Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038217870.1 PREDICTED: Patiria miniata spastin-like (LOC119741918), transcript variant X3, mRNA CTGCCCTCTTTGATCAGCAGCCGCGACTACGTACGTACGTATTGTGTACGAGCGTGAAAAACATGTCTGG ACCGGACTCGGACGAACTTATCGCGCGTCCGTGGCCGTACGTACGTGCATTACGTGTATGGACGGCGTCA ACATCACATGCTCATGCCGTAATCGGTTGCAAAATCGCGGGGATCTACCGCGGGTACGAGACCCCCGGCC CGATGCCCCGTAACAAGCCTAACGAAAGAGCCCGTAGCCCCAACGGTCTCAAACGCAAACTCAAGCCCGA ACAACGAGAATCTCCCCATCGAAGGAACCTTCGTTTTGCCAGCTACCCACTACTCTTCATTTTTGGACTT CTTCGATTCATTGTCTTCCAAGTTTGGATGCTTTTATCGCACGCTTTTTGGCGAGTGACGGACATCAAGC AGAAGTACGCCGTGGATCGTTCAGCAGCGTACGCCTCTGTGGAGACTACCGTGAATGGGACGCATTTGAC GGGGGTGACGATAGCTTCCAACACGGACGGTAAAACTGGCCAATCTAGCCCGTCTGGAATGATGAATGAT AGCAGTTGTAAAGAGGCTAACTTGTTAGTGAAACAGAAACAGCACCACAAGAAGGCCTTCGAGTACATCT CCAAGGCGCTGAAAATTGATGAAGAGGACGGAGGAAACAAGAAGTTGGCACTGGACTATTATAAAAAGGG CATCAATGAATTGGAAAATGGCATCGTCATCGACTGTGAAAAACCAGGTGAGGAGTGGGATAGAGCAAAG CGACTACGGGAGAAGATGAAGACCAATCTGGAGATGGCGAAGGAGAGACTTGAGCTTCTCAGAAACGAGA GAATATCTTCACCCAAGATGACTCACAAGACCAGCGTCTTGCCTCGCTCTACCCATCGTGAAGGCATCCG GAGCAGAAGCCCAGCGACACCAGAGAGACGACCTGCTACCTATGCTCAGAGACATAGCCATGGATCAGAG TCAGCGCTGACTACATGCTCAAGGGGAAGAGGCCTCACTAGGAAAGACATCACCAACGCCAACCATGCAC CAACCAATGAAAGAGCACCGTCGGCTGTGAGGCTGAAAATCAACAAGTTAAAGAATGTGGATTCCAAACT GGCGCACCGCATACTGGATGAGATTATGGATAATGGGCTACCGGTTAAATTTGAAGACATTGCGGGACAA GAGGTAGCCAAACAAGCCCTTGAGGAGATTGTTATTCTGCCGTCTCTCCGGCCGGAGTTGTTCACCGGTC TGCGAGCACCTGCCAGGGGCTTGCTGTTATTTGGACCACCTGGTAACGGCAAAACAATGCTGGCCAAGGC AGTTGCCCATGAATCCAATGCAACATTTTTCAACATCAGTGCGGCAACGCTGACGTCCAAATATGTGGGT GAAGGGGAGAAGTTAGTCAAAGCGCTCTTCTCAGTTGCTAGGGAGCTACAGCCGTCGGTCATCTTCATAG ATGAGATTGACTCTCTCTTGACTGAGAGAAAGGAAGGAGAACATGAGGCAAGCCGACGACTCAAGACAGA ATTTCTGCTGGAATTTGACGGGGTGACGGCCGACCCAAATGAGAGAGTCCTAGTGATGGGAGCAACAAAC AGACCTCAGGAGCTGGATGATGCAGTACTGCGGAGATTTGTCAAGAGAATATACGTCACCATGCCTGAAG CTGAGACAAGGAAGGTGTTATTGACCAGACTGCTGGCTAAGCATCACACCCCTCTGACTGACGGAGATCT GACCCAACTAGCTCAGATGACCGATGGTTACTCAGGGAGTGACCTGACAGCTCTGGCCAAAGATGCAGCG TTAGGACCGATACGAGAACTTGGCCCAACTCTTGTCAAATCAGCAGCCGCTACAGAGGTACGAGACATCA AGTTATCCGACTTCCAAGAATCCATCAAACACATTCGCTGCAGCGTTCAGCCTCATCTTCTGGCCACCTA CGCACAGTGGAACTCCGTGTATGGTGATGTCGCTGCACTTTGACGACCCTGCACTAGAACTTCTTGGACA GTGTGCCTGTGTGCCGCCCTCTTGTGACAACAGACAGCCAACATTGTCAATTGTGGTGTAGCACCCTTGA GCTAACTGGACTTTGACATTTCTAAGCCAAGCTTAACTTTTTGATTATTCTGCACATTCTGTATACCACT CTGGACTTGTATAAATCTTGCTTTTTGTCACAGTTTTATTGTACCTAAACAACCCCCCTTAATTTCCATA CCGTATCTGGATATGCAACACTGATTTGCCTTGTGGTAGAGCGTGTTGGCATGAAATTAAAATGAAATGG CAAAAGAAAGTAAACACTGTCTAAAGTTTTGTATCCGTAATCTTAAGTTACAACTCCGATCTATTTACAC TGTAAATACAAAAGTGCAGTCTCGTTTGTCTGTGTAAAATCACAAGTGCTCGTAGTGACGCTGCAAAAGA TCTACCTCTAAAATAAAAGTTTACAAAATTAAAATTTTGGTTGAGATTTCTGTGATCGCACCATTTGATA CTTTTCCCCTTGTTTGCTAAAATTGACATTTACTAAAATGGACATTTTCAAAACTGGATGAGATTTGATC CAGATCACTGTTAACCTGAAACCCCTCCTTTTTGTAAGCAGAAATCAGCAAACAGTTTTGATGTGGCTCG TTAGATGATTCATATTGCTGTTATCTGTGAGGTTTGCGGTTATTTTAATGTACACTCTATATTTTCCTTG ACAGTTTGGCCTTATTTTTCTTGGGTATGATCTCATTTTTGTTTGTGTTTACTACTCCACGATACAAGGA TGGGTTAATTCTGTCAGATTTGGTTGATCAGAGTATGATCTTAAAATTCCTAACTGTAGGATTCTGTTGG ATTCTGTGAGATTCTGTGGGATTCTCACTTTGTGTGTTTAGAGGAAACCCGAGGGGTTTATTGTTGCGTT AGCAAATTCGATTCCCAAATTCCTCCTTTATTATCTCTGTATTTTTCTTTTAAAGATTTACCCTAGAATT TCCTACAGTCAGACAAATATTTTACAGTTTATATAGCATACCATGACATACTTTTCATTTAGTGTGCCCT TCGAAAACTTCCTTTGTAAGGACACAACAAATTAGCAATTTTGTAACTTGAAGGAATGACTTGCGCTGAA TTTTTCCTTGGCCTTAAAATACCATCAGGAACAAAAGTCTTCCAGAAATTGAATGCATGCTAAACTCCAT CAGGTATGTTGCTTAATGCTTTTTAATAACTTGGTCTCAAGCTTCATTCCAAAGTATGCAAAACTTGGAA GCAATGCTTGCAATAAGCAGCATTATTCTGTTAATGTTATAATCCATGTTTTGTCATTTTTACGAGGTAT TAATTGTGATATTGTACCAGTGACCTCTTGCATACATAGTCTTATTCTACAGAGACTGGCAGTTTGAAGC ATGTATAATCATTTGAGAAAAGGTTCTACTTGCAGTTAGTCAAAATTCGAAGTTTTGTGAGGACAATGAA ACTCAAGTCTTTTGTAGACAATTCTTCCACAGTCACTCAGAAAGTTTGCATTTGTGTACACCGACAGAGT TTTTTTAACTTCAGAATTTGTTAGACACTTTTTGCCAACTTTGGAAAGTTCTCAGGAAGTATTGGTCACT CCTCAACAAGTGCAGCCCTAGTCTGAGTATCGCCAATTGTCTTAGGAGCCCTCTCTGTAACGAATCTCTG ATTATGTCAGCAATGAAACTTTTATGCGACCCCAGGCACCAGCCAATGGGAGTCGACTTTAGAAATTGTG ACATCTTTTTGATCAGAAGCTGTTGATTGGTCAATTTGGCTGCCATGTTTTTGTAATACATGTACAACAG GTTACCGAATACCTGATAGAAGGTGCCTGCTGAATGGTTAGCATCTCGATGGTCTAGTCTCGTTTTGCAT TTGTCGCCAAATCTGCTCGCATATCATAGACCCTTGCTGTGCAAGGGGATATTCCATAGACTAGTGCACC CCCAACCCCAGCCTCCCCCCCCCCCCAAAAAAAAACCTCAAGAGATGAATTGCCATCTCTACTGCTTCTT GGCCTTTGCACACACAGAGAGATGACCTGGTTTAAAGAACTGACCTCAGTACATGCTCTGATACCAGCCA ACCATTTTGCAGCTGCATAAGTTTGACCCCTCTGACAAACTTATTGAAGCTTCTTGATTTGCAGCACATG TCTAGCTTTTACCAGGATATGTTGGTGTATTTGTGTAGATTTTCATAGTTCCATCACTATTTTTAAGCTG ATTTTGCCATGTTTGAATACTGTTGGCTGAGTTTTTCTTTATGGTCCAAATTACATAATCATAGCTCCTT GAGCAGAAAATAATTTACTTAGTCCAACTGTTCATGGAAAACCGCTAATGACATGTAGTTGTGAAAGGGA TAGGCAAATGTGAATGTGGGGTCATATCCCCAAGCAGTAAGATAAAACTCTTTTAAGAAAACTTATTCTG AAATTGATTATTCAGTGTGAAATAAATGAGAGAATACTGGTCATGTTGATTCACTGGTTATGTAACCTCA AAAAGAAACATTTTTGTCTGAAGTATGGTGATGACTTCTAGGTAAGTGCATCGGTAGTGTACCAGTTCTT AAGGGCGATCGAATTTCCTTGGTACGCAGAGACGTTGTTATTCTGACTTCTCTGGGTGGAGTTGGAGTGA CTCATCTTTAGTTTTGTTGATAATTATGGCTCACCCATCCTGTGAGATGGACTGAGGAAAACGAGGACAG ATAGTGACATCCTATCCCCAAACAAACTTGCAAATCAATGAAAAACTATAAAAATTAATAAAAACAAATA ATTTACACCAAACAGAACATGGATAAAATTACAAGCAGATAGACTGAATGAAGTTATTGGCTGGTAGAAA AATATCCGTGTCATACTTAATGCAAAAATGTATCCATAAAAATACATCACTTGTTGCACCCAGGAAATTG GATAACTTCCACAAATACAAACACACCAGATATAAGTTTGTATTTTCTTTTCAGAATCTGGCTACATTCT GATCTTTTTGCTCAAATGGACTACAACACTTTTTTTTCCTTTTTAATTCCAGAAATTAGAATTTTTACCA CTGGAGTAAAAAACTGTTGCTTGACTCAATATGTGTGTTCTCCCCCCCCCCCCCCCCCCCCCGGCCAAAA GTCTTTTCGCACTTTTTATAACTGCCTTTGAATATTTTCATATTTACCAACAATTTTGAGCATTTTGTAG TTGGCAGGAATTGTGAATTTCCTTTGAACTTCCAAAGGTTTTGTAGTAGTGTCAAGTGTGATTTTTTTTC TCATCTGGAATCTTTCATAAGGTGTGGTGCACTTTTTCTAATCAATACTTTTCTTGTAATTTTGTATATA AAGATGCAGGTGAATTAGTGGTGTATTTGAGATTTTGTTTTGATTTCATGATTTACAGTTTATTTTATTC CATTGTTTATTTAGATTAAGCAGATTTTGGTAATTATATTGTTGAGCGAGATATCAGCTTATGCGTAGCA CTAAGACGATTCATGAAGAGGCAGCAGCCAACTATAGCAAATACATGTATCACACTGTAAGCGCTACCAA AACATTTACAATATTTGCTTCTAGCTTGTAATACATCTTGCCAATTTAAAATTTGTAATCAACATAGACT TGTCAAACAGCTATAAATCAGGGAAAGGCATTATGGAGATTACAGCTTAATTATTTAAACCCTCCCATTG TTTGATCAATCACAGACAGTCAAAAATTTCTTCCCCATCCCTTGCCATGCATTTGTATACATAACAAGTA CAAAAAAAAGTCGGATCGCATTTGTGTTAACACTATGACCGACTAGTCAAATTCCATCAACAGACAAAAG AGGTAACTGGTAGGTACAGCTGGCATATCAATCACCTCCAGTCAAAGCGTGGCTGTATCAAACTAACGAT GAAATTCTCAACCGTTCAAAACAGTCACTTGATTGATTCTGACTGCTGTGATGTGTAGCTGAATCTGTCA GCCAGAGAGGGAGGGTTTTTAATTCCCTGCTGGAGTTTTCTTAATTCATACAAACTCTGCAAACCAGCAC CAATGAGCCAAACCCAGTTCATAAATGGTATCTCACCCAGTGTTTTGTACATACCTGTTCCTTTGTCAAA ATGCCAAATCACGCTTTGTTTATAAATGGTAATGTAATATCTTCATTTCATTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds