Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997529.1 PREDICTED: Strongylocentrotus purpuratus kinesin-associated protein 3 (LOC105436387), transcript variant X1, mRNA TCGTTCGCCAGCAGTGAATCTGAAATACTGAAAATATAACACTGACAATTTGTGTTGCATCGTGGCGCCA ATAAAATGTGAACACATCATTTTCGGAAAACATCATATTATATCCCGTGTTATAAACAACGCGATCTCGC CTATAAATGTCAAACTATAAGCTTGAAATGATCAGAAGTGACAATTGGCCAGTTGGTCATACGATTCTTT AAATTCGGAGGATTTGTTTGTGCAGGCGACTCTGTGATTCGTCGGGATTTGAAGCAGACTACACATAGAG CACTTCTTGGAGACGATACAGACCTGCGTTGCACTTTACCGCCAATGAACATTATTGTCAATTTTCTCCT ACATGGCGTTCGCACCGTCTCTGGAAAGAAGTGAAAGTGGGCACAGTGAAGAAGGAATTACCGGAAAGGA TTTGGATAGAGATGGATCACGTATTTTTACTGTCAGGAAGGTGAAAGGAGGGAGCATCGATGTTCACCCT ACGGAGAAGGCCCTTGTTGTCAACTATGAGCTGGAGGCGACCATCTTGGGTGAGATGGGAGACCCCATGC TCGGGGAGAGAAAAGAATGCCAAAAGATTATTCGTTTAAGAAGTTTGAACTCCACCACAGATATTGCAGC TCTGGCGAGAGAAGTCGTTGAGAAATGCAAGCTCATCCACCCATCTAAACTGCCAGAAGTAGAACAACTC TTATATTACCTTCAGAATAGAAAGGAAACGACACAAAAAGCTGGTGCTAAGAAGGGAGAACTAACAGGCA AACTCAAGGATCCCCCACCATACGAAGGGACGGAGTTGAACGAGGTTGCAAACATCAATGACATAGAGGA TTACATCGAGCTGCTGTATGAAGACAACCCTGAAAAGGTCAGAGGCACGGCTCTTATTCTACAGCTGGCA AGAAATCCAGACAACTTAGAAGAACTACAATCAAATGAAACTGTGCTTGGAGCGCTGGCCCGGGTCCTGC GTGAAGAATGGAAACACAGTGTTGAGCTGGCCACCAACATCGTCTACATCTTCTTCTGCTTCTCCAGCTT TAGTCAGTTCCACAGCATCGTAGCGCACTTCAAGATTGGTGCCCTCGTCATGGGCGTGGTCGAGCACGAG CTCAAGAAACACCTGTCGTGGAACGAGGAACTTCTCAAAAAGAAGAAGACTGCTGAAGAAAACCCAGCCA GTAAGAGAGACTTTGAAAAGAGCACCAAGAAATATCATGGTCTCCTAAAGAAACAAGAACAACTCCTAAG AGTATCCTTCTACCTGCTCCTCAACCTATCGGAGGACCCTAAGGTGGAGCTAAAGATGAAGAATAAGAAC ATCATCCGCCTCCTCATCAAGACGTTAGAGAGGGACAACGCTGAGCTTCTCATCCTCGTCGTCTCTTTCC TCAAGAAACTCGGCATTTATGTAGAGAACAAGAACGAAATGGCTGAACAACAGATCATAGAGAGGTTGGC AAAGCTGGTACCTTGTGACCATGAGGATCTTCTGAACATCACATTAAGATTACTGCTCAACCTTTCCTTT GATACTGATCTGAGAGGGAAGATGATTAAACTGGGCATGCTTCCAAAGTTTGTTGAACTTCTAGCCAATG ACAATCATAGATTGGTGGTTCTATGTGTGCTGTACCATGTAAGCCAAGATGACAAGGCCAAGTCAATGTT CACATATACAGATTGTATACCCATGATAATGAAGATGATGCTTGAATCACCCACCGAAAGACTAGAGATT GAGCTCGTAGCCCTTGGCATCAACCTGGCATGTAACAAACATAACGCACAGCTCATCTGTGAGGGCAATG GGCTTAGGTTACTCATGAGGAGAGCCCTCAAGTTTAGGGACCCCTTGCTGCTTAAGATGATCAGGAATAT ATCACAGCATGATGGGCCATCAAAAGCACAGTTTATTGAATACATCTCTGACGTTGCTCGTATCATCAAG GAGTCTAATGATGAGGAGTTGGTGGTTGAAGCATTGGGTATCATGGCTAATCTAACCATCCCAGACCTAG ACTATGAGATGATCATCAATGAGTTTGGTCTTGTGCCATGGATCAAAGAGAAATTAGAACCAGGAGCTGC TGAAGATGATCTAGTACTAGAAGTGGTGATGTTGGTGGGTACCGTGGCAACGGATGACTCCTGTGCTGCG ATGCTGGCCAAGTCTGGCATTATTCAATCTCTCATAGAGCTACTCAATGCAAAGCAAGAGGATGATGAGA TTGTTTGTCAGATCGTCTATGTCTTCTATCAGATGGTGTTCCATGAAGCAACGAGGGAAGTCATCATCAA ACTAACACAGGCCCCAGCATACCTGATAGATCTCATGCACGATAAGAATTCAGAGATCAGGAAGGTCTGC GATAACACCCTGGATATCATATCGGAATTTGATGAAGAGTGGGCCAGGAAGATCAAGCTGGAGAAGTTCC GATGGCACAACTCCCAATGGCTGGAGATGGTGGAGTCACAGCAGATAGACGATGGTGAAGGAGGACTCAT GTACGGAGATGAGAGTTACAGTCCCTACATCCAGGAGTCAGATATCCTTGATAGACCAGACCTATTCTAT GGACAAACAGGGTATGAGGATGGAGAGATGTACGATGGCCAGGTGACACCTGAGTACGTTGATGAATACG GCAATGTACAGAACGGGGAGTACCTGGGAAGACCAGCTTCTGCTATGTATGGCAACAGGTATCAATCAGA GTATGAATCCCTCAGGCCCGGGTCAAGGGTCGCATATCTGACGGAAGATGGGCAACCTTTAGATGAATAC GGCAACCCCATCGAGGTCTATGCTGAATCAGTAGACCAGTACGGCCGTCCTGTCACTCCGACGTACCAGT ATGGCTCACAGGCACAGCAAGGCCCAGGTTACCCGTACTGATCAATATCGACTCTTATCTAATCATTGAC ACATAGCAAATGGACAGGATACTTGCTACTGAAGGGTGTACCAATATGGCTGCTAGTGGGTGTACCAACA TGGCAGCACAGTTTCTCTATACTGTAGTGAAGGATTTCTACTGTGATCTCTGGAATTGGACAGAATTTTC CTTTTACCAAAGGGCTTCTCCCCTTGGTGTACCAATGTGGCTGCACAGTGTCCAGAGACTCTGCTGTAGT GATCAACTGCTACTGTGATATTTGAATTTGGACAGAACTATCTGCTCTTGATGGGCTTACCAATATGGCT ACCAATTGGTGTACCAACATGGCTGGACATCTCCTACTAATACTATCCGTTGCAGTGATTGACACCTGTG ATCCTTGAAATTGGAACAGACTACCTGCTCCCATAGTGCTTGCACATGGTTGTACCAACATGGCTGCCTG TGGGTGTACCAACATGGCTGCTAAGTTTCTGTTGACGATGTGAACTTCTCTGCTGTGGTGATCTAAATCT GTGATCATAGGATTTGGACAGTCTGCTTATCACAAAACAATGGCTTACAGTACCCAGTAGGTTACCAATG TGGCTCTTAGTCTTAGTGGGTGTACAACATGCCTGGAGAGTAATTTCTTCAGACCATGGTAATCTATAAT ATTAATGAGATAAATCTTCAGTGATTAAAGTCTATTGAGAGTTCCAGGGATGCCAGAATTCAGGCCCTGG CAAGTTTTTTTCAGACCATAGTTTAGGCTTTTTTGTGTACAAAATACTGAGCTCATTCTAGGTGATTTTC AGGCCCTCTGATCAATTCTAACTGGCATCCCTGGAGTTCATAGAGGCAATGGTTTGGGAGGCAATTATGT TATCATTGAATGTATTCTCCCCCGCAATTTACATGTGGTTATGTCCCTATCCGTGGATTGTGGTGATTCA TATAGTTGTGAGCTTGACAGGTAATGCACTTATTACTTAAAGGGACTGATCAGCCCACCTCACAGTCTAT TAGTAATACCTGTCATATCTGTGGACAGGGTATTCTGTTCCGGTCATTTGACTACCAATAAGAGAATTGA GAATAGGAGTGAATAAAGACATTCTGAAGCTTTTTCATCTTCCACTCATCAGAGTAATTAGTAAACCACA TGAATGAACAGAAAGCTGAAGTGGACAATATAAATGGAAACTAAAGAAACAAAGAGCTGGAAAGAATAAC CAGTTCTGATTGGCTGCTCAAAAGAGAGTTAGAGTGTGAATATTGCTTCATTTATAATAATAAAGCTACC TTTGTTCAGGTGTAGTGATAGGAATAGGGATCTGCCAGGTGTAATTCCTGGGATGCTTCGAGTACTGTAG TGGTGGTTACATATTGGTCGAAGATAGGATAATAGGGACTTTTAGCACAACGACAACGTGGATTGCTACG ATCGACATCCTTTTAATGTACTGCCTTGAATGGACGTCACACGTATCACAAAATTTTTAAAATTCACTAA TGTTGGTGGAGTGCCTAGAGTGTCGCTGAAATGAGTGCCATATCAGAATCCAGTGTCATTGTTATGATTA ATATAATTAATTATTGATTTGGGGTTCAATATACTTTGTATTCAATGAATTTAATAAATATAACATTGGT GAAATTTTGGGTCAGTTAATTTTCCCAATCCCAAGCAATGTAATTACTTGATTTACTGCCAAAAAGTGAC GAAGAAAAATAATTTAATCCTTGTTGTGCGACCTTATGCAAAATCTTCAAATTGGCAATGTGAGTGAGTT CTCTACCTTTGAGTGATAGGTGCAGAACCTGTTAACACCTGCATGTATTTTTCAACTCCAACTCAATTCC ACACCTTCAAAGATGCCTTCACACGTGTCTAAGCAAACCACCTAGAAATAAGGTCCGCAATAAAAAATCA AAAAATTTTACTTGTAAATGAATGGGAGTGGAAAGAAAAAAATTAGCGGTGCTACATGTACTAACGTACA TGTATGTTGTAAGGCACAAAAATATGAATTGCACTATGCTTGTTTCGTGTCATTTTGCCACAGCTTTTTC CTTCTTGGGAGGTGGGGGGAGGGGGGTTATCATGCCAAGTGTGAATGGGGCTTATTAATAGTGTGAGAGC TTGCATTCCTAGGTAGTGCACTCTCTGACAATTCGTCACATAACGAGTACCCCCCCCTTGACAGATCCTG TCAGAGTGATCAGTAAAGCTCGGTACACCTGTATAGGAAGTGGGTATTTACTGCGGGCTTAAAGACTTAA AGGGGGAAGTCAACCCTAATACTAAGTTGGTTTTAAAAGAAGCACATAAATGTGAAGAAGCAGGTGAGTA AAGTTTGAGCAAATTCTGATTAAACTTAATTATTTAAAAATAAGAAAGTTATGAACTTTTGAAGTTGTGA TCAATTAAACACAAATTGGCAACTCTGTGACCTATCTTACGAGCTCCCGGCCAATGTGTCTCTTTAAAGA GAAGGTAGAGTCCCATGTACCTGTTTCTGTGTACTGTGGCATATGATTTTTTTCAGTGAGATCAAGTAAA TTTCTTTTTGATCATTCCAAAGCTTTGCAGTATACATCATACTTATGCACTACATATTAAACCTTTTCCA ATTGCTTTCAGAAGTTTCTTTCACAATTGCATGTCCAGAATTTTACTTTAGCTTGAACAGGTAATCACGA GTATTTGGACTTGTTACATGAAAATGACCCCAAAATGTGGTAAATGATGACTACTTTTTATTAGACTGCT TTTAAGGAAAAAAATGTGTCGTTCCAAAAGTTTATCATTACGGTATGTATATGGTTTGTTTGGAATAGCG GATTTAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds