Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982810.1 PREDICTED: Strongylocentrotus purpuratus myelin transcription factor 1-like protein (LOC576799), transcript variant X4, mRNA CAGACGAAGCCATATTTTTTTTGTCTCGCTAAGCTAGTCATACGCACAAGAACTTGAAATATGTGCATTA CCATTTGATAGAGAGCTGCATAATTTGTCACTTTCGTTGGTTAAGAGTTACTGCCGTAAGAGTCTGAAAT TTAATTGGAATTGAACACAAAGAAAGCACAAACGAAACTTTGTTATGGATCCAAGTGCAACTGAAAACTC TTGATTGAACTGAGTCTGCGCAGTAAACTTTGTAAACGAAAAGTTTTGCGAACGTAGGTCATTTCAGTCA ATGTGTACAGAACTTCCACCACGAGGAACCGCAATAGTAGACATATTTACGTCGTTTTTGTACGGGATTT ATCATTTGAAGATCATAGGAGCTGATCTGCGATGAGTTCTGATGCTACCAATCCCCGAAGCGTACCCTTC GATCAGCCACCAACAGCCCCCTCAGGAGGAAACGAACATCACAGGTTGTTGAGAGGTGCAAAGACAGTAA ATCACCATTGAGGAATGGTTCACCCGTGAAAAACTCATCTGCAATGAAGAACCTGTTAGCCGAGAATGGT AATCTGATTTCCAGTGCAGTGAATAGCTCGAGAGTGAAGGGGAAAGCAGAGAGATCTGATTCACCAGTCT GTGACGGAGGCGCAGGAGACATGGTCAGGGAATCAGCAGATGGGGAGGAGCGTCGTCTGAGAAGCAGCGC TAAAGGACTTCCAGTGGAGCCTGCACCTGATATACAAAGCAGCTGTACGACGCGTGGTTGTGACGGGTCA GGGCATAGTGGAGGGAAATATACGAGACATAGAAGTGCAAACAGGTGTCCGATCGCAGCCAAGAAGAAAA AGGCAGAGCCCGAGCTTCCACCACCGGAGCCAGAGCCCAACAAAAGGATGAAGAGGTTGTCAAGGAAGCG AGGTGCCCCGCCCAGTAGCCAGGAGGAGACGGCGACAGCCGCCCCGACTGAGGAAGGCCCCACCAGTGCC AAGGTGCTGGCTCTGAATCCAGACACAGACGATGCTAACTCCATCTCGAGTCAAGACGAGGATGTGCAAG CAAAGTGTAGCCGGAGAGCGATAGTCAACCTCCAGAGGTTGATTGATAACGTAACGGAAGAGATCAGACA TGAGAAGGAGCAGGAGGAGGGAGTGGATGACAAAGAAGGAGGAGGAGGAGGAGGGGGCCAGAAGAGTGAA GATGTTGTTGCATCGAAAGAGACAGAGAAAGATGAGGCGGAGGATGCAGCGAAAACAAGAGAGGAAGAAG AGGGAGAAGGGGGTGAGGATGGGGTTGGGGTTGGGGTTGGAGAGAAGGAAGCTGAAGGTATGGAAGTGGA TGAGGAAGAACAAGAAGAGGAGCAAGAAGTAGATGCAGCAGTGGAAGAAGAAAGCGGAGTGACAGAAGAG CAGAGTGCTGAAAAGGAAGAGACACAGGAGGAGGAGGAATGGACTGGTGAACAAGATAAGATGGGTTCCA TTGAGGATACTGAGGAAAGTGTTGTGGAAGAGGAGGAGGAGGAGGAGGAGAAGGAAGACTCCTCTGTTAC GGACGCGGAGACGTGTGCTCCTCCTAAGCTCCACAAGGAGCTTGCATTCCTGAACCAAGATATGCCAGTC TTAGAGACGGCTCCCGACCTTGTGGGAAACAACTCTGTACCATGTGAAGACAGTACCAACGGGAGCGGGG AAGGGATGAACGGAGGTCAGGGGGAGGGGGAGCGAGAGGTCACCCACGAGGGTGCGGATGAGGAGGAAAT GTACGGTGAAGCCCCCTCGTTGGTCATCGATGAACAGGTGTCATCAAGAACTTCATCCAAGTTGGACGAG GAAGACGACAACGGTTTGCCCATGCACCTGCGAGTTCTCAGTGAACAACTTTCCCAAGAACTTGAAGAGA ATCGGAAGAAACAGACAGTTGGTCCTGTCCCAGCGAGTTCTGTGCAATCACCCTCACCCGCTGAAACCCC CCAGGAGAGCGTCCCCACCCCAGTAGCCAGTGAAATTGTATCAGCTCCCCCAACAGAACAGGAGCAAGAG CAAGAGGAAGAGGAGGAGCTGCCGCTGCCATCGCCACCGCCACTAAGCAACGTAGGCATCCCTGAGACGG CCTTCTCACACACAGCAAGCAATGTGGGCATCCCGCCGGAGACGGCCTTCTCACACACACCAAGCGACGT GGGTATCCCAGAGACGGCCTTCTCACACCCAAGCAATCTTGCCCTATCTCAGGATGCCTTGAACAACATG CTACCGATCAAGGTGTCCCAGATCAAACAAGAGGTGGTGGATCCCATGGACAGTGACATGGACATGGTTC CAGAAGATCATCACATGATGTCTCGACTGATAAGTGACTCTCACAGAGCTCCACCCCCTGTCGTCCCGGT TACTGCTGCATCAACAGCATTATCCACTGCCAGCTTGCCAGCGCCACCTGAACTGGGGAATATGGAGTGC AGTAAGTGTCCTACGCCTGGATGTGATGGGACGGGGCATGTTACAGGCTTGTACAGCCATCATAGAAGTT TATCTGGTTGCCCTCACAAGGATAAAATCCCTCAACAGTTACTCCAATTACACGAACATGTACTAAAGTG TCCCACGCCCGGTTGTACTGGCAGAGGGCATGTCAACAGCAACAGGAACTCACATCGTAGTCTATCAGGC TGTCCTAAAGCCGCTGCGGAGAAGCTCTCAATGATGACGGGTCCCCCTCCTCCACCGAAATACCCAGGTG ACAACAGAGTCCTTGGGAGACCAATGTACTTAAAGGAAGTGGACTCTTTAAGCGGGGTAACAACTCTATC TTCTGCCAACACACCTCGCACTACCCCTATGGAGAAGGTGAACCCCAAGCCATTCCCTGTAGAATCTATC ATGGCATTCAACCCTGCAACGGGACAGTTCACAGCAGCCAGCAGCCACAAGCGCATCGCCCCCAAGGTCA TATCCGCTGCCGAGCTCCTGCCTCCCAGTAAACGTCCCGCGATGCCCAACGACGGGACGGTGGACAATCG GGAGGCGACTCTCGCAGCAGCGGCGATTAATCTCTCCTTGAAGTCCCTGCCACCTGGGATGATGTCCCAC CTGGCGTTCCCGATGCAGTTCCCGCCTCCGATGACCCCGCCGAGCTCGGTCCAGCAGCAGCCGTTGGACC TGGTCAAGATGGATAGCAACGGCACTTTGGATCTGAGTATGAAGTCCACCAAGATGGACAGTCAACATCA CCAGCCTCCTCTGACGCCGCTCTCTCATCTCCCTGGCCCTCTCCAGACAAGCACACCCCCGCCGCAATCC CCTCTCCCTCTCCCCATGTCCACCCCGTCGAGTTTGGTTCAGCTCTCCATCCCTCAACCTATCATGCCCA ATCCCATCTACTCCGGAGCCTACTCCTTCCCGCCCATGTCTCCGCTGGTCCAGACATCCGCCAACAACAA CTCGCCGACGATCCTCCAGATCCCGCGGTCTTACGATCAGGCGGTGGACTTCTCCGCCTCCAAGAAGCCT CAGTATCCGCTCCTGACCAGCTTCCCGCATACCCCATTGAGCGGTTCCCTGGCGTCCCTCACTAGTTCGT TGGCCTCTCTCCCGGGGTCGTTGCCGTGCAATGTTCCGCTGACCTCAGGCGGAGGCATCCTGACCCCCAT AGCGCCCAATGCTGTGGTGTCGACTGGTGGAAGCGTGTCTCTGACTGGCTTTGGCAAAGAAGAACCTTCG TGCCCCACCCCCGGCTGTGACGGCTCCGGTCATGCCACTGGTAACTACTCCTCTCATCGGAGTCTGTCAG GGTGTCCTAGAGCCAAGAAGAAGAGCTACACATCATCACCCAAGAAAGAAGGAGAGGAAGAAGGAGATGG TCTCATCAAATGCCCCATCCCAGGCTGCGACGGATCAGGTCACGTCACTGGCAAGTACGCCTCGCACCGC AGCGCATCCGGGTGTCCCCGGGCCCTCCGAGCCGGCTACCAGGGACCCATGCAGACCGCACCCAAGGAAG GCGGCCCAGGGGGGCTCTCCCCCACCATGATGCAGAACGGGGCCGGTGGGATGGCCGTGATGGGGAACGG GGGCGTGATGATGGGCGTGGTCGGTAATGGTGCCGGTGGTATGAGTGGTATCACGGATGCGGTGTTACCC CTCAATCTTCTGAAGCCCACCATGATGACCACCGAGGATAGTGGTATGATGGCCATGTCACCGGTGGTCA TGGAGGAACAGGAGGAGCTAGAACCAATCGGACCAAGCTGTCCGACCCCAACCTGTGATGGATCTGGCCA TGTCAACGGCTCCTCCCCAGATCATCGTAGCATCTCAGGCTGCCCACTAGCTGCTCAAGCCATGAAGAAA GCAAGGCTCAACGGTGAAGACATCACCTCGCTCTCTCACAAAAATGTCAAAGGAGTTGAGAATGATGAGG AGCTCTGGAACTTGGACATTGAGATCAACGAGCTTCAGTCCAGCAACTGCCAGATGGAGGCTCAGATGAG ACGACTCAAGACACAGATCACTACCATGGAGACCAAGCTACGTCAGGCAGAGCAGGAGCATCGAGCCATG GAGGAGAAGCACCGCTCTCTCACCGTGCAGCTGGACGGACTACGCAACACCCTCATCAGGCATCTCTCGG ATGTCAAGAGTGTGGCCATGAGCAGTAGTCGCGAGGCCAGCCTGCTTGGTCCGAGCTATGAGCGTATGGA ACAGTTCCTGGTCAGTCTGAAAGAACTTGACAACGATGCCAAGGACGCTGTGATGACCAACGGGGGCTTG TCCGGACGGGAGTCGGCCGCGGCTTCTTCGTTTCAGTCGGCAACGCCGCCTCCTTCGTTAGGCTCGTCGT CACCCCGGCTGGAGTCGGTGGAGAACACGCCTCTCACGCCCCCTCCGCAACCGGTCGACCTGACACCCCC GTCGCTGAGTAATGGTATCATCCATCATTCAGATCAGCCTATGTCGACACCAGGGGTGGTTCGAACCAAT GTGGTGCCAGTCACATGAAGGACTTCATTTAGTATGACTTGCACTCCCTCAGAATGTTATGGGTACTAAC ACCCCCATTTGAAGACAGTGGAGTACCTCCAAGAGTTGTGCATCCAATGTTGGAACGGGTTCTACCATTT TTTATATGAGTGAGGACACTTCTTGCAAGAGGGGTGATTTTATTCCATGTATATACTCTGCCTGTAGACC CCTCTAAGGGGCATTATAGGTTAATTTATTGAATGTACTATTATATGCAGCATTGTAAATAGTTAATAGT GTCAGTTAAACTGAAAATAATTTGAAATGCCATTACCTTGATCCAGAAACAGGTTCTTAAGATTTTCTCT TATTTTATTTCTTGTTTTGTTTCCCCAAGTATACGCTCTTCAAATTGGAAAAACTTTCCTACACTTTAGG GTTATAGGAAAGGCATATTGATCTTTACGACGTGGATTGAGCAAATGAAGGATCTCTGTTTCCTTCCCAA TGATTTGACTTGAAGGATGTTTTATCGTAATCATCTCAATCTGTATAGAAAATGAAATCAATTATCAGCA TTCACAGGATTTTGTTAAAAACAGCAGGATGTGCTGATCATGTAGCATGACCTTTCTAAAAATCATGACA CTTGAAATAATTTAGGTTTCATCAAGGTCAGTTTCATAAGGGAATATTTTGAAATTTCTCTAAATAAATA AATTCTTGATAGAATGAACTATTCATGAATGAAAATTAATCTTAGCTCATTGCCAAAATGAGCATGGAAA TTGCTAATCCCCCCTCTTTCTATTCCCGAATATATTTGAGCCTTTGTGTGGAATTATTGGTAGGTTGGTA GATTAATTTAATTTAATTTATGAATTTTACATTAATCTTGATCTAAGGAGACACGAACGAAAGAGTAGAT TGGATGGTCAATTCAACTTGTAAGCTCAAACATGAGTATACACACAACATAACAATCAGTTATTTTACTT ATTGTTGCATGCCAAATGTTACAGACGATGATGATGAAGAAATGTCCATCTACATCACTTGGTGGACAAT GAGGAGGCGCGATGGCTCAGTGGTAGAGCATTGGTCTTGTAACCGTGAGGTCACAGGCTCAAAACCAAGT CAATACTTGTGCCCTTTGATAAGGCATTAATCCTCATTACTAAGTCCCTCGGAGAGGACTTTAAGCCGTC GGTCCCCTGGTTGTTACCTTACAAGCGTGTACATGCTCTCTTTAATAGCAGTCGGGTAAAACAATCATCA TCGTCATCTCTGTACCTTGAAGTGAACTAAAGTAAAGTCTAGCAAAGATCACTTTTGTTCTTTGTTCCCG TTGAAAACTATTTCTCATTGAAACTTGTGCTAAAGTAAACCTCCACAGGAAGACCACCTGCTTACAAAGA CCATACTCCTTGTCTCACTGGAGCATTCGTATACAGGTTTCACTGTACAAAATGCCGTTTTGATTTCAGT ATATTCAATTTCCTCGCTTCATTTAAAAGGAGGTGGGGGGGGGGGATTTTTGTTGTTGAAAAATTTGAAT GTTATAATGCTGAAGCTAACCCAACCCCATGAAATATCACATATACTATCTGTGCTTGTAACATTGATAT TATCTCACTTTCTGTGAGAAAGATGGAATCCGATAGGCTAAGATAATATTGGCTCTAATTCTGTCATACG AAGGAATGCTATAGTATGCAACATATAGTGTGTATTTACTGCCAAATGTTAACAGTTTTCTTTTCATGGT TTTGTTAGTAACTGAAAGATATATAATAATGGTACTACATTGATTGCATCTGTTGTGCATTGATGTGCTC TGAAAGTCATGCTATAAAAGATGTTTTCTAGAAACCGTAGTTGATAACTTGACAAACTGGTCATATTATC AAAGGAATTCTGTATTTATAACCATTGCACAATGTTGCTGGGTTTAAATTATTGATTTTCTTACTTTTGG GAAGGTAAGAAAATAATGCATTGTCAAACAGAAAAATTTGAAAGTACTATTTCTGTGGAAGACTACTATT ACTCATGAATTGTATATTTGTTGAATTGAAACTCTTAGAATTGACAAAGTACTAGTTTTTACAGATTAAG AACAACACATTTTTCTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds