAAAAGTCAAGGTGACCACCCCCAAGAA AACATTATAAAAATATCACTTTAGATTGCTGCAGGTTGCCTGGTATTTCTGTATCCATTTTGTCTCTTCT TCTCTCAAGTAAACCAAAGTAACAATAGTTGCTTAAGTGAGTGGTAGTCATTTGATTCAAGTTAAGCTGC AAGATGATTTTAAGATCCCAAAAAGTGTTTTCTTACGAAAGAAGTGCTGCAATTTTATTATGAATATGAT ACTCAGCAGTTTATGTCATGTATTGGCTAGAAGTATTGAATAACAGGAATTTGTACCAAATATATTGGTT ACTGATTCTTATTTTCATTTGGGTTTTCCTTGGTATGATAGTATGAAGACAACTCAATGCAGAAATCAAT TTGCAAATCTTCAATTGAATGTTCTGCTTTGGTGTTCCCAGTCATTTCATTTTGCTGTCACTTTCAGTTT ATCTCTTCTCTCTCCAGAGGCTTAGATATACTACCAAATGATTTCATTCACCTATTCTTAATCTGTTGGG AACAGAAAAAAAGAAATCTACATTAAATTGAAGAATATATCTGTATAACTTTAAGCTTTTAATGTTCACT GCTTAAGAAGAATATAGTAGTGGCATAGATAAGCATACTTTCAGAAATTTACCTTTGATCCAAAGAATTT TACTATACTTCAGACAACTTAACTATACCTTGCAGTTTCAAATATCTTAGAAATTGACATTTGCTAGGAA GTTTGCATTTGATGCGGCAATCAAGAAACATTTAAACATTTGAATGCATTTCCTTCTCAGAAGAGGTAGC CTTTAGGACCGTTGTTAGTCTGTACATGAAACTTAAAAAGAGGATAACATTTAAAAATTATCCGGAACAT ATCTTAGGGACTTTCGTATGACTTTGTTATGAAAAGCTTGATTCTAATATCATAATTTTACCTCAAGAAT AATAGTTTTTTTATAAAGATGTATAACGGTTTTGAGAGAAGTTTTCCACTTGATAATGCCATTGATTTCT TGGATAACATAAGCATGGCAAATTTCTATGTTTTGGGTAGTCGTTGCTTTTCTCATTAAATCACAGTGGT TTTGTACATAGCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds