Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201855.1 PREDICTED: Patiria miniata myelin transcription factor 1-like (LOC119729257), transcript variant X8, mRNA TAGCAGAAAAGTTTCAGTGCGTTAAATCGTGCAGTGAAGGTCAAATCGCATGCTAATAAGAACGGAGACT TTTTTTGCAGCAACTTCCTGGCGGAAATTTTGCTCCAAACTGCCATTAGATACATGTTGAGTGACTCCAG AGGATAAGGTTGCAAAACAAAACTTTTTAAGTTCCATCATGAATGGAGAGGACAACACAAGGTCACGGGG TCGACTTATCGAGGGGTCAGAGGTCAGCCAATCCCCACGTCGCAGTCTGCGGTCAAAGTCTGGAAGCCCC GTAATTCTTCGCAAGGCAGCTGACGAACATTCGGAGAATCGTTCACCGAGAAAACACATTGCTCATTTAT CCAGCGAACATTCAGATGTTATTGTGAACGGCTCGTCGTTGGACGCCCCAGTCAAGGGACGCAGCAGGCT TGCTGAGCTCCGAGAGGCCGTGACCAGATCCCCCAGCAGAGACCAGACTAGCCGGGACCAAAGCATCATG GTCAGGGAGGCGACAGAAAACGAAGACAGGCCAAGAAGGACGCGGGCGACTGGACCAGCAGATCCAGTAC CAGAGCATACAGGGTGTCCCACACCAGGCTGTGACGGATCAGGACACACCAATGGCAAATTCTCTAAACA CAGAACACTTGTTAGTTGTCCTGTAGCATCCAAGAAGCGAAAACTTGGCTCCAAGCCCACTTCACCTGAG CCCCAGCGCAAGGCAAAGCGGTCGCGACGCCGTGGTGGTGGGGGCAACAACACCACCAGCAACCAAGAGG AAGTTGACGATGAAGTCATCATCAACAACAGACCAGCCACGAGGGGTGCGACAGCAGCAACAGACCCAGA GGACGAGAACTCGGTGTCATCATTAGATGATGACCCGCAGTCCAAATGTAGCCGGCGGGCCATCGTCAAC CTCCAGAAGCTCCTGGACAATGTGACGGCCGAGATCGATCAGGAGAAGAAGGGGGAAGAAGGGGTGGAGC CGACCAAGAAACCAGCAGAGGCAGAGGTGGAGGCAGAGGATGAGGAAGAAACCCTGCCTGATGAAGAGGA AGAGATGAAGGATGCGGTCAGCAAGGAGACGGAGACAGAAAAAGATGAGGAGTTGGAAGAAGATGCTGTC GAGGATGCCGAGGAAAAAGAGGAAGTGGAGGAGGATGCAGATGCTGAAGACGATGAAGAGGAAGAAGATG AGGAAGAAGAAGCGATGGAAGACGATGAAGTCCAATTGAACCTCTACAACTTTAAGAACATCAGCACCTC TGTCGGGACAGAGGACCAGGACGATGAAGAAGTCTGCACACCTCCTAAGCTTCACAAGGAACTGGCCTTT CTCAACCAGGAGGTATCTGTTCTGCAGGGCACTGCTGAATTGTCAAAGAGCTCCTCTGCTCCTGACGGTC TTGAAGCAAAAGACGGCCACTTGGACACCATGGATAAGGATGCTGGGGATGCCACAGGCACCGAGATGCC CACAGAGAACAGCGAAGATGATGCAGACGACGACGAAGATCAAATCCTAGAGCTGGTAGGGGAGGAATCA GGAGATGACGATGCCTTCTCCTCAGTCCCTCCCAAGCCCAAGGAGGCAGGCGACGAAGACGATGATGACT ACAACATTGCCATGCCGCAGCTGCCAAAGCATCTCCGTCTCATGAGTGAGCAGCTCTCCCAGGAGCTTGA GGAAGAAACCAAGAAGCACCAGTCTGATGAGAGCATCCCTCATCAGGAGGAAATCCCAGAAGAAGAACCT CCTCAGCCAGTTGACCAACTTATCCCGGCCATCACCACAGACCAAAACGCTGAAGCTGTTCAGGCAGAGA GCAGCGAACAGACTGAAATTGAGGATGCCCCAGCAGAGGCTTCACAGATCGAGACGGGAGAGCCTCCAGA GTTGCAAGAAGAGCTCCCAGAAGTCATGGAGGAGACGAACAAAGAGCCTCCCATAGATGAGGTCCCAACG GAGGATGGAGATGCCCTCCTGAGTGAATCCATGGCAGTCCCAGACGAGCCCCTGGTCATCGATGACAAAT CTGTCAGCCCAGCAGAGGAGGACAAAGAGAACACAGCAATCCCGCCAACTATCGGGGCCCTCCTCTCGGC CGAGCCCAGAGTCTCCTTCCCCACCATGTCAAAGATGCTGACCATACCCGTCATCAAAACTGAGCCTTTG GACATCTCAGCATCTGGCCAGACGTCGTCAATCGGGCTGGCGTCATCTGGAATGGCATCAGCCATGTCGC AGATGAAAGAGGCCATGAGGAACGTATCTAGTGCCCCGATGACTTCGATGCTGCTTGCTGATGGCACCCC AGTGACAACGATGTTGGCACCCACATCATCATTGACGAAAGACTTTCTCGAGGGCTGCAAGTGCCCTACC CCGGGCTGCGATGGAACAGGCCATGTCACCGGACTGTACCACCATCATCGCAGTCTTTCTGGATGTCCAC ACAGAGATAAGATTCCTCAGCAACTACTGCAGATGCACGAACACGTCCTGAACAGATGCCCGACACCGGG CTGCACAGGACGGGGGCATGTCAATAGCAACAGGAACTCCCACAGGAGTTTATCCGGTTGTCCGATCGCC GCTGCCGAGAAGCACACCGGGGTCAAGCTGCCGCAGCAGCAGCAACCCCAGCAGCAGCCTGGCGATCCCA TGAACCGGTTTGAAGGCATGCCCCACGTCGCAACCAGCCGCTCGGACCACATGGTGGCAGACATGCTCAA CAGACCAGTGTGCTACGTAAAGCAGATGGACAGTGGCTACCAGGCATTCAACAACTCGGCACCCCGCCCA AGCTTGCCAGGGGACGTCCGCTTCAGCAAACCGGATGGCGTGTTGCCCTTTGAAACCAAGGTGGCCTACA ACACGGGCCACAAGCGCATCGCCCCCAAGATCATCACGGCCAGTGACCTGAGCCCGCCGGTCAAGAAGAA GCTCCAGGCTGGAGATTACGACCCCAACGACTGCACCATCGATTCCACCTCGGCCCGCATGGCAGCCACT GCCCTCAACTTGTCCATCAAGGCCCCTCAACTGGCTCCGGGGCAGCTGACCATCCCCATGCAGATGCCTC CCCCGTCCCATCCCCACTTAACCCCACAGAACGCCCACCAACACCCCCACTCACACCCCCAGCAGCATCA CTCCCAGCAGCATCACCCCCAGCAGCATCACCCCCAAGCCCTGACCACCCCTCCTACCCAAATCTCGCAG CGTCCCCTTGAAACAGTCAAAGTGGACAGCAACGGCACCTTGGACCTCAGCATGAAGTCTAGCAAGTCAT CGGAAGTGGCTTCCAACACCCATGCATCCAGTCAAAGTGTCCCGTCCCCGGCCTCGGTCCAATCAGCAGC CAATGGGCTGATCCAGCTCAGTGTACCCCAGCCCGGGGTCCAGAACCCCGTCCCCTCTTTCATCACCACA GCGCCCACCATCCTTCAGATCCCCCGGAGCTACGGCGAGCAGCCCATGGACTTCTCTACCAGCATGAGCA AGCCCCAGAAAGCCATCAAGGCTCCCAGTATTGCTGTGTCCTGCTTCCCAACCAGCCTGACCACCAGTTC CTCCATCACTGTCGCAGCCATGCTCAAGACCAGCAATCCTGATTACGATGATCCCAGTAGTGGTGCGTTC ATGCAATTTAACAAACCCCGCAAAATCAAGGGCAGTCTGGACGGGAAACGCGAGCATCTCAGTTGTCCCA CCCCCGGCTGCGATGGATCGGGCCACGCGACTGGAAATTACGCCTCCCATAGAAGTATATCAGGGTGCCC CATGGCTGACAAATCTGCCATTGTTCAATCCACTCAGGAGCTTAAGTGCCCAACACCAGGTTGTGACGGC TCAGGCCACATCACAGGCAACTACACCTCCCATCGTAGCCTGTCAGGCTGCCCCCGGGCCAAGAAGCGCA GCGCCATGTATGCCGCGCAGAAGGCGCAGGCCCAGGCTGAGGCAAGCAATGAGGAGAACCCAGACGACCC CATGATGAGGTGTCCGGTTCCCAACTGTGACGGCTCGGGTCATCTGACGGGCAAGTACGCCTCGCATCGC AGCGCCTCGGGTTGCCCCAACGCCTCCAAGGTCTATCACAACTACTTACGGGAGGGATTTGTCGGCAGCG AGCATCCAGCCTCGCCTAGCGCCATCGCGCCAAAGCCCGTGAAGATGGAGCCCCAGAATTTGTCTAGTTG TCCGATACCTGGTTGTGATGGCTCGGGCCACTGTAACGGTAACTTCTCCTCTCACCGTAGCCTGTCGGGA TGCCCCAAGGCCACCAGCGTCATGAAGAAAGCCAGGCTGAAGGAGGAGGAAATCACTGCCATCTCGATCA AAGCGGCACAAGGCATTGAGAATGACGAGGACATCCGTGCCCTGGACACAGAGATCACAGAGCTACAGCA CAGCAATTGCCAGATGGAGTCACAGATGATCAAGCTACGAACCCAGATCACCTCCATGGAAGGCAAGCTA CACACGGCAGAGAAAGAGCACAACGCCATGGAGGAGAAGCACCGGACGCTGACCCACCAGCTGGAGGAGT TGCGCAACACCCTCATCAAGCACCTGTCGGATGTCCAGAGCCAGACCGCCTCGGTCCCGCAACAAGCGGC CGCCCAGCTGCCCCCTCCTGCCTCGGGGACTGCAGCTCGGTCCGGACTGAGCCGGGAGAACATTGAGGCT TTCTTGACCACCTTGGAGACAACCGCCACGGGGGGAGGCAGCGAGGATCGGCCGGAGACCCCACCTGAAG AAGACAGTGCCCCGATGGAGTTTGAGGCTCCTGAGGCTGCCACGGCAAAAACGGTGGCAGTGGTGGGATC GGCGACAGTCAACACCATTGCTGTGTCTGCTACGTAGACATGGCATCTAGTGAACAAACCATCCATCACA AGCAGATGTGGTTAGGCTGAGATAAACACCCCTGACTTGTTCCAGGACTGTCGGGATTCATTTTACTTAA GATTATGCTCATGGAAATCTGATACTCTAGAAGAGTTCCCAGATCCGTACAAAGGATGTACAACCCCAGT TGTATACCCAACATAGTGTACTCGGCCACATATATGCATAAGCTTGATAGTGATAATACTTGTTTCATTT ACATACATGAATATCATTTACACAGAAGATCAAACTCTCCAGAATCATTCAAATAACTGCAAGTGATGTT TTTGTGATTTTAATTTAAAAAGGATACAGCAAACTGTTACTGTATCAGCCAAAGTGAAAAGTCTTTCACT TAAAATGTAACTCAAAACCCTTCAAGGAATTCTGGTAATTTTGGGATTCTTGAAAATTCTTTTTTCCATG CAATCGGGAAAAAGGCAATACGACTGTGTTTCACTGTGTGATTTAGTGCAATCATTGAAGTTCCACAGAA TGTTGCAAGTTTTTCAGATCCACCAAGTTCCCCACGGGTAACAAATCGTTTGGATTAAAAACTCTAGCTG AACCTAATTGACCTCCTACTCGAATATTCATAGCTCACAATGACCCTTGACCTATGAAGTCTCCAACCCA CAGTAATAAGTTACTCTGATGCAGACCATGATTTTTGTGAATGCTGAGTATTAGAATGTTCTTTGTTTTT CTAGGTTTTAATTATTTTTTCTACACAAAAAAAAACATAATTTGTACGTTCATAACAAGTCCAAACAATG TGTGCTTGTAAATAGAAAGATGTTTTTGTTCTTTCGTTTGTCAGGGTGTAAAAAAAAGTTGGACATTTTC TGTCTATGAAAATATAACTTTTCGACGTATTCCTTTTCTGCCTATTTCGAAAATGCAGATGTGTGCATGC CCTTCAAAGAAGTATAAATTTTGCTTTGATTTTTTGAGGATATTGAAATTAAATTTGAAATTCACTTACA AGTTAGTCTTTAGGTATTGGGAGGGGGGGATATTTTACACAGGGCAAAAACCAGTACTAAATGAAAAGAA AAGTTGGGGAAAAATCCTTTTAAATAAAAAGGACACAAGCAGTATAACTGTCTGTTGCTCAAGAAAAGCT TTTCCAATTGCTGTTCGGTTTCCAGTCAACGTGCGGAGTACCAGCCAGATCTGACCAATCAGATGGAGGG TATTATAAATAATTATGACTTTGATTTCTTTTAGCTTGTCTGGCATTGGCTAGTCAAAAAAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
