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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030973404.1 PREDICTED: Strongylocentrotus purpuratus trichohyalin (LOC580810), mRNA TGAAAAGTTGTATCGTAAACAAGGATTTCAGAACAAGAAGTTAGGCGTGGCAAAACTACCCAAAATTGGC TATTTGCAGGAGGAAATCATCTTAATCGTGCCACTGCTGCATAAAGGAGCACTCCTTGTCATAATGAATC TTCCCCGATGACATCACAATGGCCTCATAAATAGACAGTGCCCTCTACCAGCCATGGTGGAGCTAAAGGT CTGGGTGGACGGGTTCCCGCGAGTGGTGTGCGGGATCAACGAATTCACGACCTGCCAGGAAGTAGTCGTT GCTCTGGCCCAGTCGACGGGTCAGGTCGGGCGCTTCAACCTCTTCGAGAAATCTCCAAAGACAGAGCGTA TCCTGCACCCGCAGGAGAGCCCTTACCGTGCCTTAGAGAAATGGGGTCCCATGTCCAAGAACGTCCGCTA CTACCTCCAACGGAAAGGAACAACGCCGTTTAGTCAGACGCCGCACAGCAGTAGGCCGTCCTCCGTGACG AGCCTCAACCTGTCTAGTCCTGAAGAGCGCTTCATGACCTTGGCTGATTTCAGTGTTGACGGTGATGATG ACTATTTGAGAGTGGCGGCGTATCAGGGGTCGACGAGTGGGGGCGGGAAGCATGGTGCCTTCCAAAGACT AGAGCTAGAAAGACACGCCCAGCTGAGGAAGGAGGAAGAAGAACGGAGGATGCAGGAGGAGGAGAGGAAT AGGGAGATGGAGAGAGATCAAGGTGTTGAGAAGATGAAGGAGATTGAAAGGGAGAGATTTATGGACCATA ATAGAGAGATAGGACGGCAGCATGCGTTAGCCATCGAGAAGGAACAACAAAGGAAGAGAGAGAGGTGGAA GGAGGAGGCAAAGGTGAGAGGGGTGGAGGAGGGGGTGAAGATAAGGGAAATTGAACGTTTGAAAGATGCA GAGAAACAAAGAGAACTTGAACAACAGAGGCAACAGTACCTGAGAGAGCAGGAAGAAAAGGAACGTAAGA TTCGACATTTGGAGGAGATGATGAGAGAAAAGGATAGACAGAAGGAGGATGAGAAGAAGAATGAACTTGA GAGATTGCAAGAGAGGCAAAGAGAAGAACAGAGGGCTAAGGAGGAGGAGATAGCACAATTGAAAGAAGAG GCGAAGAGGAAAGAGTTGGAACGTCAGAAGGAAGAAGAGAAGAGGAAAGAAGCAGAGAAGAAAAAAGAGG CGGAAAGAATAGCAGCCTTGGAGCGCGAGAAGGAGTGGGAGGCTGAGAGGAATAGGTTACAAAGAGAAGC AAAAGCTTTTGAAGAACAGAAGAAGATGGAAGAAGGAAAGAGGAAGGAATTGGAAAAGCAGAGAGAGGAG GATAGGCAAAGAGAAGTGCAGAAGGAAGAGGAGCGAAAGCTAGAGATAGAAAGAGTTCGGAGAGAAACTG AGATAAGGGAAGAGGAGCGTATAGCGGAGCACGAGATTGCACGTCAAATAGAAATACAGAAGCAGAGAGA TATAGCAAGAGAAAAGAGGAAAATAGAAGAGGTATTAAGGAAAAAAGAGATTGAGCATCAAAAAGCACTC CAAAGACATAAAGATGAAGAACTTAAAAGAGAAAAGTTAAGACTTCAGGAAGCGGAATGGGAGAAAGTCA GGATGGCAGAGAAGGAGAGACAGACGGTGGTACAAAGGCAGAAGGAGGAGCGCGAGAATGAACAACAAAA ACAGGAGGAGATAGAAAAGGAGAAAAAGAGACTTGAAGAAGAATTAAAGAAGAGAGAGAATGAAAGGCTC AAGGCCTTGGAGCTTGAGAAGGCTAGGTTAGCGGAGGTCGCCAGGAGAACGGAGGAAGAGCGACTGAAGG AGATCGAGAGACAGAAGGAGTTGGAGATTCTAAGGGCGGAGGAGCTGCAGAAGAAGGAGAAGGCAAGAAG GGAGCGCATCGAGATGGAGAAGGTCAAAATTTTGGAGGCCAGAAGACAGAAAGAAGTCGCCAGGAAAAAA GACGAAGATCAGAAGCGACAGAAGGAGAAGGAGAAGATCAACGAGCTGAACCAGATTGTTAGCGTGCAAC AGGAGCGGATTGAGACGCAGATATCACAACTCACCAACATCGAGGAGGCCTGTCTGTCCCTTCAGATGTT TGAGCTGGATCCGGAGTTTGACCAGATCGAGGATAAGATCATCGAGTTTGAGCAGGCGGTCAAGAAGAAC AGGAGCGCTCTCAAGGAGATGGAATTCTGGGAGAACGAGCTGGAGATCGAGCAGCAGCTGTGCGAGAGAC TCATGAAGGAGGTGAAAACGTTGAAGGCGAAGGTACACGAATGTCAGAAACAGACGGAGGTCAAACAAGC GGAGATAGAGGAGATAGATGAAAGGATACGGAATGAGGAAGAGAGGATCGAAAGAGAGGGAGATGAGCAA GCAAAACAAGATCTTCATGCTGTCCAGGTTGAACTGACGGTGTTCCAGAAGGAGCTCGAAGGCTACGCAG ACAGTCTCCAAGAAGTCAACGAGGACATCCAGGAAGTGGAGAGACTCCTAGAGAAGAAGCAAAAGGAGAT TAAGAAGCTCGACAAGGAGATTAAGGAAGAAGAAGAGAGGAAAAGACAGGAAGAAGAAAGGAAGAGAGAA GAAGAAGAGAGGTTGAGAGCAGAAGAAGAAAGGAAATTTGTTGAAGAGGAAAGGCAGAGAGCGGAAGAAG AAAATAAGAGAGTCGAAGAGGAGAGGAAGAAAAAAGAAGACCAACAGAAAAAGAGAGCGAAGGAAGAAAG GAGGAGATTGGAAGAAGAAAGGAGAGTGGAGGAAGAAAGAAAGAAAGAAGAAATGAAGAAGGCAGAAGAA GAACGGAAGAGAGCAGAGGATGAGAGGAAGGAAGAGGAGAACAAGGTAGCAGAAGAGAAGAGAAAGGAGG CGGCTCAGAAGGAGAAAGAGGATCAAGAGAAGGATGGAGAGAAGAAGAAACTTGGAGAACTCATCAAAAA TCCAACTCCTGGAAACAATCCTGCGCGTAAGATGCTCAAAAGCCCTAGAGACCTCTTCAAGCAAGCACCG AGCTCGGACAACCCTGAAGGCGTCTTCGTTTAAAGCCCCTCTGCACTACTTATAGCTACTTGCGCCCTCT ATATAGCAAACAATGCCTAATCGGTGCCTGTTGGTCCTCCATGATCCTCTTTTTCTTATGGTCATTGAGA GCTGATTTGATGAGATAACCACCTGTCAGTGACCTTGCAGGGCGGTCTAATCCCCCTGGCCAAACTAGTG CAGACTGGCTTTAAACACCCCTGCTATCAGAATGGAACAACCCACCTTTTGTACGATGCTTCCAGCTCAT TTGGCTAGATGACACCCCCATTATTAGAATGGATTGATCCGTCTGTCGTAGGTTGCCCTCAGCTCATTTG GTTAGATGGCACCCCTATTATCAGAATAGAACAACCCACCTTTTTGTAGGATGCTTCCAGCTCATCTGGC TAGATGACACGCCTATTGTTAGAATGGATTGATCCACCTGTTGCAAGATGCTTCCAGCTCATTTGGCTAG ATAACACCCCTATTATCAGAATGGATTTATCCACCTGTTGCAGGTTGCCTCCAGCCTATTGGTTAGATAG TAGTGGTGATTATTTTACCTTACTGCTAAGACGACACCCCTATTATCAGAATGGACCTTTCCTCCAGTTG GCCGGTAATCGGGTCAATATAAGGGGGGTCCATATTTTTTTGGTGTCGGGAATCATTTTTATCTAATCAG GAAAAAAGAATGTTCATTCCACACAGAAATGAGCCTTATTTATGGTATCTGTTTGTAGATGGAATGCATG TTGCCGAATGACCATGTAAACTTAAAGCAGATGCATTAAATTTCAAGAATTATATTTAAATTTTTGTATA AATAAGCTGCATATGTTATAGACCATAGGGACTGCTGAGAGCCAGAAGGGTGTTATTCTTGGATTGCTGT CCTCCAAAAGATTCTGTGATGGAATATAAATTGTCCTATCAACCCATACTGTACATATAGCAGTGCAGTA TCTCCTTTTAGAGAGGTTTTTGCATTATCTTTTGATGTACAATGCTAGGATTTACACATTATACATGAGC AGAAAAAGCAAAAATCACAGAAAAAGTTTAGTCTAAGCTGTTGACGAATACGGTAAGAATGATTTAATTG TAACTTATCATCGAAATTACTAAATTGGCAACACGTAAAATATTAAATCACTATTTTTGTGTACAAATTG GCAATTTTGCAGTTTAATATTACAATTTACATTTACATTGGTTATATTAAAATGCAAACTTTTTTTCAAA CTATGTACAGGTAGGAGTGTAAAATTAGAATAATTGTTGCCAATTTGACGAGAAAAACTGATGAATTTAG AAATCTTTGAACTGCTATGAGTTAAAACACAGAGTTATTACTCCCTTTTGCTTCTCAGTATGTAATATAT ATCTTTGTGACAAGGCTTTAGTTCTTGATGCGAAACTCAGAAGAACAAGTGAAATCTTGCCATGTTTTAT GTCAAAATGTTTAAGAAAAATGCTATATGAATGCATTTGATTATTAGACAAATGCATTGAATGAATTTGG GTTGCTTGCACATGAGGCAGTAAATTACCTTCCAAAAACTTGGCCTTTGAAAGTAATATACCGTAATAAT CCTAGATTCCTATCACTCTTTTTTCCTTCTCCTTTCTCACAGCACAAGCATGTGCTGTATAAGAGATTCA AAATTTTGCTTCGAGTGATTCCAAATTTGTATTCATGAGATTTCAGATGTTTGCAGTGTAAAATTAGTAG GTTTGGCTTGCAATAAAATATGGTTAAGCCTACATCATTACTGGTACTTCTTTGTACCATGTGTCAACAT TGCTATTGAGTAGCATCCAAGTGGTTTTATTTCACCATAAGGGCTTTTCAGTGAAGTGATTCACTGCGTC ATGTGCAAACATCACACAGCATTGAATACCTACATGTACATGTATGTATAGATAAATGTATTTATGGTGT GGTATACAATATTCATGTAAAATTTATTAGCTTAGCAGTATCGGTGCATGGGATATTATATATTATTATC TTATATTTTGGGGAAGAGGGACATAAGATTTACATGTATGTTATGAATTTCCTTGTCATTTTATTTTTAA TGATTATATTGTTTGAAGATCAAATTTAGTACTTTGACAATCGATTCAGATGTATTACAACTTTGAAAGG AGTTTGATATTCCAGGTAAAGAAAAAGCAACTGTTCATGTAAGTAGTGAGATATGTTATTTTAAGTGTGC AAAGAATTTTGAGGACTTCCAATCGATCTGGATCAATTGCGGCTATTTGATCTGGTTGGAATTAGTGCTT TATATGTGGTTCTTCAAGAGAAAAATACCGTATGATGGTTCTGACTGTTACTTAAGGCAAACCAGATTGT CCATTGCGAGTACTTAATTTCAAAGTCAGCCATTCATGACATGTACTGTAGCTGTAGGCCTATACATGAG CCATCCCATGTTTGTCAAGGAATGTTTTGATTTTGTATCACTTTATTGTCAATCTTCAATAAAGAACCAG TATAAACATAAAAGAATTGCAGTCAGAGACATATAATAAGAATATTTACTGTAATTTGTAAAACTCATGA AAACGTAATCATTGTGAAGTACATGTATAACACATATGCAGGGGATGTATTATTGATGGACCAAATTAAA TATGTACAACTGTACATGTACATATATACTTTGAACCCACCACACATTGTACAATCTCCTGCGATCCGAT TTTCAAAAAATGGCAAATCTACAGTGTATTAGATACATACTGGTAAACATTATCTTCGTAAGTTAGGTTC TAGATCATAAGAATACTAACACTTTGAATTTGATTGCATGTAAGGTTTCTAGTCAGAATAAAAGCCGAAT CAGGTTCAAATCGTAGACTATCACACGACTCATCTGGGCTCATTTCACAAAACTTGTCATGAGTGACAAA TGACAGTTTTTGTTATAAGCTACTGAAATCCTTGTTTCTGATTGGTGATCAGCAGATTTGTCACTGATTT TTGTCATTTGTCATTGAAAAAAAGGCTTTGTGAAACGGGTCCCTGATGTTATTGTGATTCTGAGCCAATT TAGGTTTTCCATCTTCAAGGAAGTTTGAAATCCATTAAATTTAGATTTCATTAATCATAAGACTATTTAG ATCCTCGATCATTCACATTTGAATCATTTGAATGTTTATATGAAATGCTA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds