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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT114850.1 TSA: Strongylocentrotus purpuratus WHL22.348985.0 mRNA sequence CTCTTGCGACCGAAGCTTCATTCTCCATTCGTGGTAATATGGTACTGTCTGCAGGGCCACAAAAGAAGTA TTTCTACGACATGTGGATGAAAGGCAAGTTTTGCGACGTCAATATAGTCGTAGAGGATCACGCTTTTTTG GCCCACCGTGTGGTACTGGCGGCAAACAGTGAATACTTCGAAAAATTCTTTCTCAACACTCCTGCTAAGA CCGATATACTGACTGTATACATATCAGATATTTCTGCAGACGTTTTCCGTGACATTCTTCGTTACATGTA CACAGGTGATGTTGACATTCAGTTCGTTCACGTTTCTCAGCTTCTAAGAGGATCACTCTTTCTTTCGATC AAAAGTCTTACGAATGCACTTCAGACGTTTCTCTTGAACACCTGGAAAGGTGAATGCATTGGTGCGTTCT GCCTGGCACAAACTACAGGTCTACATGACCTTCTCAGGGAGATTCTGAATTACATTCGGACACATTTCGT TGAGGTGTCCACGTCGAGAAACTTCGCTCTCTGTCCCGTTGAACACGCATCGTGTATCTTGAAAGACGAC AACCTACGGATAAACGAAGAGACAGATATCCTCCATGCTGTCTTGCTGTGGCTAGAGCACCACACTAGGG ACACCAGCTCGAATTTAAGGCTGCTGAGACACGTGAGATTTGAATACATACCCCTTAAAACAATCGAACG CATCGAGAAGAGCCATCTCAATTCTATTTCCAATGAATCAGTGAGGCGCTACATTCAAGATGCAAGAAAG CGGGCATCTTGTTTGGAAATAGATCAGCTCCATTTCGATCCTCCAATCATTAGGCAACGCATAGCAGAAG TGGTTGGATGCCGCGCCTCAAGAATAATTGATTCCGAGAGCATCACTGCTAAGAACAGCGATCGTTTCTA TAAGACGTCTGACGAAGAGGAACGCATCAGTTCATCGAAAGAAGAGCAGACTCCCTCTTATTCTCAAGGT GGTTTGTCATTGTCTTCGATCGAGAAATCGCCCTCTTCAACTAAATCGTCCAAATCTCTGAATACAAAAG CAGGGACATTTCCATCATACCATGACATCGATACAACCCCTATTCGCGTAAGCGTATCGCAAGATGTATC AGCATCTCCCGTTGCATCGAATGACGATCTTGGAGAAAGTAGCAGCCAGGAATCTACAGAGGATGAGACA ACCATACAGGTAGTGCGTATAGGTGGTATATCCAGAACATGGGACGAGGACAGTGTGCACAGTGATATCG AGAAGCTGGACCGCGGACGTGGCAAAAGATGGGAAGAATGGATATCGTTTGCAGACCTACCTGTTGCCAT GCACCATCAAGCAGCCTGTTATATCCACAACTCAATTTACATTTCAGGTGGTCATGTACAGTTGCCCTGT GATGCAAGCTGCAACAATTTCCAACCCAGTCGCCTCTTCCATGTGTATGATCTGATGAAAGCGAAGTGGT ATCGGCTCGCGGACCTGGATCAGGCCCGGGTTTTTCATCAGATGGTGGCGCTTTTCGGGCAGATTTATGT GATCGGTGGGCAGGGGCAAGACGGAGGAGCTTTGGCGGCAGTTGATCGGTATTCGCCATACACGGACAGT TGGCGCCAGGTAGCTCCCTTGAGTTCCCCGCGCTATGCCACGGCTGCGGCACCGTACAATTTCCACCTGT GGGTCGCCGGTGGTGCTACCAATCACGTGACCAATCGTCGTGGCCAATCATCTCAAAGTGCGGATGAAAG TAAAGAGTCCGGCGATGAAAAAGGCGCAAGCGTCTTTGATGGATTCTACAAGAGTTCCAACACACAGCTG ACTGGGATCGTCGAGTGTTATTCACCCCATGACAACAGCTGGTCAAAAATTAACGGACTGCCAACACCAA GATGTCACGCCTCTCTTCTGCGGATCAATCAACGTCTCTTTCTCGTCGGTGGTTTTACTTGCATACGCCA CTTTCCCGATGACGATAGCTCCACGTCTTCGGTAGACGTGTATGATGACGTCACAGAATCGTGGCGTTAT GTAACTGACGTCGTAGAAGGAAACTACGGCGCAAATGCCGTGGCTGTAGGACCCAAAATAGTCGTTCTCG GAAAACCTGGTCCTTTCTTGGAATCTGATGGTGACGTCATATCAATCTTCGACACGGCGACTGATAAGTG GGAATTGAGGCGGAGTCTGTTGCTAGAGTCTAGAGTTGGACATGCGTGCTGTGCCATTCCTGTATCGTTG CATTCGCCATTGCGTCGCGCTTGAAGATACGATTGCTTGATGTTCAGCAAAATAAAAAGCTTAAAATATC TGATAGTATCCTTAGACCTATCCCGAGGATGTAATATTCCACATGGCACGAAGCCAACAACAATGGCGAA ATATACGATCGAGTTTTAGAGACACAACCGTACTAGCAAACACCATTAGTCAACAAAAGATCTTTAACTA AAATATGAAATGATGCGCTGTACTTGTGCAATATGCAATTGGTTTGGTTTTATTTTTTCGTATAAAAAAT CAAAAGCATGCAAGAAAACAATTTACAGAGAAAATACAAATCAAGAATTAAAAACGGCTGGAATGCTCTA AGTTGGTCAAATTCCAAGAAATGTATCACACCCTGAAGTACTTATGACTTGCAGGCTCCATTCTGATGTG AATAAATAACAAAATAATCACTTTGACCTTGTTTATGATTTCAAATTGTGATTTATTATTTCTTCCACTC ATCGATACAAAATATACTCTGCTTTTGTAATAATAAATACCTATTGACCAATATGTGACATAATAATGTA TAATCTTAGATTTGTTCCCGACACTTCATAACAACTGCAACTATTATAAACCCACACATCAATCATAGAT CTTAAACATAAACCTTAAACATAAATTTCAAAGCATAAATATGACATTTTAATCACACTTAGGCGTGAGA GAGAGAGCAAGCAAGTTCATGTAAAATAGTGATAGAATTATTTCTTTGGAATACAATACGAATTTAGAGT CAATTCTCTACATTTAATTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGAATGCAAG CGAGTTCATATAAATTAGTATTATTTTTCTGGAATGCATTTTGGTTTAGAGTTCATTTTCTACACATATG CTGCTATTTCATGCCTGTATTTTATGTGAATGTTCTTACTGTTTCAAAAAAAAAATCATCAAGCGTCGAA TCTTAATTAGTGTGTAGGAAGTTTAAGAGTAAAACTTTCATGTTTTCATTGAGTAAAAGTAACCATAAAT ATAAATTTACTGGTACATGTACAGGATTATCAGCTCCATTTTCAAGCCAAAAAAACGTTTGCAATAATGC AGTCATGAATCGATTTAAAAAATGAGAACACATTAAACATATGCTAATAATATAATGGAATAAGGATATA CAAATAGTTACAAATGTGGTAGTACTGAAGGCAACCTCAATATATTTCAAATCTTAAGTGACAACATATT TGTATGATTCAGCCCACTTAAAAGAGATATATATATTGCTTTTTAAGATTAAGAAATAATAAGATCTGCT TTTAAAGATGTAAGATATCAACAATTTGCTTTAAAAAAAGTCATACTATACACACAAATGAAAACATGAC TAGGTTTTATAACTCTAGCGACTGAATTTTCGATTTTTGGTAAAATTAGTACATTGGTAATACCCTGGAA CCATGTTTCCTGAAAATAGCTTCACACACACTATCAATTTACAAATACATTGAAAACATACCACTAAACA ATATGAATGAGTTGAATCAACATTTTATGCCTTTTAAAATAACTTTTACAAAATATTTTCATAGATGCTA ACGGCTTTCCATAATTTTTAAGTCCAACTTAGAGATATGTCCAACTAAGGATCATTGTGAAACACCCCCC AGAATTGTATCCATTCATTTTCACACACAGATAATCAAGCTTAGCTCCTTCATTCAAAATGGAAGAATAT TGTGCAAGGGTCACGAAAGACACAACAGTTTTTTCTTATCCCATTCTCTCATCAAGAGTTGAAATGAAAA ACTACCGGTAACTGACATTTACATTGCTCAAGTCAAAATCGAAAATAATGTTTGGCAATCAAATCTACAG CATTTTGAACACTTCTTATCTTACATAGAAAAATCGTATTTGGATTAAATGAAAGGTCTGTGCAAAGTTA AAATTGATCAATTTCATGAAGGTGTTTGCAATTGTGTTTTTAATGTAATGAAAATCAAGGTTAAGATTAA TCTTGTCTACTAAAAAGCAAAATCAATTAATCAGATTTCCCTTCCTTCCTTAAAAATTGCCCCTCATTAC ACTTTGATCTTATCTTATATTATTGTTTCACAACCCATCATCAAAAATACATGTATACATCTCTTTCTAT ATAAAAAAAAGGATAATATATTCAATCGAAGAATGCAAATGTACAGTACAAAACTACAACCAGATCAATC AGTAAAGCTAAAACTCAAACAAAATATTCTTTAAGTATCAATCAACATTTCACATTTCTGACAGCTGTAT AATCAGCTTGGTAGCATACAAATGGCAAGACATATACTCTCATAATTCTCATTGGCAACAATGTTTGTCA TTAAGTAGGAGTACAAGTTTGATATGAAATTTAAAAAACATCCGAAAAGAAAACCTCAGTGTTATAGTAG AAAATGAAATGACATATATGGTTTCCTTTGATGGCACATTCTGTTTACCTTCACTTTTTACATGAAAACC TATCATTTCATTTTTCTCTAGTTTAGTTACAATTTGAGTATCGGTATTACAGACAAGTGTCCATATTTTG TCATCAGATTTAGTATTTCTATAAGACTGTACACATTTCTACAAATGTACCTTACTACATATAACCCCTG GCTTGTTCATGTTATGTAATTCCTCTTTCATTTCTTATAATTCAACTTTATTAATGTATCCCCACACCCA AAAGGAAATGATGAACAAAAAGCATTTACGTTCTCTTCTTTAAACTGGAAGTTTCTCTTTTACTGTATGC CTCATACACAAATATGTTAAATACATACAGAGCAAACTTGAATGAAATGAATATAATCAAGGTGAGGTAC CAAATAAAAATTCTAGCTTTTCATTATGGCACATTCTCAAATACTTCTGGCACATTTATTCAAGGTAAAG TACATATTTCATGAGAGATCAAGTAAAGGAAACAACATTCAAGAATTGAATGTCATGAATGGAACAAAGT ATACTCGTTTTAAAACAATATGAAAATAAATAAAACTTTACAACTCACATCTAGATCCTAATCAAATGAT TGGTCAAACGAAGTATTAAAAATGTGTCATTCATTTACTGAGACTAACAATTTTTAATTATGCAATGAGC AGCAGTGCATGTAGAGGTTAATGGGCTTATAATATTATTGTTTATGGGTTAAAGTAAGCATAATAAAATT GGGCTTTATTTTTGAACGATAATTACCCCAAAAAATTGGAAATTTATTTATTTTACATCAAATAATAAGG ATCTAGGAGTTTTGTTGTAAAGAACAAATGATGCATGTTTCATTCGTTCATTACAGGATCTATCAGCTCT AATATTAGCTCTTGTTGAGGCTGTATGTGCACCTATCTATCAAAGCCTAATGGCTTTGTGTGATGGATGC ATAAAGCCTCAACTCGAGTGCGGATAGATTTTTAAATGAACTCATTCGCATGCATCATTTTGTACAATAT CTGTAATTAAAAAATATTATATTAGTTTTCATAATCCAGGCAAGGAAATAAAGATGTATTATAGAAATAA GTCAGGTGCGTGTGAAAACAGGCTAAAACATAGGCAGGAATGTACAAGTACCAGTAAACACAGTTTCAAG GTTGAAAATGTCATTGATATACTTAAATATGCTTTGGTGCATAAAGGCTTCTGAAAGAGCGGAGTTGGTG CACAAAACCTGACTGCGTAGCATAAATGTAACTGATCTCACCATTAATAATAGCAATGTGCGACCCCAAA CCTGAAAATATGTGTAGCAGTAGCTTGCATGATTAAGTTCGCTCACACTCCATAAATCACTAGGCAGAAA GACGGGAAGATACACGTTCTTAAAACAAGTGGGGGAGGGAGTCTTTAAAAATTAAGTGATCCTACTTGTT GCTCTGCTAGTAGGTGCCTTCCAGCTAGGTAGCATGAGCAGTGCAGATAGGCCATCCAACATGGGTCTGA AA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
