Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030983891.1 PREDICTED: Strongylocentrotus purpuratus ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), transcript variant X4, mRNA ACAGTGCATGCAGTGTCTCGAATTTCGCGATGTCTTGATTTACGTAACATTTATCACACATAATTAATAA TCTTTATTGAATCATTCTTCTCCTCGCTGTTTGATCGTTGAAAACTGGAATTAATCACACCGGGTAAACT TTGCAAGTAGCTCAGTAACTGCTGAGCGAAGCTCGAGAGTGGAGCTGAATAACAACACTTCTTGGAGCTG AGAAGCTTACCAACCTCTCTGGACTCTGCCTTTGTGACCGAGAGGGGACGGGGCGAAGCGGCTGCGATTG TCGGCGCGGAAGATTGGAATTGAGACTGAGCAATGCAATGGCACCAAACACTTCATGGGTGGAATTTTGC GGTTCCGATTTATGGGACCCATCCTTACTGAATGCTTCTGTACCTGATGTGACACCGTGTTTCCAAGAAA CAGTGTTGTCATGGATACCATCAGCTTTTCTTGTTCTTATCACTCCTTTCTATCTCCTCTTCATGAAACA CAATGACAGAGGATTCATTCCTATATCTAAACTGCACAAGGCTAAATTGAGTCTTGGGTTGCTGCTCATT CTGCTACCAGTATTAGATGTGTGCAAAGGGATATCAGATATGATGCAGACTGATGGAGACTTGCCAGCCG TATACATAGTCACTCCAGCAGTATTAGCAATAACTATGGTTGTAGCCTTGATCCTCATCCATGTAGAGAG AATGAAAGGACAGCAATCCTCTGGTGTGCTCTTTATATTCTATCTTATCAGTATTCTATGTGCAGTAGCA GAGTTTCATTCAAAGGCTATCAATGCCAAGGATCAAGGCTCCGAGGATGCATTCCGCTATGTGACCTTTT ACCTTTACTTCTTCCTTCTGATTGGTCAGTTAGTGTTAGTCACCTTTGCAGATCAGATGCCATATGACTC GCCAGATATTGCCGAAACTAATCCTTGCCCCGAAGCTAGAGCCTCTTTCTTGTCTGTCATCACATTCTGG TGGTTTACAAGCATGGTGATCAAGGGATATAAGAAGAGTCTAGAGAAAGCTGATCTGTGGTCTCTACTCA CCAGAGATAAAGCTTCTAGAGTCGTCCCAGAATTTGAAAGTAGCTGGTTAAAAGAAGTGCATAGGGTGAA TCAATCCAAGCACAGCGCGTACTCTCAAGCCTCGCTGAATCGTCATGGTGATGGAGGTCAGAAGTATGCT ATGACAGAACTCGATCCAGAAGGGAAATCCCCTAATGGTACCAACACCAAGGTCTACCGCCCACCCACTG ATCCATCATCTAAAGGCAATATTGATGGTTACACTCAGGCCTTAGCCGTACCACAGGTGGAGTTTATAGA TAGTAGCAGTAAAGCATCGTTGTTTAGAGCTGTCGCTATGAGGTACGGAGAGAAGTTCTTGGTTGCTGTT TTGCTCAAGTTCATCCATGATTGCTTACTCTTTGTCAACCCACAGATACTCAGATTACTGATCAACTTCA CAGAAGACCATACTATTTGGCAATGGAGGGGTTTCTTCTATGCAGGAGTTATGCTCATGATATCAATGTT CAACTCTACTCTATTACATCAGTACTTTCATCGTTGTTTCATCGTTGGTATGCATCTCAGATCAGCTATC ATTGGTGTGGTCTATAGAAAGTCCTTACAGCTCTCCAGTGCAGCAAGGAAAGGAGCTACCGTTGGTGAGA TAGTCAACCTGATGTCAGTTGATGCTCAGCGTTTCATGGATCTATGTACCTATCTCAACATGTTATGGTC AGGTCCATTTCAGATCTCAGTAGCCCTTTACTTCCTATGGCAGACGTTAGGACCGTCAGTCTTGGCTGGG TTAGGTGTCATGATTCTACTCATACCACTCAATGCATTGGTAGCTACGCAAGCAAGAAAACTACAAGTGA AACAGATGCAATACAAGGATGCTAGAATCAAACTGATGAGTGAGGTGCTGAGTGGCATCAAGGTGCTGAA GCTGTATGCATGGGAGGAGTCTTTCCAATCTAAGATTCTTGCTATCAGAGACAAGGAACTGAAAGTCTTA CGTCTAGCTGCTTACCTCAATGCCTTCACCTCATTCACATGGACCTGCGCACCTGTCCTAGTTTCTGTGA CGACATTTGCAGTGTATGTGATATCAGATGAGAACAACATTCTTGATGCAGAGAAAGCTTTTGTTTCAAT CGCTCTCTTTAATATCCTGCGATTCCCACTCAGTATCATGCCAAATCTTATCTCAAATATGGTACAGACC AGTGTATCACTGAAGCGTTTGGAGAAGTTCTTGAAGAATGAACAGCTAGACCCTCAGAATGTAGACCATT TCAACATGCCAGGTCACTCAATAACTGTAGATAGTGGACATTTCACTTGGGATAGAGAGGAGAAAACAAC TCTTACAAACATCAATCTGGACATCAAGCAAGGATCTCTAGTAGCGGTTGTAGGACAGGTTGGATGCGGG AAGTCATCACTTCTATCTGCGTTGCTAGGAGAGATGGAGAAAGTAGATGGGAAAGTCTTTGTGCAGGGTT CCGTTGCCTATGTTCCTCAGCAAGCTTGGATACAGAATGCAACACTGAGATCAAACATTGTTTTCAGTGG AGATCTTCATGTAACTAAATACAAGCATGTGATACAGTCCTGTGCCTTGGCTCGTGATCTAGTAGTGCTA CCAGGTGGAGACATGACAGAGATTGGTGAAAAGGGTATCAACCTGAGTGGTGGTCAGAAGCAGAGGGTCA GTCTGGCCAGAGCTGTGTATGCTAACACTGATCTGTACCTGCTGGATGATCCATTGAGTGCGGTGGATGC TCATGTAGCGAAGCATATCTTTGGACATGTCATAGGACCTCAAGGTCTTCTCAAGAACAAGACTCGTATC CTGGTAACCCATGGGATCAGCTTCCTACCTCAGGTTGATCAGATCATTGTAATGATAGACGGCTCTGTCT CTGAGGTAGGCTCCTATCAGGATCTATTGGATCAGAACGGTGCGTTTGCAGAGTTTCTTCGGAATTACAG CCAAGATGCAGACGAGAAGGAGGATGAAGACGAGGAAGAGGAGGAGGAGGAAGAAGATATACCAGTCAAT ATATCACTAGAAGATCTAACAGAAGACAGAGAGCCAACCAGAAACCTAGAACCACTCAGAGGAAAAGCTA GGAAACTAAGTAAAGGCATAGAGGCTATATCACAGTATGATATCTTCAACACACCAAGTAAGAAGACAGA CCATGTAATGAAGACAGACGCCTATGATGAGGTCGTGATGGGTGATACAGAGGAGAAGATCATACAAGCA GAGAAGGCAAAGCTAGGCAATGTCAAGTTGACAGTCTTCTGGGCCTACATCCGTTCCATCGGTGTATTTC TCTCCACTGTCATTGTCGCCCTCTACATGCTCTTCAACATCACCTCCGTAGCAGGTAACCTATGGCTAAG CCGCTGGAGTAATGAGCCCTTGGTTAACGGAACACAACCAGACTCTGTGAGGGATAGATATCTCACTGTC TACGCATTGCTCGGACTCACACAGGGAGTCTTCCTGTATGCTAGTTACATCCTCTTCTACAAGGCAGGGG TGAGAGCGTCTGGTCATTTTCATCAGATCCTTCTCAAGAGAGTCCTGCGCTTGCCTGCATCGTTCTTTGA CACCACCTTGAAGGGTTCCTTCATCAACTTCTTTGGCATTGAAATGGATGGGATTGACATTACCGTTCCC CACCGGTTTCGATCTGTTCTTAATTGTTATCTCAGGGGGATGACTGCTCTACTGCTTGTCTCCTATGCCA CGCCTTTATTCCTTGTGATGATCTTACCCATAGCAGTAGTTTTCTTCACTGTACAGCGGTTCTACATCTG TACGTCCCGTCAGCTGAAGAGACTTGAGTCAGTGTCACGCTCACCCATCTATTCACACTTCTCTGAGACG ATCGTTGGTACAAGCACCATCAGAGCATATCAATGTCAGCAAGACTTCATCAAACACAATGAGCAGCTGA TTGATAACAATCATATCACATACTACCCTAATATCATCTCAAACAGATGGCTTGCCTTGAGACTAGAGTG TGTTGGGAACTGCATCGTATTCTTTGCGGCTCTCTTTGCAGTGATTGGTCGATCCAATCTTAGCTCAGGC ATCGTAGGATTGTCCATCAGCTATGCCCTGCAGATCACCCAGACATTGAATTGGATGGTGCGAATGACCA GTGAGCTAGAAACCAATATTGTTTCTGTGGAGAGAGTCAAGGAATATTCTGAAGCACCGACAGAGGCAGC TGCTATAGTAGCAGACAACAGACCTGCAGAGTCATGGCCTGATGAAGGCAAAGTAGAGTTTATCAACTAC AGTACTCGTTATAGAGAAGGGCTTGACCTTGTCATCAAAGGAATCAATTTTACTGTCAAGCCTGGTGAGA AGGTTGGTGTTGTTGGAAGGACAGGAGCAGGGAAATCTTCTCTGACCATGGCTCTCTTCAGAATCATTGA ACCTGCTGAGGGTCACATTGAGATTGATGGTGTGGACATCTCATTGATTGGTCTCAAAGATCTAAGGTCT AAGATCACCATTATACCTCAGGATCCTGTCCTGTTTGCTGGACCTCTACGTATGAATCTGGATCCATTTG AGAGCTATACTGATGATGAGGTCTGGCTAGCTCTTAGACTGTCTCATCTAGCAACGTTCATCTCTAGTCT TCCTGAGGGATTGCAGTATGAGTGTGCAGAGGGAGGAGAAAACCTCAGTGTTGGTCAGCGGCAGCTGATC TGCCTTGCGAGGGCGCTGTTGAGGAAGAGCAAGATCTTGGTCTTAGACGAAGCGACTGCAGCAGTGGATC TAGAGACGGATGATCTCATCCAGACTACAATACGAACAGAGTTCGCAGAATGTACAGTCATCACAATAGC ACATAGGATCAACACTATCATGGATAGTACCAGAATCTTAGTGATGGATGGAGGAGAGATAGCAGAGTTT GACACACCCACCGAGCTACTTACCAGTGGAGGGATCTTCTACACTATGGCCAAAGATGCAGGACTTACCT CATAGTACATCTAGTGTGAAGTCTACCCCTTTGACTCCCATCAACTTTTTACATGACTGAGTTGGTATGT GAAGAGTTCTTTAATAGGGAATATTGTGTGTATGAAATGGCTAGAATTTGTGAAAGAGGTTTAATTAATA TATGGTCTAAATCATAATTTAAACATCGTCCGTGGACTGCAGTAAACGTAAAGAAGTGTTTATCAGCAAA TGGATTGCTTGCCCTTTAGATGTAAGATCATATAGGTTCTATGCTTATGGCGTTTTAAACCATGGCTTAC AATTAACCTCTTTTGTGAATTTAAGTTAGTGTGTCAACAGTGACACTGTATTTATCTTTAAAACAGTCAT GAAAACACCATACTGAGAAAAAGCAAAATCTTGTGCAAGCTTACAGTGACATAATCTCTCCATTAACATT ATATTACCTCAATGTGTTGGGTAGATTCTACTTTATTTGCAGGTTAAAACCATTTTGTGTGAACTGGTCG TCGGGAGTGATTACTTCATTTAATACCAATGAGAGTTTTATTGACATGTTCACTTTTTAAAACAATGCCT GTATGGAATGATCCTTTAGAAAATGAGTTTTCTTGTGTGTGCAATCTTTGGGCACGTGTACATATTTGTA AGAGGTAACGTAGTGAATCTCTTCTTACAACTCGATCTATTTGCAGTGCTTGCCTGAGGAAATTGAAATT GTATAATATTGATGTTTTGTATTTTCTTCATGATGCCTTTATTGTACATGTACCTCCTCCATCATCTACC AAAGATATTATACAGCAAGTTATTATGATGGTTTAACTTTGATGAATAAGTTTTTAAATGCCAATCAAAC CTTTGTTGATTTTGATAAGAGCAAATGAATATGAGAAACAGACTGGTGAAAGTTTTTTTTTTAATGGGTA AGTTATGAAAGTTATGAATGATTGTGAGTTGAGATCTATATGAATATCAAACTGGTATTATGACTATAGG GATATAGTGTCATGTAAGATTGTTCTTGCATTCGTTCATCCATTGAGATGTTGTAATTTCTATTACCTCC TAGATAAAACTTTCCACCAATTGTACTCAGAATTTAATTGAGAACATGATGTTTAATGAACCTCTATTAG TCTAGAAAGAGAAAGAGAAAAAGTGATGTTTTGGCCTTTCACTGTAGCATTCTGACATTTCACTTCATTC AGAATACAATTATCAGCAAATCAAGAATTCTGTCTAAACATTAATTTTAAATTGTTGAATTTTCACCAAT CTGTTTCTCTGATTTTTATGCTTAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds