Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201849.1 PREDICTED: Patiria miniata myelin transcription factor 1-like (LOC119729257), transcript variant X2, mRNA CCTGCTCTACCAATTGACTTTTTATCAGATGACCTCGCATAGATCTAATCCCTAAGTCTCCACATGTGTC TGTGACTACATGCATATTCCACAATAAACTTTACAATGCTAAGAATGTTAGACAGGCATGTAATGCTTTT TGCACTGTGTGCGGCGCAACTTGTCTCATCTGGGTACCAGGAAGTTTGACAGATATCCAGACTGGATTAG CTCGCATAATATTTCTACTCGCCACACATCATTGTTATTATGAATAGCAACTTTGTTTCTGTATTTCTTT CTGCATCAGGAAATGGAGTATGAAAAACAAAAGTGCCCTGCCCATACAAAAGTGAACTTAAAAAACAAAT CTATCAGACACTTTGTACAGGGTTTCTCGTATGCATGTGTAAATTGTACAGTGTGGTTGACGTGGACGTT GATGTAGCCGTGGTGCAGTTGAGATATTGCTTTGTCATAAAAGGTTGCAAAACAAAACTTTTTAAGTTCC ATCATGAATGGAGAGGACAACACAAGGTCACGGGGTCGACTTATCGAGGGGTCAGAGGTCAGCCAATCCC CACGTCGCAGTCTGCGGTCAAAGTCTGGAAGCCCCGTAATTCTTCGCAAGGCAGCTGACGAACATTCGGA GAATCGTTCACCGAGAAAACACATTGCTCATTTATCCAGCGAACATTCAGATGTTATTGTGAACGGCTCG TCGTTGGACGCCCCAGTCAAGGGACGCAGCAGGCTTGCTGAGCTCCGAGAGGCCGTGACCAGATCCCCCA GCAGAGACCAGACTAGCCGGGACCAAAGCATCATGGTCAGGGAGGCGACAGAAAACGAAGACAGGCCAAG AAGGACGCGGGCGACTGGACCAGCAGATCCAGTACCAGAGCATACAGGGTGTCCCACACCAGGCTGTGAC GGATCAGGACACACCAATGGCAAATTCTCTAAACACAGAACACTTGTTAGTTGTCCTGTAGCATCCAAGA AGCGAAAACTTGGCTCCAAGCCCACTTCACCTGAGCCCCAGCGCAAGGCAAAGCGGTCGCGACGCCGTGG TGGTGGGGGCAACAACACCACCAGCAACCAAGAGGAAGTTGACGATGAAGTCATCATCAACAACAGACCA GCCACGAGGGGTGCGACAGCAGCAACAGACCCAGAGGACGAGAACTCGGTGTCATCATTAGATGATGACC CGCAGTCCAAATGTAGCCGGCGGGCCATCGTCAACCTCCAGAAGCTCCTGGACAATGTGACGGCCGAGAT CGATCAGGAGAAGAAGGGGGAAGAAGGGGTGGAGCCGACCAAGAAACCAGCAGAGGCAGAGGTGGAGGCA GAGGATGAGGAAGAAACCCTGCCTGATGAAGAGGAAGAGATGAAGGATGCGGTCAGCAAGGAGACGGAGA CAGAAAAAGATGAGGAGTTGGAAGAAGATGCTGTCGAGGATGCCGAGGAAAAAGAGGAAGTGGAGGAGGA TGCAGATGCTGAAGACGATGAAGAGGAAGAAGATGAGGAAGAAGAAGCGATGGAAGACGATGAAGTCCAA TTGAACCTCTACAACTTTAAGAACATCAGCACCTCTGTCGGGACAGAGGACCAGGACGATGAAGAAGTCT GCACACCTCCTAAGCTTCACAAGGAACTGGCCTTTCTCAACCAGGAGGTATCTGTTCTGCAGGGCACTGC TGAATTGTCAAAGAGCTCCTCTGCTCCTGACGGTCTTGAAGCAAAAGACGGCCACTTGGACACCATGGAT AAGGATGCTGGGGATGCCACAGGCACCGAGATGCCCACAGAGAACAGCGAAGATGATGCAGACGACGACG AAGATCAAATCCTAGAGCTGGTAGGGGAGGAATCAGGAGATGACGATGCCTTCTCCTCAGTCCCTCCCAA GCCCAAGGAGGCAGGCGACGAAGACGATGATGACTACAACATTGCCATGCCGCAGCTGCCAAAGCATCTC CGTCTCATGAGTGAGCAGCTCTCCCAGGAGCTTGAGGAAGAAACCAAGAAGCACCAGTCTGATGAGAGCA TCCCTCATCAGGAGGAAATCCCAGAAGAAGAACCTCCTCAGCCAGTTGACCAACTTATCCCGGCCATCAC CACAGACCAAAACGCTGAAGCTGTTCAGGCAGAGAGCAGCGAACAGACTGAAATTGAGGATGCCCCAGCA GAGGCTTCACAGATCGAGACGGGAGAGCCTCCAGAGTTGCAAGAAGAGCTCCCAGAAGTCATGGAGGAGA CGAACAAAGAGCCTCCCATAGATGAGGTCCCAACGGAGGATGGAGATGCCCTCCTGAGTGAATCCATGGC AGTCCCAGACGAGCCCCTGGTCATCGATGACAAATCTGTCAGCCCAGCAGAGGAGGACAAAGAGAACACA GCAATCCCGCCAACTATCGGGGCCCTCCTCTCGGCCGAGCCCAGAGTCTCCTTCCCCACCATGTCAAAGA TGCTGACCATACCCGTCATCAAAACTGAGCCTTTGGACATCTCAGCATCTGGCCAGACGTCGTCAATCGG GCTGGCGTCATCTGGAATGGCATCAGCCATGTCGCAGATGAAAGAGGCCATGAGGAACGTATCTAGTGCC CCGATGACTTCGATGCTGCTTGCTGATGGCACCCCAGTGACAACGATGTTGGCACCCACATCATCATTGA CGAAAGACTTTCTCGAGGGCTGCAAGTGCCCTACCCCGGGCTGCGATGGAACAGGCCATGTCACCGGACT GTACCACCATCATCGCAGTCTTTCTGGATGTCCACACAGAGATAAGATTCCTCAGCAACTACTGCAGATG CACGAACACGTCCTGAACAGATGCCCGACACCGGGCTGCACAGGACGGGGGCATGTCAATAGCAACAGGA ACTCCCACAGGAGTTTATCCGGTTGTCCGATCGCCGCTGCCGAGAAGCACACCGGGGTCAAGCTGCCGCA GCAGCAGCAACCCCAGCAGCAGCCTGGCGATCCCATGAACCGGTTTGAAGGCATGCCCCACGTCGCAACC AGCCGCTCGGACCACATGGTGGCAGACATGCTCAACAGACCAGTGTGCTACGTAAAGCAGATGGACAGTG GCTACCAGGCATTCAACAACTCGGCACCCCGCCCAAGCTTGCCAGGGGACGTCCGCTTCAGCAAACCGGA TGGCGTGTTGCCCTTTGAAACCAAGGTGGCCTACAACACGGGCCACAAGCGCATCGCCCCCAAGATCATC ACGGCCAGTGACCTGAGCCCGCCGGTCAAGAAGAAGCTCCAGGCTGGAGATTACGACCCCAACGACTGCA CCATCGATTCCACCTCGGCCCGCATGGCAGCCACTGCCCTCAACTTGTCCATCAAGGCCCCTCAACTGGC TCCGGGGCAGCTGACCATCCCCATGCAGATGCCTCCCCCGTCCCATCCCCACTTAACCCCACAGAACGCC CACCAACACCCCCACTCACACCCCCAGCAGCATCACTCCCAGCAGCATCACCCCCAGCAGCATCACCCCC AAGCCCTGACCACCCCTCCTACCCAAATCTCGCAGCGTCCCCTTGAAACAGTCAAAGTGGACAGCAACGG CACCTTGGACCTCAGCATGAAGTCTAGCAAGTCATCGGAAGTGGCTTCCAACACCCATGCATCCAGTCAA AGTGTCCCGTCCCCGGCCTCGGTCCAATCAGCAGCCAATGGGCTGATCCAGCTCAGTGTACCCCAGCCCG GGGTCCAGAACCCCGTCCCCTCTTTCATCACCACAGCGCCCACCATCCTTCAGATCCCCCGGAGCTACGG CGAGCAGCCCATGGACTTCTCTACCAGCATGAGCAAGCCCCAGAAAGCCATCAAGGCTCCCAGTATTGCT GTGTCCTGCTTCCCAACCAGCCTGACCACCAGTTCCTCCATCACTGTCGCAGCCATGCTCAAGACCAGCA ATCCTGATTACGATGATCCCAGTAGTGGTGCGTTCATGCAATTTAACAAACCCCGCAAAATCAAGGGCAG TCTGGACGGGAAACGCGAGCATCTCAGTTGTCCCACCCCCGGCTGCGATGGATCGGGCCACGCGACTGGA AATTACGCCTCCCATAGAAGTATATCAGGGTGCCCCATGGCTGACAAATCTGCCATTGTTCAATCCACTC AGGAGCTTAAGTGCCCAACACCAGGTTGTGACGGCTCAGGCCACATCACAGGCAACTACACCTCCCATCG TAGCCTGTCAGGCTGCCCCCGGGCCAAGAAGCGCAGCGCCATGTATGCCGCGCAGAAGGCGCAGGCCCAG GCTGAGGCAAGCAATGAGGAGAACCCAGACGACCCCATGATGAGACTTCCCCTCCCCCTTTCTTTTATTA ACCCTCCCGGAACTGTTAACGATTACCAGTGGAGTGTGGCAGAGCTTGGCAGGTGTCCGGTTCCCAACTG TGACGGCTCGGGTCATCTGACGGGCAAGTACGCCTCGCATCGCAGCGCCTCGGGTTGCCCCAACGCCTCC AAGGTCTATCACAACTACTTACGGGAGGGATTTGTCGGCAGCGAGCATCCAGCCTCGCCTAGCGCCATCG CGCCAAAGCCCGTGAAGATGGAGCCCCAGAATTTGTCTAGTTGTCCGATACCTGGTTGTGATGGCTCGGG CCACTGTAACGGTAACTTCTCCTCTCACCGTAGCCTGTCGGGATGCCCCAAGGCCACCAGCGTCATGAAG AAAGCCAGGCTGAAGGAGGAGGAAATCACTGCCATCTCGATCAAAGCGGCACAAGGCATTGAGAATGACG AGGACATCCGTGCCCTGGACACAGAGATCACAGAGCTACAGCACAGCAATTGCCAGATGGAGTCACAGAT GATCAAGCTACGAACCCAGATCACCTCCATGGAAGGCAAGCTACACACGGCAGAGAAAGAGCACAACGCC ATGGAGGAGAAGCACCGGACGCTGACCCACCAGCTGGAGGAGTTGCGCAACACCCTCATCAAGCACCTGT CGGATGTCCAGAGCCAGACCGCCTCGGTCCCGCAACAAGCGGCCGCCCAGCTGCCCCCTCCTGCCTCGGG GACTGCAGCTCGGTCCGGACTGAGCCGGGAGAACATTGAGGCTTTCTTGACCACCTTGGAGACAACCGCC ACGGGGGGAGGCAGCGAGGATCGGCCGGAGACCCCACCTGAAGAAGACAGTGCCCCGATGGAGTTTGAGG CTCCTGAGGCTGCCACGGCAAAAACGGTGGCAGTGGTGGGATCGGCGACAGTCAACACCATTGCTGTGTC TGCTACGTAGACATGGCATCTAGTGAACAAACCATCCATCACAAGCAGATGTGGTTAGGCTGAGATAAAC ACCCCTGACTTGTTCCAGGACTGTCGGGATTCATTTTACTTAAGATTATGCTCATGGAAATCTGATACTC TAGAAGAGTTCCCAGATCCGTACAAAGGATGTACAACCCCAGTTGTATACCCAACATAGTGTACTCGGCC ACATATATGCATAAGCTTGATAGTGATAATACTTGTTTCATTTACATACATGAATATCATTTACACAGAA GATCAAACTCTCCAGAATCATTCAAATAACTGCAAGTGATGTTTTTGTGATTTTAATTTAAAAAGGATAC AGCAAACTGTTACTGTATCAGCCAAAGTGAAAAGTCTTTCACTTAAAATGTAACTCAAAACCCTTCAAGG AATTCTGGTAATTTTGGGATTCTTGAAAATTCTTTTTTCCATGCAATCGGGAAAAAGGCAATACGACTGT GTTTCACTGTGTGATTTAGTGCAATCATTGAAGTTCCACAGAATGTTGCAAGTTTTTCAGATCCACCAAG TTCCCCACGGGTAACAAATCGTTTGGATTAAAAACTCTAGCTGAACCTAATTGACCTCCTACTCGAATAT TCATAGCTCACAATGACCCTTGACCTATGAAGTCTCCAACCCACAGTAATAAGTTACTCTGATGCAGACC ATGATTTTTGTGAATGCTGAGTATTAGAATGTTCTTTGTTTTTCTAGGTTTTAATTATTTTTTCTACACA AAAAAAAACATAATTTGTACGTTCATAACAAGTCCAAACAATGTGTGCTTGTAAATAGAAAGATGTTTTT GTTCTTTCGTTTGTCAGGGTGTAAAAAAAAGTTGGACATTTTCTGTCTATGAAAATATAACTTTTCGACG TATTCCTTTTCTGCCTATTTCGAAAATGCAGATGTGTGCATGCCCTTCAAAGAAGTATAAATTTTGCTTT GATTTTTTGAGGATATTGAAATTAAATTTGAAATTCACTTACAAGTTAGTCTTTAGGTATTGGGAGGGGG GGATATTTTACACAGGGCAAAAACCAGTACTAAATGAAAAGAAAAGTTGGGGAAAAATCCTTTTAAATAA AAAGGACACAAGCAGTATAACTGTCTGTTGCTCAAGAAAAGCTTTTCCAATTGCTGTTCGGTTTCCAGTC AACGTGCGGAGTACCAGCCAGATCTGACCAATCAGATGGAGGGTATTATAAATAATTATGACTTTGATTT CTTTTAGCTTGTCTGGCATTGGCTAGTCAAAAAAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds