Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT108550.1 TSA: Strongylocentrotus purpuratus WHL22.447009.1 mRNA sequence GCGCAGTAAACTTTGTAAACGAAAAGTTTTGCGAACGTAGGTCATTTCAGTCAATGTGTACAGAACTTGC ACCACGAGGAACCGCAATAGTAGACATATTTACGTCATTTTTGTACGGGATTTATCATTTGAAGATCATA GGAGCTGATCTGCGATGAGTTCTGATGCTACCCAATCCCCGAAGCGTACCCTTCGATCAGCCACCAACAG CCCCCTCAGGAGGAAACGAACATCACAGGTTGTTGAGAGGTGCAAAGACAGTAAATCACCATTGAGGAAT GGTTCACCCGTGAAAAACTCATCTGCAATGAAGAACCTGTTAGCCGAGAATGGTAATCTGATTTCCAGTG CAGTGAATAGCTCGAGAGTGAAGGGGAAAGCAGAGAGATCTGATTCACCAGTCTGTGACGGAGGCGCAGG AGACATGGTCAGGGAATCAGCAGATGGGGAGGAGCGTCGTCTGAGAAGCAGCGCTAAAGGACTTCCAGTG GAGCCTGCACCTGATATACAAAGCAGCTGTACGACGCGTGGTTGTGACGGGTCAGGGCATAGTGGAGGGA AATATACGAGACATAGAAGTGCAAACAGGTGTCCGATCGCAGCCAAGAAGAAAAAGGCAGAGCCCGAGCT TCCACCACCGGAGCCAGAGCCCAACAAAAGGATGAAGAGGTTGTCAAGGAAGCGAGGTGCCCCGCCCAGT AGCCAGGAGGAGACGGTGACAGCCGCCCCGACAGAGGAAGGCCCCACCAGTGCCAAGGTGCTGGCTCTGA ATCCAGACACGGACGATGCAAACTCCATCTCGAGTCAAGACGAGGATGTGCAAGCAAAGTGTAGCCGGAG AGCGATAGTCAACCTCCAGAGGTTGATTGATAACGTCACCGAAGAGATCAGACATGAGAAGGAGCAGGAG GAGGGAGTGGATGACAAAGAAGGAGGAGGAGGAGGAGGGGGCCAGAAGAGTGAAGATGTTGTTGCATCGA AAGAGACAGAGAAAGATGAGGTGGAGGATGCAGCGAAAGCAAGAGAGGAAGAAGAGGGAGAAGGGGGTGA GGATGGGGTTGGGGTTGGGGTTGGGGTTGGAGAGAAGGAAGCTGAAGGTATGGAAGTGGATGAGGAAGAA CAAGAAGAGGAGCAAGAAGTAGATGCAGCAGTGGAAGAAGAAAGCGGAGTGACAGAAGAGCAGAGTGCTG AAAAGGAAGAGACACAGGAGGAGGAGGAATGGACTGGTGAGCAAGATAAGATGGGTTCCATTGAGGATAC TGAGGAAAGTGTTGTGGAAGAGGAGGAGGAGGAGGAGGAGAAGGAAGACTCCTCCGTTACGGACGCAGAG ACGTGTGCTCCTCCTAAGCTCCACAAGGAGCTTGCATTCCTGAACCAAGATATGCCAGTCTTAGAGACGG CTCCCGACCTTGTGGGAAACAACTCTGTAGCATGTGAAGACAGTACCAACGGGACCGGGGAAGGGATGAA CGGAGGTCAGGGGGAGGGGGAGCGAGAGGTCACCCACGAGGGTGCGGATGAGGAGGAAATGTACGGTGAA GCCCCCTCGTTGGTCATCGATGAACAGGTGTCATCAAGAACTTCATCCAAGTTGGACGAGGAAGACGACA ACGGTTTGCCCATGCACCTGCGAGTTCTCAGTGAACAACTTTCCCAAGAACTTGAAGAGAATCGGAAGAA ACAGACAGTTGGTCCTGCCCCAGCGAGTTCTGTGCAATCACCCTCACCCGCTGAAACCCCCCAGGAGAGC GTCCCCACCCCAGTAGCCAGTGAAATTGTATCAGCTCCCCCAACAGAACAGGAGCAAGAGCAAGAGGAAG AGGAGGAGCTGCCGCTGCCATCGCCACCGCCACTAAGCAACGTAGGCATCCCTGAGACGGCCTTCTCACA CACAGCAAGCAATGTGGGCATCCCGCCGGAGACGGCCTTCTCACACACACCAAGCGACGTGGGTATCCCA GAGACGGCCTTCTCACACCCAAGCAATCTTGCCCTATCTCAGGATGCCTTGAACAACATGCTACCGATCA AGGTGTCCCAGATCAAACAAGAGGTGGTGGATCCCATGGACAGTGACATGGACATGGTTCCAGAAGATCA TCACATGATGTCTCGACTGATAAGTGACTCTCACAGAGCTCCACCCCCTGTCGTCCCGGTTACTGCTGCA TCAACAGCATTATCCACTGCCAGCTTGCCAGCGCCACCTGAACTGGGGAATATGGAGTGCAGTAAGTGTC CTACGCCTGGTTGTGATGGGACAGGGCATGTAACAGGCTTGTACAGCCATCATAGAAGTTTATCTGGTTG CCCTCACAAGGATAAAATCCCTCAACAGTTACTCCAATTACACGAACATGTACTAAAGTGTCCAACGCCC GGTTGTACTGGCAGAGGGCATGTCAACAGCAACAGGAACTCACATCGTAGTCTATCAGGCTGTCCTAAAG CCGCTGCGGAGAAGCTCTCAATGATGACGGGCCCCCCTCCTCCACCGAAATACCCAGGTGACAACAGAGT CCTTGGGAGACCAATGTACTTAAAGGAAGTGGACTCTTTAAGCGGGGTAACAACTCTATCTTCTGCCAAC ACACCTCGCACTACCCCTATGGAGAAGGTGAACCCCAAGCCATTCCCTGTAGAATCTATCATGGCATTCA ACCCAGCCACGGGACAGTTCACAGCAGCCAGCAGCCACAAGCGCATTGCCCCCAAGGTCATATCCGCTGC CGAGCTCCTGCCTCCCAGTAAACGTCCCGCGATGCCCAACGACGGGACAGTGGACAATCGGGAGGCGACT CTCGCAGCAGCGGCGATTAATCTCTCCTTGAAGTCCCTGCCTCCGGGGATGATGTCCCACCTGGCGTTCC CGATGCAGTTCCCGCCGCCGATGACCCCGCCCAGCTCTGTCCAGCAGCAGCCGTTGGACCTGGTCAAGAT GGACAGCAACGGCACTTTGGATCTGAGTATGAAGTCCACCAAGATGGACAGTCAACATCACCAGCCTCCT CTGACGCCGCTCTCTCATCTCCCTGGCCCTCTCCAAACAAGCACACCCCCACCGCAATCCCCTCTCCCTC TCCCCATGTCCACCCCGTCGAGTTTGGTTCAGCTCTCCATCCCTCAACCTATCATGCCCAATCCCATCTA CTCCGGAGCCTACTCCTTCCCGCCCATGTCTCCGCTGGTCCAGACATCCGCCAACAACAACTCGCCGACG ATCCTCCAGATCCCGCGGTCTTACGATCAGGCGGTGGACTTCTCCGCCTCCAAGAAGCCTCAGTATCCGC TCCTGACCAGCTTCCCGCATACCCCGTTGAGCGGTTCCCTGGCGTCCCTCACTAGTTCGTTGGCCTCTCT CCCGGGGTCGTTGCCGTGCAATGTTCCGCTGACCTCAGGAGGAGGCATCCTGACCCCCATAGCGCCCAAT GCTGTGGTGTCGACTGGTGGAAGCGTGTCTCTGACTGGCTTTGGCAAAGAAGAACCTTCCTTGTCTGGTT GCCCGATGGCAGATAAGTCCGCTATAATACCCGGATCCCAGGAATTAAAGTGCCCCACCCCCGGCTGTGA CGGCTCCGGTCATGCCACTGGGAACTACTCCTCTCATCGGAGTCTGTCAGGGTGTCCTAGAGCCAAGAAG AAGAGCTACACATCCTCGCCCAAGAAAGAAGGGGAGGAAGAAGGAGACGGACTCATCAAATGCCCCATCC CAGGCTGCGACGGATCAGGTCACGTCACCGGCAAGTACGCCTCTCACCGCAGCGCATCCGGGTGTCCCCG GGCCCTCCGAGCCGGCTACCAGGGACCCATGCAGACCGCACCCAAGGAAGGCGGCCCAGGGGGGCTCTCC CCCACCATGATGCAGAACGGGGCCGGTGGGATGGCCGTGATGGGGAACGGGGGCGTGATGATGGGCGTGG TCGGTAATGGTGCCGGTGGTATGAGTGGTATCACGGACGCGGTGTTACCCCTGAATCTTCTGAAGCCCAC CATGATGACCACCGAGGATAGCGGTATGATGGCCATGTCACCGGTGGTCATGGAGGAACAGGAGGAGCTA GAACCAATCGGACCAAGCTGTCCGACCCCAACCTGTGATGGATCTGGCCATGTCAACGGCTCCTCCCCAG ATCATCGTAGCATCTCAGGCTGCCCACTAGCTGCTCAAGCCATGAAGAAAGCAAGGCTCAACGGTGAAGA CATCACCTCGCTCTCTCACAAAAATGTCAAAGGAGTTGAGAATGATGAGGAGCTCTGGAACTTGGACATT GAGATCAACGAGCTTCAGTCCAGCAACTGCCAGATGGAGGCTCAGATGAGACGACTCAAGACACAGATCA CTACCATGGAGACCAAGCTACGTCAGGCAGAGCAGGAGCATCGAGCCATGGAGGAGAAGCACCGCTCTCT CACCGTGCAGCTGGACGGACTACGCAACACCCTCATCAGGCATCTCTCGGATGTCAAGAGTGTGGCCATG AGCAGTAGTCGCGAGGCCAGCCTGCTTGGTCCGAGCTATGAGCGTATGGAACAGTTCCTGGTCAGTCTGA AAGAACTTGACAACGATGCCAAGGACGCTGTGATGACCAACGGGGGCTTGTCCGGACGGGAGTCGGCCGC GGCTTCTTCGTTTCAGTCGGCAACGCCGCCTCCTTCGTTAGGCTCGTCGTCACCCCGGCTGGAGTCGGTG GAGAACACGCCTCTCACGCCCCCTCCGCAACCGGTCGACCTGACACCCCCGTCGCTGAGTAATGGTATCA TCCATCATTCAGATCAGCCTATGTCGACACCAGGGGTGGTTCGAACCAATGTGGTGCCAGTCACATGAAG GACTTCATTTAGTATGACTTGCACTCCCTCAGAATGTTATGGGTACTAACACCCCCATTTGAAGACAGTG GAGTACCTCCAAGAGTTGTGCATCCAATGTTGGAACGGGTTCTACCATTTTTTATATGAGTGAGGACACT TCTTGCAAGAGGGGTGATTTTATTCCATGTATATACTCTGCCTGTAGACCCCTCTAAGGGGCATTATAGG TTAATTTATTGAATGTACTATTATATGCAGCATTGTAAATAGTTAATAGTGTCAGTTAAACTGAAAATAA TTTGAAATGCCATTACCTTGATCCAGAAACAGGTTCTTAAGAGTTTTTCTTTCTTTTTTTTCTTGTTTTA TCCCCCCCCCCCAAGTATACGCTCTTCAAGTGGTAAATGCTCTCCTACACTTTAGGGTTATAGGAAAGGC ATATTGCTCTTGAAGACGTTGATTGAGCGAATGAAGGATCTCTGTTTCCTTCCCAATGATTTGACTTGAA GGATGTTTTATCGTAATCATCTCAATCTGTATAGAAAATGAAATCAATTATCAGCATTCACAGGATTTTG TTAAAAACAGCAGGATGTGCTGATCATGTAGCATGACCTTTCTAAAAATCATGACACTTGAAATAATTTA GGTTTCATCAAGGTCAGTTTCATAAGGGAATATTTTGAAATTTCTCTAAATAAATAAATTCTTGATAGAA TGAACTATTCATGAATGAAAATTAATCTTAGCTCATTGCCAAAATGAGCATGGAAATTGCTAATCCCCCC TCTTTCTATTCCCGAATATATTTGAGCCTTTGTGTGGAATTATTGGTAGGTTGGTAGATTAATTTAATTT AATTTATGAATTTTACATTAATCTTGATCTAAGGAGACACGAACGAAAGAGTAGATTGGATGGTCAATTC AACTTGTAAGCTCAAACATGAGTATACACACAACATAACAATCAGTTATTTTACTTATTGTTGCATGCCA AATGTTACAGACGATGATGATGAAGAAATGTCCATCTACATCACTTGGTGGACAATGAGGAGGCGCGATG GCTCAGTGGTAGAGCATTGGTCTTGTAACCGTGAGGTCACAGGTTCAAAACCAAGTCAATACTTGTGCCC TTTGATAAGGCATTAATCCTCATTACTAAGTCCCTCGGAGAGGACTTTAAGCCGTCGGTCCCCTGGTTGT TACCTTACAAGCGTGTACATGCTCTCTTTAATAGCAGTCGGGTAAAACAATCATCATCGTCATCTCTGTA CCTTGAAGTGAACTAAAGTAAAGTCTAGCAAAGATCACTTTTGTTCTTTGTTCCCGTTGAAAACTATTTC TCATTGAAACTTGTGCTAAAGTAAACCTCCACAGGAAGACCACCTGCTTACAAAGACCATACTCCTTGTC TCACTGGAGCATTCGTATACAGGTTTCACTGTACAAAATGCCGTTTTGATTTCAGTATATTCAATTTCCT CGCTTCATTTAAAAGGAGGTGGGGGGGGGGGGATTTTTGTTGTTGAAAAATTTGAATGTTATAATGCTGA AGCTAACCCAACCCCCATGAAATATCACATATACTATCTGTGCTTGTAACATTGATATTATCTCACTTTC TGTGAGAAAGATGGAATCCGATAGGCTAAGATAATATTGGCTCTAATTCTGTCATACGAAGGAGTGCTAT AGTATGCAACATATAGTGTGTATTTACTGCCAAATGTTAACAGTTTTCTTTTCATGGTTTTGTTAGTAAC TGAAAGATATATAATAATGGTACTACATTGATTGCATCTGTTGTGCATTGATGTGCTCTGAAAGTCATGC TATAAAAGATGTTTTCTAGAAACCGTAGTTGATAACTTGACAAACTGGTCATATTATCAAAGGAATTCTG TATTTATAACCATTGCACAATGTTGCTGGGTTTAAATTATTGATTTTCTTACTTTTGGGAAGGTAAGAAA ATAATGCATTGTCAAACAGAAAAATTTGAAAGTACTATTTCTGTGGAAGACTACTATTACTCATGAATTG TATATTTGTTGAATTGAAACTCTTAGAATTGACAAAGTACTAGTTTTTACAGATTAAGAACAACACATTT TTCTTTCTTTAAAGAAGCAATGTATTGAATAGTTATTTGGAGTATGCAAAGTGTTACAAATACATGTATA ATCAAATACAGTGTTTATTTATTTATTTAGATTCATACCAGTTCTACAAAAACCTTTGACATGTACTTGC AAATTGAGTTAGGTTACTAAATTTAGGGAATAGCCGTATTATATTTTGTGCATTGTTATGCTGAAATCTG ATATCTTTTGAAAATATTTCATGCAGATCATGCCATGCATCCCTCATAAATCCCTATGAGACATATGGCA TGTATTTTATCATTTCACACTATTTCTTTGGCTGAGTTTTTTGTTTTTGTTTTTGTTTTATTACTACCGT ACTACAAAAACAAAGAGCTTGATATCTTATAAACTTGGAGAAACATGAATCATTTAGCCTTCAGAATAGC GAGCATTACAATTTGCATTCATAGCATTGTAATGAGTGATGATATATTTTTGTGCAGGCCCTTATATTAA CATTGATGTTTGTATCTATTGGCGATAAATTATTGGGTTTGTTGTACCCCTCGCTTGCATTTATGGGTAC TATAGGCAATGAGAATGGTGCAAAAAGGGTGATAGTGCCAGAAGGGCTTTATGGCAATACATTGTACAGC ATCCCAGTTGGTTTTTGGTAAATAAAGGGTCTTAAGTCCTTTGTAGAGTTTCTGGACAAAGTGAGAGCCT AGCTCTGTCATGTTGGAGATAATGGCTTTCAACTTTGTGAAAAAAATGATAGTTTTGTCTGCTGAGACTC TGAAGGATATTGACTCACACTTTAACACAGAGTTAACACCCTTCTGGCTCTCAACAGGAGATGTAATGTT CTGAAATGAATGGATTTGAATGCGTCTAGATCAGAACATCTCTGGTTATCAGTAATAAGTTACTTTTCTT TCTGAATATCTTGATTTGGCAGCTTGTAAATCTGAAATAGTCAGGAAGAGCATTATACATCTCATTTTAT AGTTTTCTTCTTCTTCATCTTTGCTGCTTAGTGTTAATACACAGATGTTTAAACTTTCATTCATGTTGAG GTTCTTCTGTGAAAGCCATACCATTTCTTGGCCCATGAATTCAAGTCGATCTTTATAGCATACAGCTGTG AAGCAGAGAGCATGCAGCAGTTAAAATGAACTGAAATAGGTAGAGATTATGCGATGGATTATCCTTAATT CAATCACTTTCAGCATGCGTAGTAAAGCCAACTTTTCAATGATTTATTTTTCGTGACATTTAGAAGGATT CTAAGCGAATTCATTATCAGCATCCGCATTTTATGTTTTCAAACAGTTGCCAAAATTTATGTTGCGAAAT GTAGGAGAAACTACTTGAATATTCAATAAAGCTCCCAACTTTGGACTTTATTCAATATTTTCTGACACGT ATAGGATTCGTGTATGTAACCAACGAGGTAAAAAGAAATTCAGGAAAGAGTATTATGTTTTCATATTAGG GAGAAAAGTGCAATATTTTATGTGCTCTGTTGTGCTGTATTGTTTTCATTGGACATGTGTACTCTTACAT TTTTTTCCTTTTCTTCAGTTTCGCATGTTCTTAAATTTTCACAGGAGAGAAAAAGATAGTACTACTTTGA GACCAAATTAGAATGCTTTAGTGTTCTAAGAAGAGAGCTTGCTATTTTCATGTTATCAGATATATTTTGA CAAGGGTGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
