Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041619079.1 PREDICTED: Lytechinus variegatus serine-rich adhesin for platelets-like (LOC121423662), transcript variant X1, mRNA GCGTTGAATGGACTCAATTTACATTGGATCGGCTTTGTGGAATCACTTTGTACTCCGTCCTTTGTCCGAG AGGGATGGCTTCGCCACACATTGGACGCCAGTGCTAGTTGATTCCACACCACCACCACTACCATCGGCAT CGCTCCACTGCTCCAGCGGGCTGAGGATAGGGGGATGAGGGTCCCTCTTTCAGAGCATGGTGTAATACTA GGAATGCTTATCTCAAGGTCTTCATGTTCACTCTCAGGATATCTTATATTGAAGGAATATTTTACCCAAC TCTTTCATGAGCCACTGGAACTCCTGTAACTGCTTCATCATTTTCGATTTATCTTCCCGCTCATCATCAT CAGGTTGTCTGGCGGAAAAAAGATGAGTATGCCGAGAGTAGACGCTGACTGGCCCATCACCAGTGTATAG AGAGAGACAAGCCGGTATCACTCCATTTAGATCTAGCTCCACCCGGAGACGGTTACCATGGCGCAGGCAA TGATGCGGGGGATGGCCGACGGTGGACCGAGGGAGGGGTACACCATTGAGAACTACTATGCCCAGGCTCC AGGTCACCATCGCTCTCGTATACCAGTCCGTTATGGCTATGCCAACACCAACTCCAGCAATAGCAACAGT CTTGAGGTGAATGGAACCTCGGATGTTGATCTGTCTCAAGTCCAGCGGTGTGAATGCTGTCCGTACGGCT ACCACATTGATCTTGACTTTGTCAACTTCTGCGAAGACATCTCTTCTGGTGCCAACTTGAAGAAGATCAA GAAGACAAAGCGATCCCGGTCACGCAATGCAGTGAAAAGCATTCGCCCCCCACCACCGCTCATTCCACCG CGGAGTAGCTCCCTGCCCCCCAAGAGGCCCAAGAAATCGAAGGAGAAGTTAGAACCAGATAAGATCCTTG AAAAGGAAAATGCAGCATTTTGGAAGATTTACCAGCAGTTTGCAAAGCTGTTGCGGAAAGAGTCCAAGTT TGAGGATTTGAACCTGCCAGCAGTGGAAGCAAGTTTTCTGGATACCCAGAGTTTGCCACCCGAGGGTTAT GACCAAAGCTTGAGTGATCTTGAGACGGAGAGTGTCACATCGCTCCCTCAGGGGTATCCTCCTGAGATGG AGCGCAGGAGTAGTCTTCCAAGCTATCAGGTTCTTCAGGATGCTCTCAATAACAAGATGGACATCTACAA TAGCAACGTCAATGGTCCTCTTTCTATCTCCAACCTGATTTCCATGTCCCATCAGAGTGGCTCCACCAGT TCTCTCTCCTCTACGGGAAGTTCAAGTGCTTTCTCCCCCATTCCCAATGGAGGTTCTTACACAGATATTG ACTACATGAAGCGGCCGTTGAGTAGCGCTTCCAGTATAGGGGAACTGTCCACTGCATCAGGGCGATCCAC GCCGTCATCTATCAGCACAAATGCATTGTCAGCTGTTAGACAGCAGATGGCTACAGCTCTGTTACGCCTA AAGCAGCTTGAAGAACAGGTCAAGGCTATCCCAGTCCTCCAGGTCAAGATCTCTGTCTTAAAGGAAGAAA AACGGTTACTTATGTTGCAGCTGAAATCAAAGAGCAAGGAGAGGCACCTTCGACATGTTGGTGTCTGTGA TGGCGTCGTTGAGGTCGATGGGGTGATAACAATCAATGGAGATTCGTCCACCCCATATTATGAGCTTCCC AATATTGACATGGTTCCTACAAGTGTAAGGTCACCTAAACCCACTCGCCCCTTCAGTCCTGGTAGCCCAG GTAGATCACCCTCTCCAAGGTTTGGCTTCCATGGTGGAAGGGCTAGTAGCCCTGGACCAGCATCCCCTGG GGTGACACGTCGCACCAGTAGCCCTGGTCCTCTAAGCCCTACACCATCTTCCCCTCAACATAGACTCATG TCCCCTTTGAAATCACCACAGCACAGAACGCAGGGACCTCCCACATCCCCCAAGCCGTCAATTCCAAAAG GGAAACCCAACCCACCCCCTGTCCCACCAAAGAAAGCCTATGTAACACCTGTTCCAAGGGCCAAGGCAGA AACTAGATCAGTGGGTGTGGATGCTAACATGATCACCGCATTGAAATCTCCTGAGACAAAATCCATTGGG ATCAACGTGGATTTAATTTCAGAAGTGGAGAAACCAAACACTGCAAAGGTCATTGAGAGGAAAAGCAAGA TGCAGCCGGTGAAATTGTCAAGCGTTCATTTACGCACTGTTCGCAGCCTGTCAGCCTGGGATAATAAACG GAGCGTGAATGGCTTAGGGGGCAGTGCCGATCCTAAGAAGGCTGGGAGCGAGGGAAATGGTTCATCAGCT GATGGAGAGGCAGGGGGGAAGGGGGTAATCAGGGAGGGTCTGATTACACCAATCAGGGTTAATAATGTCT CCTCCTCCTCACCTGGTTCTAACGCTGACTCAACCAGTGAACACCCAACTTCAACATTAACCAGCTTCAC AACCTTGTTACCTCAATCACCCTCCACAGCTAACACATTGCAGCAGGACTGCAATGAAAGACTTATTTCT CCCGCCACTCTAAATACACAAACCTACACAGCACCCCCTTCGCACCATCTAGCCACTGCCAAGAATGTTT GTGAACGTGGCACGGTGACGGACAATATCCAAACCAGGATTATGGGAACTAACACCAAACCACCTGTTTC AGCCAAGCGTTCGGATGCGAACATCGGTACCGACCTGCAAGGCAGCTCAACATCGAAGACTGATGCGTCA GTTACTGCAAGGATACAACCAAGCAATATGCAATCTACTGAAACGGAAGTGATCGAGATGGTGGAGTTTG GAGCCAATACGTCGGTCAAATGTGAGGAAAGCGGAGTCAATACGGTCAACATCTTGACCGAAGAGAGGGG GACGTGTCCTGGACTGTCTTTTGACAATGTCCGGTATTTTAAATCGGTTGTGGGTATAGACTCTGGGTTC AGTACTGCTGAGAAAGGTGTGGAAGCTCTCCCTGAAAGAAGCCCATGCCAAGATTCCTTTACCAGTACTG AAATCACAGAGGCTAAGGATAGTGATACGAACACTGAAAATGTTAAACTTGTGACAAGCTCATGCAATAC AGAGAGGCAAGCTGAATATGTGGATAGTTGCGTTGGGGACGATATTGACTTAAATGACATTATCTGCTGC CGGAAAGTAGATACACACACCATCGGTACTAATACTAGCCAAATGTTGGAGTCGAGGTCACGGACAGTCG GTGTAGGATTGTGCTCGGTGGCTGATAGCTATTGCGTGAAGTGTGATAATATCCAGACAAGAACAATAGG AATCGGGGGAGGGAGAGTATCTGAGAGTACCACAAGAACACGTACAATAGGGACAAATCACAGCGTGCTC TCAAAGACAATCGGCGTTGGATCCGACATCGTTTGTGATCCTAAATCACTGCTTGGTTCTGTCAATGTGG CAGTGGGAGACCGTGATGTGAATGATGCAATGTGTAATCTTTGTGATAAAAAACAGCAAAGGACAATCGG CTTGGGGATAAGGATACCCACCCGTGATGCTGCCATCGGAGACGGACCCGTCCTTGACCAAAGGAACATT GGTATTGGACTCTGCACTGTCATGGATAGAATCTGTGACAGGTGTGACAACCTGAAAACTGTTTCTGTTG GTATCGGTAGTTCCGATGTCAACCGATACACACATTCGCGTTCCATCCAAGTTGATGAGGTTTCTCCAGA CTCTGCAATAGTGGCTCCTCTGTGCTCAAGCCCAACCAAGTTCGGGCTTACCACGTTTGCGAGGCTCTAC AGCGATGAGAATGACTCTGTATTCTTGACGGAAACATCGTCGGATGTTGCGACTGTGGAATCTAGTGTTG AGGATGTTGATGATGCTCCTCCAACGACAACCTTTGCGGAGATGATGGATGAGGAGATAAAACCAGCTGA CTTCCAACAACTTCACCATGCTTTTACACCGGTGTTTTCTAAACCTACACAAATGCAAGAATCTGAAGAT CTTCCAAGAAACATGGCACCCCATCGTGAGAATGGATCCTCCCAACCCGACGGCACTGTCTCCACTGGAT CACTTGACTATGAGATTCATGTTACCATGGATGAGCAAAGCATGCTGGGAAATGGATTCAGTAATCCCCA CGCTATACTAGCCGATGAGAGTCCAGGTGCTATTGCTCCCAAGACTACTCTGGCAGCTACCATTATGAAG AGGGGGAGTCAAGACTCTGGAACGGAGGGACATCTGAGTGAGACAGAGCACCCAGAATTGAAGGTTTTAA ACAGCTCAGCAATGAGCTCCAGTAGCTCCAGCAGCGACTCCTCCGAGACAGATTCCGACAGCTCCAACAC CACCAGCTCCACCACCTCCAGTGAGGACCTCGGCTCCTTGCCTGGATCCCCTCCAAAGAGCTCCTCGACC AGGAGCAGCAGGAGCAGTGGGAAGAGGAAGGGAAAGAAGGAGGTGGAGGGACAGAAGGAGAGCGATGGAG TGAAGAAGAACGGGGCGACGGAGACGATGGTTGGAGAGGAGACGAGGCTTGCTTGCATCTCGTTGGGGAA ACTGATGCTGAAACCAGGAGACGGTCACACCAAGGAGCTGACATCTTGCATGGCGACGGTCGCCAAGGAC TGGTTCCGCATCACAAGCCAGAAGTCATCTGACCCACAGCAGGTCAAGGGTTTCCTAGAGGTCATCGCAA AGGATGCTGGGAAGGCGGTCCTGGAGAGAATTGTCAACATTGCTGACAGCAATGGTAACACGGCTCTCCA TTACTCGGTCTCCCACGGCAACTTCGACATCGTCCTCCTCCTCCTCGACACTGAGGTGTGTCAGACAGAC AAGCCCAACAGGGCGGGGTATACCACCATCATGCTGGCTTCCTTGGTTCCTATCCAGAATGAGAAACATG CCAATGTGGTCTCCAGGCTCTTCAGAGAAGGCGATGTCAATCAGCGGGCTAGCCAGGCTGGGCAAACTGC TCTGATGTTAGCGGTCAGTAAAGGTAGACTGGACATGGTCAAGCTTCTATTGACCTCCGGTAGTGATGTC AATACACAAGATGAGGATGGTTCTACAGCTTTGATGTGTGCCAGTGAACATGGTCATCTTGATATTGTTA AAGTTCTACTCGCACATCCACAATGTGACACACACCTAGAAGATAATGATGGAAGCAATGCCTTTTCTAT CGCTATGGAGGCTGGGCATAAAGATATTGGTGTCTTACTTTATGCTCATATGAATTTCGGCAAGCAATCC AGCTCATCGAAAAAGAAATCGCCTGGACCTTCAAGCCCTCAGCGCCACATGTCATCAAGTGCTATGAATC ACCCTCGCAGTCATTCCATCAGCTTATCACAAGGTCCTTCAAGAAGCACATCTTCCTCCAGTATTTCAAG TCTACCAGCACAAACTACCACCAGTCATCAAGAAACCTCCTCCACCATGACCAAGAGAGGGCGCTCCATG TTAAACCTCAACACGGTCGCCAGCTCCTCAAGTCCGGCAAGCGGGGGCGCGAATGGGTCGAGTGCCGCTA CGACGAGCCGATCGCAGACCACCTCACCTACTACCGAAGACCTTCCACCCGCGCAGCTCTTCCGAAGTCG ATCGCTGAGCCCATCGTCCCGCACCCCATCGTTCAAAGCACTCCAACTCCCGAAGGGACCTAACACGGGC CACTCGAGTCGCATTCCTACCCCACCAAGTGGATCGCCGAAGCGTGTCGCTGCAATCCTTGCAGCCCAGC GGTCGTCGTCCGCACACTCCGCTCACCGCAACTGTGGCTCGCCTGCCAATGGTGGGGAGAGTCCGGCTGC CCAGCGCAGGACGTCTCCCACCAAGAAGACGTATGGTGCACAAGGTAAAGCCAACAGCACAGGTTCTAGC AGTGCAAGAAGTAGCCCAAGACAAACTCCATTACAGAAGAAAGGCATCAAACCGGCCAGTAAATATTCAA CTGTCTGAGAACGAAAATTAATGATTATTGACTTTCGTGCAACATGGAGAATTGATAATGATGATAATAC TACAACAAATAGGGGTTTGGAAATGGTTTGGATACTGTACATAAGTCTGTTTTAAAGCATTATTTGTAAT GTCAACTGCAATACTCTTCTAATAAAATGAGTATTCTTGAACTGCTTGTCCAGAACATTAGAGCAGCATT CTAATACATGAAAACCTCTGGTGCTATCTCTCTTTATAATAATGACTATTTTAAAAAGATGATACTATGG TAAAGAATCTTCAAAACTAAGGTGCTATAACTCTCTTGAACAAAGAATTTCCATGAAAAATTGCTATGCA AGATGTATTTAAACAAAATAATTTTTCAACAAAAAATAATTCAAGATTTCAAGAATTTGTGAAGAAAGTA CATGTAGATGATAAATAAAATTGATTTTTCCCCATTAAAATGAGTTGAAGATGCTGAAGCAAGATTAAAA GAAGGCATATCAGTAAAAAAAACAAGAATTTATTGGATACTGCAATGATCTTGAAGGGGGAAAATGAAAT CAGAACAAGATTTAAAGTATCAATCAAGAAATTGAAATATAGATTGGATCATATCTTGTAATTAAAGTAA ATGGAGCAAAAGTCAAATACTGTCTTGAAAAAAAAGAAGAAAAGGCAGAAGTATAAAAGCAAGATTCAAA GTATCAATCAAGAAATTGAAACATAGATTGGATACTATCTTGTAATTAAAGTAAATGGAGCAAAATTCAA TACTGTCTTGAAAAAAAAGAAGAAAAAAGACAGAAGTATAAAAGCAAGATTCAAAGTATCAATCAAGAAA TTGAAACATAGATTGGATACTATCTTGTAATTAAAATAAATGGAGCAAGATTCAAATACTGTCTTTAAAA AAAGAAGAAAAGGCAGAAGTATAAAAGCAAGATTCAAAGTATCAATCAAGAAATTGAAACATAGATTGGA TACTATCTTGTAATTAAAGTAAATGGAGCAAGATTCAAATACTGTCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds