Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982809.1 PREDICTED: Strongylocentrotus purpuratus myelin transcription factor 1-like protein (LOC576799), transcript variant X3, mRNA CAGACGAAGCCATATTTTTTTTGTCTCGCTAAGCTAGTCATACGCACAAGAACTTGAAATATGTGCATTA CCATTTGATAGAGAGCTGCATAATTTGTCACTTTCGTTGGTTAAGAGTTACTGCCGTAAGAGTCTGAAAT TTAATTGGAATTGAACACAAAGAAAGCACAAACGAAACTTTGTTATGGATCCAAGTGCAACTGAAAACTC TTGATTGAACTGAGTCTGCGCAGTAAACTTTGTAAACGAAAAGTTTTGCGAACGTAGGTCATTTCAGTCA ATGTGTACAGAACTTCCACCACGAGGAACCGCAATAGTAGACATATTTACGTCGTTTTTGTACGGGATTT ATCATTTGAAGATCATAGGAGCTGATCTGCGATGAGTTCTGATGCTACCAATCCCCGAAGCGTACCCTTC GATCAGCCACCAACAGCCCCCTCAGGAGGAAACGAACATCACAGGTTGTTGAGAGGTGCAAAGACAGTAA ATCACCATTGAGGAATGGTTCACCCGTGAAAAACTCATCTGCAATGAAGAACCTGTTAGCCGAGAATGGT AATCTGATTTCCAGTGCAGTGAATAGCTCGAGAGTGAAGGGGAAAGCAGAGAGATCTGATTCACCAGTCT GTGACGGAGGCGCAGGAGACATGGTCAGGGAATCAGCAGATGGGGAGGAGCGTCGTCTGAGAAGCAGCGC TAAAGGACTTCCAGTGGAGCCTGCACCTGATATACAAAGCAGCTGTACGACGCGTGGTTGTGACGGGTCA GGGCATAGTGGAGGGAAATATACGAGACATAGAAGTGCAAACAGGTGTCCGATCGCAGCCAAGAAGAAAA AGGCAGAGCCCGAGCTTCCACCACCGGAGCCAGAGCCCAACAAAAGGATGAAGAGGTTGTCAAGGAAGCG AGGTGCCCCGCCCAGTAGCCAGGAGGAGACGGCGACAGCCGCCCCGACTGAGGAAGGCCCCACCAGTGCC AAGGTGCTGGCTCTGAATCCAGACACAGACGATGCTAACTCCATCTCGAGTCAAGACGAGGATGTGCAAG CAAAGTGTAGCCGGAGAGCGATAGTCAACCTCCAGAGGTTGATTGATAACGTAACGGAAGAGATCAGACA TGAGAAGGAGCAGGAGGAGGGAGTGGATGACAAAGAAGGAGGAGGAGGAGGAGGGGGCCAGAAGAGTGAA GATGTTGTTGCATCGAAAGAGACAGAGAAAGATGAGGCGGAGGATGCAGCGAAAACAAGAGAGGAAGAAG AGGGAGAAGGGGGTGAGGATGGGGTTGGGGTTGGGGTTGGAGAGAAGGAAGCTGAAGGTATGGAAGTGGA TGAGGAAGAACAAGAAGAGGAGCAAGAAGTAGATGCAGCAGTGGAAGAAGAAAGCGGAGTGACAGAAGAG CAGAGTGCTGAAAAGGAAGAGACACAGGAGGAGGAGGAATGGACTGGTGAACAAGATAAGATGGGTTCCA TTGAGGATACTGAGGAAAGTGTTGTGGAAGAGGAGGAGGAGGAGGAGGAGAAGGAAGACTCCTCTGTTAC GGACGCGGAGACGTGTGCTCCTCCTAAGCTCCACAAGGAGCTTGCATTCCTGAACCAAGATATGCCAGTC TTAGAGACGGCTCCCGACCTTGTGGGAAACAACTCTGTACCATGTGAAGACAGTACCAACGGGAGCGGGG AAGGGATGAACGGAGGTCAGGGGGAGGGGGAGCGAGAGGTCACCCACGAGGGTGCGGATGAGGAGGAAAT GTACGGTGAAGCCCCCTCGTTGGTCATCGATGAACAGGTGTCATCAAGAACTTCATCCAAGTTGGACGAG GAAGACGACAACGGTTTGCCCATGCACCTGCGAGTTCTCAGTGAACAACTTTCCCAAGAACTTGAAGAGA ATCGGAAGAAACAGACAGTTGGTCCTGTCCCAGCGAGTTCTGTGCAATCACCCTCACCCGCTGAAACCCC CCAGGAGAGCGTCCCCACCCCAGTAGCCAGTGAAATTGTATCAGCTCCCCCAACAGAACAGGAGCAAGAG CAAGAGGAAGAGGAGGAGCTGCCGCTGCCATCGCCACCGCCACTAAGCAACGTAGGCATCCCTGAGACGG CCTTCTCACACACAGCAAGCAATGTGGGCATCCCGCCGGAGACGGCCTTCTCACACACACCAAGCGACGT GGGTATCCCAGAGACGGCCTTCTCACACCCAAGCAATCTTGCCCTATCTCAGGATGCCTTGAACAACATG CTACCGATCAAGGTGTCCCAGATCAAACAAGAGGTGGTGGATCCCATGGACAGTGACATGGACATGGTTC CAGAAGATCATCACATGATGTCTCGACTGATAAGTGACTCTCACAGAGCTCCACCCCCTGTCGTCCCGGT TACTGCTGCATCAACAGCATTATCCACTGCCAGCTTGCCAGCGCCACCTGAACTGGGGAATATGGAGTGC AGTAAGTGTCCTACGCCTGGATGTGATGGGACGGGGCATGTTACAGGCTTGTACAGCCATCATAGAAGTT TATCTGGTTGCCCTCACAAGGATAAAATCCCTCAACAGTTACTCCAATTACACGAACATGTACTAAAGTG TCCCACGCCCGGTTGTACTGGCAGAGGGCATGTCAACAGCAACAGGAACTCACATCGTAGTCTATCAGGC TGTCCTAAAGCCGCTGCGGAGAAGCTCTCAATGATGACGGGTCCCCCTCCTCCACCGAAATACCCAGGTG ACAACAGAGTCCTTGGGAGACCAATGTACTTAAAGGAAGTGGACTCTTTAAGCGGGGTAACAACTCTATC TTCTGCCAACACACCTCGCACTACCCCTATGGAGAAGGTGAACCCCAAGCCATTCCCTGTAGAATCTATC ATGGCATTCAACCCTGCAACGGGACAGTTCACAGCAGCCAGCAGCCACAAGCGCATCGCCCCCAAGGTCA TATCCGCTGCCGAGCTCCTGCCTCCCAGTAAACGTCCCGCGATGCCCAACGACGGGACGGTGGACAATCG GGAGGCGACTCTCGCAGCAGCGGCGATTAATCTCTCCTTGAAGTCCCTGCCACCTGGGATGATGTCCCAC CTGGCGTTCCCGATGCAGTTCCCGCCTCCGATGACCCCGCCGAGCTCGGTCCAGCAGCAGCCGTTGGACC TGGTCAAGATGGATAGCAACGGCACTTTGGATCTGAGTATGAAGTCCACCAAGATGGACAGTCAACATCA CCAGCCTCCTCTGACGCCGCTCTCTCATCTCCCTGGCCCTCTCCAGACAAGCACACCCCCGCCGCAATCC CCTCTCCCTCTCCCCATGTCCACCCCGTCGAGTTTGGTTCAGCTCTCCATCCCTCAACCTATCATGCCCA ATCCCATCTACTCCGGAGCCTACTCCTTCCCGCCCATGTCTCCGCTGGTCCAGACATCCGCCAACAACAA CTCGCCGACGATCCTCCAGATCCCGCGGTCTTACGATCAGGCGGTGGACTTCTCCGCCTCCAAGAAGCCT CAGTATCCGCTCCTGACCAGCTTCCCGCATACCCCATTGAGCGGTTCCCTGGCGTCCCTCACTAGTTCGT TGGCCTCTCTCCCGGGGTCGTTGCCGTGCAATGTTCCGCTGACCTCAGGCGGAGGCATCCTGACCCCCAT AGCGCCCAATGCTGTGGTGTCGACTGGTGGAAGCGTGTCTCTGACTGGCTTTGGCAAAGAAGAACCTTCC TTGTCTGGTTGCCCGATGGCAGATAAGTCCGCTATAATACCCGGATCCCAGGAATTAAAGTGCCCCACCC CCGGCTGTGACGGCTCCGGTCATGCCACTGGTAACTACTCCTCTCATCGGAGTCTGTCAGGGTGTCCTAG AGCCAAGAAGAAGAGCTACACATCATCACCCAAGAAAGAAGGAGAGGAAGAAGGAGATGGTCTCATCAAA TGCCCCATCCCAGGCTGCGACGGATCAGGTCACGTCACTGGCAAGTACGCCTCGCACCGCAGCGCATCCG GGTGTCCCCGGGCCCTCCGAGCCGGCTACCAGGGACCCATGCAGACCGCACCCAAGGAAGGCGGCCCAGG GGGGCTCTCCCCCACCATGATGCAGAACGGGGCCGGTGGGATGGCCGTGATGGGGAACGGGGGCGTGATG ATGGGCGTGGTCGGTAATGGTGCCGGTGGTATGAGTGGTATCACGGATGCGGTGTTACCCCTCAATCTTC TGAAGCCCACCATGATGACCACCGAGGATAGTGGTATGATGGCCATGTCACCGGTGGTCATGGAGGAACA GGAGGAGCTAGAACCAATCGGACCAAGCTGTCCGACCCCAACCTGTGATGGATCTGGCCATGTCAACGGC TCCTCCCCAGATCATCGTAGCATCTCAGGCTGCCCACTAGCTGCTCAAGCCATGAAGAAAGCAAGGCTCA ACGGTGAAGACATCACCTCGCTCTCTCACAAAAATGTCAAAGGAGTTGAGAATGATGAGGAGCTCTGGAA CTTGGACATTGAGATCAACGAGCTTCAGTCCAGCAACTGCCAGATGGAGGCTCAGATGAGACGACTCAAG ACACAGATCACTACCATGGAGACCAAGCTACGTCAGGCAGAGCAGGAGCATCGAGCCATGGAGGAGAAGC ACCGCTCTCTCACCGTGCAGCTGGACGGACTACGCAACACCCTCATCAGGCATCTCTCGGATGTCAAGAG TGTGGCCATGAGCAGTAGTCGCGAGGCCAGCCTGCTTGGTCCGAGCTATGAGCGTATGGAACAGTTCCTG GTCAGTCTGAAAGAACTTGACAACGATGCCAAGGACGCTGTGATGACCAACGGGGGCTTGTCCGGACGGG AGTCGGCCGCGGCTTCTTCGTTTCAGTCGGCAACGCCGCCTCCTTCGTTAGGCTCGTCGTCACCCCGGCT GGAGTCGGTGGAGAACACGCCTCTCACGCCCCCTCCGCAACCGGTCGACCTGACACCCCCGTCGCTGAGT AATGGTATCATCCATCATTCAGATCAGCCTATGTCGACACCAGGGGTGGTTCGAACCAATGTGGTGCCAG TCACATGAAGGACTTCATTTAGTATGACTTGCACTCCCTCAGAATGTTATGGGTACTAACACCCCCATTT GAAGACAGTGGAGTACCTCCAAGAGTTGTGCATCCAATGTTGGAACGGGTTCTACCATTTTTTATATGAG TGAGGACACTTCTTGCAAGAGGGGTGATTTTATTCCATGTATATACTCTGCCTGTAGACCCCTCTAAGGG GCATTATAGGTTAATTTATTGAATGTACTATTATATGCAGCATTGTAAATAGTTAATAGTGTCAGTTAAA CTGAAAATAATTTGAAATGCCATTACCTTGATCCAGAAACAGGTTCTTAAGATTTTCTCTTATTTTATTT CTTGTTTTGTTTCCCCAAGTATACGCTCTTCAAATTGGAAAAACTTTCCTACACTTTAGGGTTATAGGAA AGGCATATTGATCTTTACGACGTGGATTGAGCAAATGAAGGATCTCTGTTTCCTTCCCAATGATTTGACT TGAAGGATGTTTTATCGTAATCATCTCAATCTGTATAGAAAATGAAATCAATTATCAGCATTCACAGGAT TTTGTTAAAAACAGCAGGATGTGCTGATCATGTAGCATGACCTTTCTAAAAATCATGACACTTGAAATAA TTTAGGTTTCATCAAGGTCAGTTTCATAAGGGAATATTTTGAAATTTCTCTAAATAAATAAATTCTTGAT AGAATGAACTATTCATGAATGAAAATTAATCTTAGCTCATTGCCAAAATGAGCATGGAAATTGCTAATCC CCCCTCTTTCTATTCCCGAATATATTTGAGCCTTTGTGTGGAATTATTGGTAGGTTGGTAGATTAATTTA ATTTAATTTATGAATTTTACATTAATCTTGATCTAAGGAGACACGAACGAAAGAGTAGATTGGATGGTCA ATTCAACTTGTAAGCTCAAACATGAGTATACACACAACATAACAATCAGTTATTTTACTTATTGTTGCAT GCCAAATGTTACAGACGATGATGATGAAGAAATGTCCATCTACATCACTTGGTGGACAATGAGGAGGCGC GATGGCTCAGTGGTAGAGCATTGGTCTTGTAACCGTGAGGTCACAGGCTCAAAACCAAGTCAATACTTGT GCCCTTTGATAAGGCATTAATCCTCATTACTAAGTCCCTCGGAGAGGACTTTAAGCCGTCGGTCCCCTGG TTGTTACCTTACAAGCGTGTACATGCTCTCTTTAATAGCAGTCGGGTAAAACAATCATCATCGTCATCTC TGTACCTTGAAGTGAACTAAAGTAAAGTCTAGCAAAGATCACTTTTGTTCTTTGTTCCCGTTGAAAACTA TTTCTCATTGAAACTTGTGCTAAAGTAAACCTCCACAGGAAGACCACCTGCTTACAAAGACCATACTCCT TGTCTCACTGGAGCATTCGTATACAGGTTTCACTGTACAAAATGCCGTTTTGATTTCAGTATATTCAATT TCCTCGCTTCATTTAAAAGGAGGTGGGGGGGGGGGATTTTTGTTGTTGAAAAATTTGAATGTTATAATGC TGAAGCTAACCCAACCCCATGAAATATCACATATACTATCTGTGCTTGTAACATTGATATTATCTCACTT TCTGTGAGAAAGATGGAATCCGATAGGCTAAGATAATATTGGCTCTAATTCTGTCATACGAAGGAATGCT ATAGTATGCAACATATAGTGTGTATTTACTGCCAAATGTTAACAGTTTTCTTTTCATGGTTTTGTTAGTA ACTGAAAGATATATAATAATGGTACTACATTGATTGCATCTGTTGTGCATTGATGTGCTCTGAAAGTCAT GCTATAAAAGATGTTTTCTAGAAACCGTAGTTGATAACTTGACAAACTGGTCATATTATCAAAGGAATTC TGTATTTATAACCATTGCACAATGTTGCTGGGTTTAAATTATTGATTTTCTTACTTTTGGGAAGGTAAGA AAATAATGCATTGTCAAACAGAAAAATTTGAAAGTACTATTTCTGTGGAAGACTACTATTACTCATGAAT TGTATATTTGTTGAATTGAAACTCTTAGAATTGACAAAGTACTAGTTTTTACAGATTAAGAACAACACAT TTTTCTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds