Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041614879.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121420303 (LOC121420303), transcript variant X3, mRNA AAAACAAACTCCAACAAAGACCGAAGATATTTAACGTATCTCAATAATCTATATTGTCTTCATTATCATG GCTACCAGAAGATGTTATTTGAACTCATCCCAGTGAACGAGCAAATCATGCAAGACAATGTAAAAGATGG AATCCCCCGGTAATGACGATAGCTTTGTGAGCATTAGCCTGGATGGCAAGGAGTGTGACATCTGCTTGCA AGACACGGGTCAAGATCTCACCACCTGCGATGTCTGTGCCAGGTTTCTTACCACTGGGCCAGTTCAGGAA GGGTTTAATGAGCTCCCTGAGGTCATACACACAGACACTCTAGGGCATCCTTCATGCTTCAGGAAATTCC ACAAGCTGGCCAGACGACTGAGCCGCTCAGCCGTAAAACTTCAAAATAACTCACCGACTGATGGGAGCAC ACAGTGGCTGAACTTCAATTGTAACAACCTCGGCAATGAGCTTCTCCTTGAGAACATTCGTAACCGGGTG AGCAAGAGCAATCCTGGCTCGCGAAGCGGCAGTCCTCAATTCTCCGGTGTGAGACAGATCGGGAAGCTAA AAGACACAGAGCGATGCAGGAGCGAGCCTTTCTTGGAATCGTCCGCCCATGAGTTGCGTCGCGGCTACAC CAAGTACTTGTTCGGGAAACGCGAAGGAGGCAATGGACAAAGTGTTAAAGTGCCTGAGGGTAGCCCTGGA CTTGTCCAGGATGGGTCACATGGTCCTATCAATGAAGTGCCTGGAGCAGCGGTTAACCATGAACAAAAAG ATAGAGACCTTTCTAACAAGCAAGCCTCTTGCCATCCGGAAAATAGCCGTCCTAACTCTTGCCAAAGCAA CCATGATCAGTATTTGATGAAGACAGTGTCATGTCTGTCCATCCATGATGAAAAACCTCATAGACTTGTA GATAACCGAGAGGCTGAAACCTGCAGGCATTCCAGAACTATAATTGGACATGAAGAAATGAGGCATAGTA ATTCAGATGGAGATGACAGTCATCGTTCTGTAAAGGAGAATAAGAATTATCTTCCATCTGACGAGAAAGA AACCTGGAGAAATGTCAGACATATTGACAAAGAAGCCTTACCCCTATTGGAAATTGCTGAGCTGAGAAGC CACACTGAGATGTTACAGCATGCAGTGAATGATGCTTGCTCTCAGCTAGTCCAGCATCTCCAGGAGAAAG ATGTTCTGAGCAGTGAGGTTGCATCGCGTCACGTTACCATCAAGAAACTGGTAGAGAGACAAAAGAGTCT CCACCACTAGATTCTTGCCAGTAGCGATCTACCTTCACAGTACTTTCTGGGTTTGTGACTGAGATCAAGG AAGTGGGGACGTTTCATCACAATGAAGAAACTGGTAAAGTGACATTAGTCAGCGGACCCTCCACCACTGG ACAATTCAAGGTTTACTTATGAAGGTTTGTAAGGATCAACATTTCGTCACCGTTAGAAATGGTAGATCTA TAGATTAAAGAGCCTCCACCATCACTAGACTCCGTCCAGGTAACGATCTTGATGTTCTCTATCAAGATAT GTAAAGGATCAAGGAAAAGGGGCGTTGAGTCACCACCAAGAAACTGGTAGAAAGACAGAAGAGCCTCCTC TACTAAACTCCGGCCATGGTAACGATCTCAATGCTATTCTTCATGATCTGTAAGAATAAAGGAACGTCAG CATTAAGAAACTGGTAGAGAGAGAGATAATTTCACAAGATACACCCATCTTGCATATTGTACAGTGTACA CATCTGTGAGGCCAGTCAGTATAAATGTGATAGAAATACCACAGATCACTGGTCATTTTTTTATGCCTCT TTTTTGCCTTGAAATAAAACATCTATATTTTTTTCTATCCATTAGATTTGCAACAATATTGTATAAAATG TATGCAAATATAAATCTATGCATGCTTGAAAGTAGTCTTTAAATTTCATACACATCAAGGAACATATGCC ATATATTTTGCATGTGATAGTTCACATATTTTCTTAGAGATATTGATGGGTTTATTTTTGCAGTGTAATT ACGGGGGTTTTGTGGAAGTCATGAAAATAACACAATCTTGCAATATTCGTGAGGTTTTTTTGCAATATGA CACAGGAGGGATAAGAACACAGTACCGTAAATGTATTGAACACATCAGTCAAATGACAAAGACAAGCTGG GAGGTCTTTGTCAAAGACTTGTGAACTTTACGGCAGTTTCGTCCAAAGTTTCGGAAGCTGACGAAAAATT GCAATCACGTCGTTTGTCCAGAGTTCAGGACGAAACTGCTGTTGGATTCACCAACTTTCGACAAAGACTT CAGGGTCAATCTTTGTCATGAAGGATACTTGACAATACATTTTCTATGTTCTTGAATCCGTCGTGCGTCG TGGAGTGAAAACTCCCTTTGAAAGGGTATGCAGCAGACTTATGTCATTGTATTTGGACATAATGGCCCGA ATTCACAAAGGTGGGTTTGAAAACCCATGGTTGAGTCCATGGTTTATGGCCCGAATTCACAAAGGTGAAT TTCCTGTACAGATTTCCTGTGTGAATAACGCTTGATTTACTGCATATACCGGTACTGAAAAGTGTCCGAT GCTGATGCACGCTTTTGTCACAGTGCGCCAAATTGACTCCTGTTGCTGTGGTTAAGTGCGTGATTTTTTT ATTCATGAGTCCACTCTTCAAACAGTGGACTCGTGAATAAAATAGCATATTTAACCATGGTAACAAGCAT CAATTTGGCGCACTGTAACAAAAGCGCGCATGAGCAGTGGAAAAAAAATATGCGCAAAATCATGCGTAAT TTATGCACAAAATCTGCAAAAACCATGGATTCAACCGTGGGTTTTCAAGACCACCTTGTGAATTCGGGCC AGTATGCCACGCTACATGTACAGGCATTTCTTTATATTCACATATGTACTGTACAAGTTCATTTACATGC AGCTTTATGTGAAAACCAATTGGTTGACTCTTTAAACTGTTTTTGAGGCTGAAGAGAGTGACATCCATTT TTTTAAACAATTGCCATTGATATTATTTCTTCATTTCTGAAATTTTCTGTGTGCTAGTCTGCAAGCTGTA ATGTCATATGTCCAGGGTTTGAAACTAATGCGTCATTTGGAAAGGGGATCTACATTTGCCACTCTCCACC CAGGTGTAATGAATTGGTAGGGAGGAATTCCTTGAGTGCTCAGGCACCAGATCAGGCTAACTGAGAAAAA GCGGATATTTTCCAAGAATTCATATTGGCTCTATTTCAAATCTGGATTCTGGATCAAAATTTTCTATAAA AACTCATATGGAAGTTCACAAATACAAAAGGGGGTCATAATGAGCTTAACAAAAATTTCTTACACATCCC TTTATGGGAATACATGTATATTGTTTTTTGTTTTTTTTACTTATTTTTTTTATTTTACAGAAAACTTGTT TTTTTTATTATTCTCAGTTGGATAATCTGAAGGTCATCATTTTACATCATATAAGAAAATCTTCAAATAT AAGTTGCGGGAAAGTTTAATGCGACTGACCGTAATGGGACTGACCAGAGTTTTTCTTTCCACAAAAGAAA ATTGAAGCCGCTTCCCAAATTCAAATGCCTTTATTTGACACTTCTATTTGTAAGTAAAGTTTTACAGGTA TTGAAATTGGTAAAAGTGATTTGATGTGAAAGAATTATTAAAAAGTAATCAGTCACATTTTTCTATGTCC TTTTTGTGTAATGCGACTGACCGATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
