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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT102341.1 TSA: Strongylocentrotus purpuratus WHL22.707314.1 mRNA sequence AGTACTTACAAGACTGTGACTCTGTAGCAGTGATGATGAATGGCCGGATCAAGGAACAAGGAAGTCACAG TGAACTCATGTCAGAGAAAGGAGAATATGCTCGACTTATCACCACACACTGCACGCAAACTCGAAGATAT ACAAGAAGGTGAAGAAGAAGACGATGAAATTACTTCCCCCAGAACCAGGAAACAAGCAGTTTTCATAAGA GAGCGAAGTAGACGAATTTCGTCACCGCCGACGTCGCCGAGGGCGAACAGTGGAAACAAAAGAAGACGGA CTATATCATCGACAAGCATAACAATGACACCAGTTACACAACGCAAAAGTAAAATATCATCAACAGCAAG TATTTCGGGTTATAATGACGCAGCTATCGCAATTACACCAACTACACAACGCAGAGGAAGGAGATCATCA ACAGCAAGTATTGGTAGTTATATTAATGACGCAACTATGGCAATGACACCAACTACACAACGCAGAAGAA AGAGATCATCAACATCAAGTATTTCGAGTTATTTGAATGACGCAGCTATCGCAATGACACCAACTACACA ACGCAGAATAAAGAGATCATCAGCAACAAGTTTTGGGAGTCATGATGACGTAGATATCGATATTCAAGAA GATGATGGTCAGCTAATGACATCAGAAATACGGTGTAGTGGACCACCGACCTGGGAGGACTACCGGGGTT ACATACAAGCAATGGGAGGCTACATCGCTGCCTCCTCAATCATCTTCACCTACATCGTGGTGATTGGGAT GCTAACATTTAACAACTGGTGGCTGGCTTACTGGATAGGAGAGAGTAGCAACCGACCGTACAACGAGACA TTGGATGAGGAAGCGCCATCGCTAGTAAACGACCCTAATCTCTGGTTTTACATGCTGGTGTATGGAGGTT CCCTACTTCTCATCTTCATTGTGGCTGCCATTAAGAGTGTCATCTATATGAAGCTTACACTGAAAGCATC GTCCACCTTACACAATAATCTATTCCCGAGCAGTTATACGTAGTCCAGTGAGCTTTTTTGATACCCACCT ATTGGACGAGTGCTCAACAGATTCTCTAAAGATATAGATGAGCTGGATGTGATGCTGCCAATCAACATGG AAATGAGTCTTAATTATGTCCTGACGATCGTTGCATCGTTGATCACCATCTGCATAGTATTCCCGTATTC CCTATGCGCCGTCATCCCAGTCATCGTCGTCTTCTTCTTCATCATGTTCTTCTATCGTAAGGGCGTCAAC GACCTTAAGCAGTTGGAAAACATGAGCCGATCTCCATGGTTTTCTCACATTGGTTCGACTGCAATGGGAC TGGCCACCATCCATGCCTATGACAAGACCGATGATGTTATCACAAAGTTCGTCGATCTACTGGACGTGAA CGCATATCCTTTGATGCTGTTCCGGATGGCGAACCGTTGGGCTGGAGCACGTCTTGAGCTACTTGTTGTT CTCATGGTTACCATCACCAATCTCATGGTTGTTCTCTATCACGGTAAACTGCCGGCGTCAACCGCTGGCT TTGCCGTCGCATACGCAATGCAGCTAACAGGAATGTTCCAGTTGACAATGAATATGCTGACAGATACAGA AGCACGATTCTCTTCTGCTCAAAGGATAATGCAGTATATAAGGGACATTAAACCAGAGGCTCCTGAAACC ATCAAGTCGAGGATGCCCGAGAAAGGCTGGCCAAGTCGAGGGGAGATCCGACTACATCATGTCGGGATGA GATACCGAGAAAACCTTCCGCTGGTTCTCAAGAATGTAACGTGCACTATCAAGGCAGGAGAGAGGATTGG CATCGTGGGGAGGACCGGATCAGGGAAGTCTTCTTTGAGCGTTGCCTTGTTTCGTCTAGTGGAGGCTGTT AAAGGAACAATAACTATCGATGATGTCGATATATCGGAACTTGGTCTATTTGATCTGAGATCTAAGATAT CCATTATTCCTCAAGATCCTGTCCTATTCATCGGTACCGTAAGATATAATTTGGACCCATTTGGTGAAAA TAATGATGCTGATCTGTGGCAAGCATTAGAAAAGGCCTACATGAGGGAGAAGATTAGTTCTCTAGATGGC GGTCTCGATGCTCTTGTTGCAGAAGGAGGAGATAACTTCTCTGTTGGTGAGAGGCAATTGATGTGTATGG CGAGGGCACTGCTTCGGAATAGCAAGATCTTATTCTTAGATGAGGCGACTGCAGCCATTGATACAGAAAC AGATAGCTTGATACAGCAGACAATACGAACAGCTTTCAATGACTGTACCACACTCACCATAGCACATCGA CTTATTACAGTACTAGACTCAGATAAGATTCTTGTCATGGATGATGGAAAGGTTGCTGAGTTCGACTCGC CCATAGCTCTACGGGCAAACCCAAAGTCTATCTTCAGGGGGATGTTAGCCGCAGCTGAATCTCAGAACAC CTAGCTCAAGAGTCTATCCAGGAAAGGTGACGTCAGAGGTCGCACTCCGCCGAGTCAGAAAGCAGCGATT GAGAAAGATGTTTAGAGCTTGACGTATTGTTATGGTGCGCTATACAAATGCTTCATATTAGTCTAATTAC TGTTTGTACCTCCGAAATCTTGTATTTCTGCCATAGTTTTATATTTACCTCACATATTTTAACGTTCATT GAACAATTGTGCAACATGGTAGCCATTCAGGAAAACAGTATCATGGCTGAATCTGAGAACAGCTAGCTAA AGACAATTTATTTCTAAGATATAAGATGGTGTAATTGGCATTAGTTGAATCATAGAGGTATTACAAAATG GAGTCCCAGCTCGCTATATTGATTGCATACAGCTGACATAATTGAAAGGATGCACAAATGAATCTCTGAA ATGCTTTGATTCTTCGATGTCGGAGGTTTCACGTCGCCGAGGTAGACAACAGCGATTGAAAAAGATGTTT AGATTTTAAAGTATTATTATGCTCAATTAGTATGATGAATCAAGAAGCACAATAAGTAAACACGCAGTTG CATTATAATCATTTATAGTAACAAAGCCTCAAAGTTTAAAAACTTCTTGATATATAAAGCCTAGAAAGTG TCACAAACATACGCTTCATGTGCAGAGTTCAAGTCTCTTTCTCATTCATTCCAAGCACTGTAATTCGTTA TTTCTATCATGAAAGCTTATTCTGTAAAATAAAACATTTACTATTAATGCCCTCACATGCCCACTCGAGA TATTTCCATTTAGTCCGGGATGTTAGGACAATTTAGGGGCAGTGTGATGCAACTTTTAAAAACCCAATAT TCTGCCCATTGTTAGTGTCTCTTCGTTGTGCAAGATGAGGCTATCTGAATGTTTTCATCACCCGCATGGG AAGTACATTTACATATTTTGCATGCCTGGTGTGGCGGCACAGAAGCTTCTTTTTTCTTCAAAGACAAGCA CGTATAGTAACTCCAGCTGTATTATCTCTTTGGTTTTACAACCTTTCGTGCTTACAGCCAGTACAAGTAT ACGAGTACATGCCATTGTTACCTCTAGACGTTTTCACCTCTAGAGTTTTTACCTTTGACATGTTTACCTC TGACATTTGTTTACCTCTGACATTTTTACATCTGACATTTTTACACCAAACCATATACATAACACACGCT CCTGATGTACGATTTTTTCTTCTTCTCACTTTGAGTCAGTTCATCAATTTCTAATTGTTTGAGGTAGCGT TTGGAATAGTTAGGCTCAAACTTCAATAAACAGAATATTCATGGCAATAGAATCTCGAGTATGTTCAGAT GTGTGGAAATGTAGGCTTTTGTTTCCCTCTTCTGAGGACCCGATAGGCCAATTAGGATATCAATTTTTCG TTTTGTAGTCAAATTTAATATGTATGTTTTTGTTATGTGCCTCGTTACGAATTGTTGTTTTTTCATTCAT CTGTTACGAACAAATTGTATTTTGATATTCAGCATGCAAATTGTACATAATAACGTGTCGTTAGGTATGA TAAGCTATAATGTTTGTCCAACCTAGCAACAACTAATTATAATCGGTCTAACTATAAGCCAGTTTGTAGT CGCTAACTTTGCATGGGAAGATAGTGGTCATTTGTACAACATTTTAAAAC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
