Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003728844.3 PREDICTED: Strongylocentrotus purpuratus sodium bicarbonate cotransporter 3 (LOC580912), transcript variant X4, mRNA AGCCAAGTACGTGGGCCATACAATGAGGAATGTGTCATAAAAGAAGTTTACTAGCTACTACACCATTTTG CATCGTCGATCGCAGGGTTACGTTTTGGAGTGGTGTTTTGATTTCTATTTTAAAAGAAAACTTGATTTTG AGGACCATAACATATAATGTCTTTCCACCAAATTCAAGTGTATCGCCGGCGTCCTTTAGACTTGGGAGAA TGTAGTTTTGACGATGATCGTATTTCGACGTCGACCAAGATCGACGTCCCTGTCTTGTCTATGGACAGAG GGTTGTTGCAAGAATCACCGGTATCATCTCGAATCCGAAGAGCTCGGGGCAACATGAACGGGCCTGTCGG AGACGACACAGACGTGGTGGTGGATACGGGAGCTGGACGAGCCAGTCGACACATCGACAACAAGGACATA TCAAACCACCGATCAGGAGAGATGTACGCAGGTACTGATGGACCGGACCGGAAGAAAGGTCACCAGAACG GTCATGCTAACCCGGTCAGCAACGGACCAAACTCCCCACAGAGTCCAGCGGCCCAAATGAACTTTGAAAA CGAGGTTGGAGAGACCCCATTACAGCGTGTGCAGTTCTTGTTGGGTGGTGATGGAGAGGGTCGTCAGAAG GACACTCCACCAGTCTACTCTGAAATGGAAGAGTTGTTTTATGATAAAGAGGGTCGTTTACTCGAATGGA AAGAAACTGCAAGATGGGTGAAGTACGAGGAGAACGTCGAGCACGGGGCCGGCCGTTGGAGTAAGCCTCA CGTCGCCACCCTATCCCTTCACAGTCTCTTCGAGCTCAGGAAGTTCATCAGGAACGGTGGGGTCCAACTC GACATGGTGGCAGACGATCTGGAACAAATCATTGATCTCGCACTGGACAACCTGGTTGCCACAAACGTCT TGGAGGAGGACCAGCGAATCATCGCTCGCGAAGCTCTCCTTACCCGTCATCGTCACCACAAACAGAAGAA GAAGAAGGAGCCCGAAAACAAAGCCTACAACAAAGGTCGCAGAAAAAGCAGCATGTTCCCGGGTATGGAC CGCGCCATGTCCGATATCGGCCGCAGCCAATCCACCGGAAACAACACAGTCAGCATGGAACAAGAAGCAC AAGAAAAGGATGGAGAGATGAGGAAAAACTCAAGCGCCAATGCTCTGTCGAAGATGCCCGATGGCGCCCG AACCGAGAGCCGAGGGTCTGTCGGCAGAGTCGGCACATCGGACAGCCTCGATCAGAAGGAGAAAGAGGTT AAGAATGAGAAGGCGAAGTTCCTTCGTAAGATCCCAGCTGGTGCCGAGGCTTCCAATGTACTCGTGGGCG AAGTCGACTTCGTTGAGAAGCCCATGGTCGCCTTCATCCGCCTCAACGAAGGCAAGGTGTTATCGGAGAT TACCGAAGTGCCCATCCCGACCCGTTTCGTCTTCCTACTGCTCGGGCCACCTACAACTGACAAGAAGAAG TACCGTGAAATCGGTCGTTGCATGGCAACCCTTATGACAGACGATGTCTTCCACGAAGTGGCCTACAAAG CAAGAGACAGGGAAGATCTGCTAGCTGGTCTGGATGAGTTCTTAGAACAGGTCACTGTACTTCCTCCAGG TACCTGGGATCCTAACATCCGTATCGAGCCTCCCAAGCAGACACTATCCTCTGAAATGAGGAGACAATCT CAGCACTTCACCCATCCAATCGACATCATCAAGGAAGAAGAAGAAGACAAGGTCGAGCTAGCAAGAACAG GAAGACTATTCGGTGGTCTCATCAACGACATCAAGAAGAAAGCACCCTTCTACTGGAGCGAATATTACCA CGCCCTCAACATACAATGTTTGGCCTCCTTCGTCTTCATGTACATCGCCTGCATCACTCCCATCATCACC TTTGGTGGGTTGCTAGGCGATGCCACCGAGGACTATATCGCGGCCTTTGAGAGTTTGATTGGAGCGGCTA TCTGTGGAGTTGTCTATCATATCTTCTCTGGTCAACCTCTCACGATTATTGGTAGTACGGGACCCATCCT CATCTTTGAAACCATCATGTACCAACTCTGCGGATCGTTTGGGATTGATTACATCTCGTTCCGTGTTTGG ATCGGGTTCTGGACCTGTGTTATCTGTATCGTGTTGGTTGCTACGGACGCTAGTGCCTTGGTTCGTTACT TCACCCGATTCACCGAAGAAGCCTTCTCTTCTCTCATATCCTTCATCTTCATTGTGGAGGCCTTTGAGAA CCTGTTTGAGATCAGCCACGAGTACCCAATCAAGACTCATGTGAAACTGGGCGAGTACTTCGAAGAGCAC TCCACGAACGTTACCGACATGTGCATGTGCGAGTACGAGAACGAGACCATCGATCCCGCCATGTACAACT GGACAGAAAAACTCACCGAGGAGGACTGCAAGACCGTCAACGGGACCCTTGTCGGAGACTGTGAAACCCA TCACGAAGCTGTCCCGGATGTGTTCTTGTTCTCTTGCGCCCTCTTCTTTGGCACCTTCGTCCTCTCCTAC GCCCTCAAGAACTTCCGCAACGCCAACTTCTTCCCCACCAAGGTTCGCTACATCATCAGTGACTTTGGAG TCTTCATGGCTTTCCTGGCTATGACTGGAATTGATATCTGGGTCGGCATCCCCACCCCCAAGCTCACTGT ACCAGATACATTCAGGCCTACCCGCGCAGACCGTGGATGGGTCATCCCTCTCTTCAACAACCCATGGTGG ACTTACTTCGCAGCCATCGTCCCGGCCCTTCTCTGTTCCATCCTCATCTTCATGGACCAACAGATCACTG CCGTCATCGTCAACCGTCGAGAGAACAAACTTAAGAAAGGATTCGGCTACCATCTCGATCTGCTCGTCAT CGCCATCCTCCTCTTCGTCATGTCCGTGCTTGGTATGCCCTGGTTCGTCGCCGCTACCGTTCTCTCCATC AACCACGTCGACAGCTTGCGTGTCATGTCCGATACCACCATCCCCGGAGAACCCCCTAAGGTCGTAGGAT GCAGGGAGCAGCGTATTACAGGTATCCTTGTGTTTGCCATGATCGGTATATCCAGTCTGCTGACTTCAGT TCTTAAGTTCATCCCCATGCCCGTACTCTTTGGTGTCTTCTTGTATATGGGTATCTCATCTCTGCGTGGC GTACAGTTCGTGGACCGTATGATGTTGTACCTGATCCCAGCCAAACATCAGCCTGACTATGTCTATCTGC GTCATGTCAAGCTATGGAGGGTCCATCTCTTCACACTGGTCCAACTCACCTGCCTGGTCCTGCTCTGGCT CATCAAGACATCCAAGGCTTCCATCGTCTTCCCTCTCATGGTATTGGCTGTTGTGTTTGTTCGTAAACTC CTGGAATTCGTCTTCACTCAATACGAACTGAATGTACTTGATGACGTCATCCCTGAGAGTCAGAAGCGCG CCAAGGATGATGAGGAAAAACATCTCGAGGATCAACGCGAGCAGGAGTCATTCTGTTCTGATTATAAAGG TTTAATCAAAGGCCATTGGAAAAATCTCGACAAATACAATGTCATGCATCGCGCGGCGTCTAAAACAATC AAGGATCCTGAAGCGAATCCGGGAGCGAACACCGAAGAAGGAATCGACCTCCCCAGTGGTACCGGTACCT CAAGTTTCGGTGTTCAGGCTGACATGGACGATACGCGATTTTAAAGAAAGAGAGACATAACAAAAATCCC TGCTGAAATGGAGGTGCTTTCAAGTTTGTTGTTGACTATTCTCTGGTGTTAACCTGAAATCCACGGTTTA AAAGATCGTGTTAGAATGTACTTCTGGATTCACATGTTGGCTTTGGTATTTGGTGTAATATAGATGCCCC AACACCCCCCCCCCCCCCCTCCCCACAAGAAAAGTAAAAACATAGGTTGATCTAACACCAAAGTTCTTGG TCTACATTTGGCTACATTTGATGATAACACCATCCAAAATTCTTTTCAATTTTCATCTCAATACCGACTA AATCCTAGCAATCTAGCAAGATGGCAGACTGTTGTGTGTTGTTCAATTTGATTTTACACCAGACTTCAGG AAAAAAACACCCTACTTGAAATCACCCTAAATATGATTACATTAATCATATCCTGATCAATGCGAGTTCT CCAGAAGTCGAAGGATAATAACGACTATCAAAGTCGATTGGATTTGAATTAGATTAATCAATAAATGGTA TATTCTTTTCTTCCGGATTATCTCGTTGAAAAAAATAGCATATCAAGTGCAGTATCATGTGTTTCGTGAT TTTGTATTCTTATTTGAATTCACAAATTAATTGAATTTCACACTATTTCGGCTTCCATGTTAATCAAATA TTGTATTCATTTTAATTTCATTTCACTCGTGTGTGAAATCATATTTATCGCCACTTCGCTATATCAGAAA AAAAAGAAGCATTTATTGAATTTGGAAACGGTATTCATGTGGTTATACTACTATGGCGTTTAGTTTGTTT TAGATATTCGAAATGACATGAAATATGGTGTGTGCTTTGTGCGTAGATATCCGTTTTGTGAAATAATTAT ATTTGCCTTTCTCTCAATTCATATGACGTATAACGGATGAAATTTTAAATTTGTTAACGAGTCACTAACT TCTCTGCGCGATCTTCATGTTCATGTTTTTCTCGTGTAAATATTCACCAGCACAAAATAAAAATGTCAAG AACAAAATTTCACGCCGTGATACTATGCAAAAAGATGACATTGTATGTATAATGAAATTTAATGAATTCA CGTGTGTATTGAGTCTTTCTTATGATTAGTCTTTCAAAGCAATTTAAAACAAATTCAATAATGAATGCAA TGCTATATTTTTCTATTTCTATTTGATGATTTTGTGAGTTACGAAACATAAATGCCAATGTCTTTCTGAA GATTTGTTTTAGAATTGTCCATGATTAAAACATTCATTCCAATACACTACTTGAATACTTTAAATACATG TAACATTCATCTTCCATAGTGATTTTAAGGTGCTGAGTACAATAAATGTTTTATTTTGCAATATTTTGAA TAAAATGTGCTGCAGTAAACCAGAATTGAATCATGAATTGATTTTCAACAAATAATGCACTTCAGAGCAG TTGCAATTGTAATTATAGAATGATAAAAGCGGAATAATTTAATTTGTATTAGATAGCTTTACCGTTTTTA ATGATCATTAACGTTTTTAACTTATTTCTCTCATTAATCTTGTTGGCCCATACCCATTAATGTCATTATT TGCTTTTACTGTCGAAGTATATTTTCTATTTGCTCGGTGATATTATTTTAGTAGTATACCGTATGGTTTT AGCTGTCTTGAAATATTCGCTTTTTACCCATGTTTTCTATGTTTACCAATAATGTTTGCTTTATCGAGAA AATTACACTTCCAATAAGTGCCTTGTTTATGATTTTTGTAGATATTTTATCGAACGAAATCAAAATTCTT AAAAGTGAAATTGACCTCATGGTCCTAAAAGTAAAATTGAAATCATTAGAAATATATATTTGTTCTCTTA TACGTAAATATGTATGTTGCATTGTATACATTTGAGATGATAGTATGGCTAAAAGTGGTATTCATGGAAC TTTTTAGAGTAACTGATTGTTTGATGGTAAACCGATTTTAAGATGAAATAATATTTGGTCCTGCATCGCT CATTTTAAGGTTATGTATATGCACTGTTGATAAATGTATGTTTCTTTTTTTATTACTAAATGTATTTGAA CGCTCAAAGATACCTTAATTTCTGTAATGAATATCGTGATGTTTGAGAGTGTGACCGTAAGCTAAATTAG TGTTAACATTAAAGTATTGGAAACGGTGAATGGAGATAAATATGTGAAGATTAAATGAAATAAAAAAACA TTTTAAGAGATTATTTTACCTTTTTTTGGTACAAAATATTTGTATTATAGCAAAAAGCAAGCGATGGAAT GTTGAGGGGTAGGTGTTACGCAGTAAATTGCTGGATGCGAATATCAGCAATTTTAAATGTGTTTAGTGAC ATTTCTTAACTTTTTTTTTTACTATTCTATAATTGTACACAGTCCACACCTCTCACGTTATAGTGAACAA TTTGATGCATGTTGAAATAATGTAACATAATTCCGTTATTACAAAACTTTACGTTTTTCTGGCGCCGCAA AGGGGATATCAAGGTGGAGCTTTGAATTTGAGTGGTAAGTGGTATATGTTTGGCGCTTATGTCGTAAGCG GGCTTACAGTAAAAAGACAACCCCTGGTCTTCTTTGTATTCTTGTACGATTAGTGAGTCTTTATTTTTAC AGCAATTAAAGAGGCATTGATAAAACAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds