Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041621152.1 PREDICTED: Lytechinus variegatus Hermansky-Pudlak syndrome 1 protein homolog (LOC121425153), mRNA ACACACATCTTGGCCGTTTGCTCTTCGAATATGACCCCAGCGCCTGTCTTGATCATGCGAAATTTCCACA TCTAAAGTTTAGTTAGGCCTACTAATTTAAGATCTGTGTTTGCCTGAAAAGACTCAAAGATGAAGTGCGT ACTGGTAGTCCGGAATCCTAGCATGCCCGACATTGTCTTCATGTGGAATGATTGTGAGTTCAAGACGCAC CTTGCTAAGTCTGCATATGATCGGGGCCTGACAGAGCCGGATGAGATCCTTGGGGACTTGGACATCAGTG TTGTGACGCAGTATTTCTCACCGATCATCGCATCCCACGGACTTCTCTCATCGGAAATGAACTGCCCTTA CTCCAGTATTACATGTAACAATGACTTCATCTTTGTGATGAAACAATTTGGTCAGCACCTGTACATAACT GTCAATGGAGACGGAGAGGAGACTGAGCAGTTCCTTCACAAGAAGCTCTTGGTCTTTCATCGCATTATTC AGTTCTTCTATGGTGCAGCAACAGAACAGTTGCGTAAGGATAATCCAAGTCAGAGAGATTTATTATGGGA TACCTTAGGCTCTGTCTTGGATAGCTGGTGTGAGTTGTACCACAGGGAACAGTCCTTTCTTTTGGAGGCT TTGGAGACTCTAGAAGTCAACCAAACCTTGAATGAACTCTGCATCGGGCTCTTGGAATCTGTCCTTCTCA AGTTTAAGTCTGCTGGAGATAAGAATGCAGCCCACGCCATGTTGATTACAGGAGCTAAGCTCTTGCAGCT CTATTCAAGTCGCAATGCACCCGAGCTCCACCAGTCCGACGTCCTCCTGATTGTGACGCTGGCTCGGTCC CTCTTCCCTGCACCAAAGGGCCCTCTGCAGGAGATACAGGACGAAGCATCGTCTCAGAGAGGTGGAGGAG GAGCAGGATCCGACAGGGAGAACAGACAGTCGGGTGTCTTCAGCGATGGGGAGTTCATGAGTGCTGGAGA GGGAGGAGGCTCAGATGGGTCACAGTACTATAGTCCAGCCAACACGCACGAAGACCGAAGCCCCTTGCCA TCAGATGACCCGGAAGAAGAGAAACCAGACGCCAGTTCCAATCCTCAAACTGAACAAGAACCAATACCCG ATGGAGAGCTGCAGGGGTCATTAGCAGGTAGAAGGTCAAAGGGTGAAGGTCAGAGGTCTGGGAGTACATC AGAGGATTCTCATACGGATAGCTGGTGTGACCTGGCTGGGGGTCATGGAGCAGACACGGCTAGTATACCT TCCATTGACTGCACTCCGGGTGGGCGTGTCCCAGAACCCCCAAACTCGCAAACCATCTGGTATACACCCA TTGAGGGACCAAAACCCCGGGATGCGGACACCAGCAGCACATCCACCCTTAATTCCGATCAACCTTCGAC TCCCTCCAAGTCGGCCATGCCCATCCAGAACACGACCCCAGTGCATGAGACCGGTCCGGCCCCATCCACC CCCACCCAGGCCTCCGAGAGCTGCCATTCCACCACGGCTTCACTATCGTCAGGGGCGGCAACCAGGAGGA GTAGGAGGGATAGGAGAGCAGGAGGGATCCTTGACGACGCAGCCCAGATGATGGTGTTTCTCCAGCAGTC TTGCCCGTACAGCCCCCACGTTCTCCATGTCGTGCGGCTCCTCCCGAGCATCACGTTGGTGGTGGTGTCA GAGATAAACAATCAGGTTGCGACATGGGTCAGTAACTGCTTGAAGCGCCTGAGTGATCTCCTGAATGCCC TGTCAAGGAAAGAGACAGGTGAAGCACTCCAGAGACAAAGCAGCGTAGGCAAGCTGGATGCAGATCTCAA GCAGCTTGGGAATGCCGTCAAGAAGTCAAGGATCCAAGGTGTACAGCAAGTCCACACAGATCTCATCAAG CAGTGGACGGTCGCTAAGGGGTGTGGCTTGACAACAAACCAGGGATCTAGTGTTTCTATGGCACAAAGAC TGGAATCCATTCTCTCGGAAATGGGCAAAACCCTCAAGACCATCTTCACCCGTTGCTACGTCCACCGCAA CGCCCCCCTGATACGCCCCCCATCCCGCTACCTGCCGGTCATCGGGGACGTGCGTGCATCCCTGGAAGAC TCACTGACCCTCTACCACGAGTACCTTGCGGTGCGGGCGGAGCGCAACATCACCATGACCAACTACCTGG AAGATTTTCCTGGTCTGGTGCACTTCGTCCATGTGAACAGGACCACCGACAAGGTGCTGGCGCCCTCTAT CAACATCAGTTGTGAGTCGGAGCATGTCGGTGGCAAGAAGAAACTGCTCCAAGAGAAGGTTTGGAGCATG GTTGAGGAGTGTCACGAGAAACTTCAGCAAGGAATCGTGATGGAGACGGTCCGAGAAGGAGACTTCACTC TCTCATATCTCCTGTACTTTGAAGACCCAGGGGGTCTGCTTGTCTTCAACAGAGGGCTCCCCAAGACTAC GAGGAGCCCAGTCCCTGGTATACTAGCTGGAAAATATTTCAGAGAGGTAGTGGCCCATGCCTTTCCGGGA TTGACAGGGGTGACCTGCTGTGAGCTGTTCTGCATCCATCTGTCAGTGGTCCCCTCGCCGATGATAGCCA ATCACATCCGGAGGTTGAGGATCATGCTACGCTCTGGCGATGCTATTGCTCCGGTAACCCTGCTTTGAGT CTTGATGAAAGTTTGAGGATCAGGCTTCACTCAAGAGATGCAAGTCATTCCAGTAGCCTTGCTTTGTTTA GTGACAACATTTCAAGGATCATGCTACGCTGTGGCGATGCTTTCGCTCCGGTAACCCTGCTTTGAGTCTT GATGAAAGTTTGATGATCGTACTTCACTCAAGAGATGCAAGTCATTCAATTAACCTTGCTTTGTTCAGTG GCAACATTTCGAGGGGCATGCTACGCTGTGGCGATGCTTTCGCTTCGGTAACCCTGCTTTGAGTCTGGAG AAAAGTTTGAGGATCATTCTTCGGTCAAGGAAGGCAAGTCATTCTAGTAACCTTGCTTTGTTTAAGGACA ACATTCTGAGGATCATGCTCTGCTCTGCAAATGCCCGAGTTACCATGCCGTGAATTGTGCAAAAAGCTAG AGGATTATGCTTTCTTCTGGAAATGCTAATGCTCCAGATAAACCTGCTTAACCCTGCTGATAGGCATGAA ACTGATTGGATGATCATACTATGCTTTGTGCTGCTATGTCTCCTGATACTCTGCTTTTAGGATCACCCTT TTCTCTTTAGGATGTTATCGACCCTATCACCCCTCTCTAAGGTATGGCCAAGTAAGAATACTCTTGATTT TCCTATTGACCACTTGCTTGAAAAACCAGGATATAAGTTTAGCTCCATGGAGGAAAACCAATGATGTCGA TTGATTTAGAATCTGTCTTTGTTGTACTTAGGCCCTCGATAATGTAGATTGTTGTACAGTATTCTATTCA TGCATATATTTATTAATCTCTTGCTGATAGACCAAGTCCACTCTTGCCAGGGTTACCCCCACCATTGATA GCTAGGCACATTGGTAGGATGAGGAACACTTCCAGCTAGTTAGGATGTTGTCATTCCAGATTCCAGATAC CCTGCTGTGCTGTGGTTCATAAGAAAATAAGAATAGATTTTATTGTTGTTGTTTAAAAGTCAAAAGTACA TGTACACTCCTTCAAATATGATTTTAAAGAAGAACTAAACTCAAACAAGCATATAAATCCCATCACAACT GGATGTAAATAGGTAAGTTATGTAATTGTGATGTTTTACGTGTATACAAATGGCAAGTATTAAGTGCCAG TAATATACAGTGATTCTGAATAATTTGTTGACCCCACCAGAAAATGAATATATTTAAAGTGTTCAAGTTC TGCCATGTCTTAGATAATTGTGAAGTCTATTGATAAAATATTACATTCAGCAAAGTTTGTTTCTCTGGGC TCGCCGATCATCGTAGTGTTGTCTGTTTTCAATACTTCGCATGAAGGAGTGCATTTTGTGGTGGGGCTCA CTACATGTACATTTGAGCACAATTGTATGCTAAAAACAGACGAGTATACTACCCGCAATTAAATGGTAAT TGTCTGAACCAGTTTTTAGAACTGTTTCTTTACAATGACATAGGTTTACACAATGACATAGGTTTACATG AAGTTGAGTATAGGTCTTATTCAGGTGCGTATCATCCAAAGTTCTATTGCTTCATTGTTTTCTACAAGTA AGGTATATGGTCGATTCCAACGAAAAGTGTACAAACACATTTTTTGAGGTACAAATTTCAAAGTGGTTTA AACTTTATTTCTTTTCACGCCTGCAAAAAACATAGGTTAAACAACTCATAACAAAAATTGCCATCACTAA TCTCTTAAAATTACCTTGTGCTGAGGGGGTGAAGTTAAAGTAAGACAAACGCCTGTTACCTACGAATACA CGGTACTTATGTTACAAGCACACAAAATTATAAAACCATATGATATGTTTCATTTGAACAAAAGATGGTA AATTAATTACAATGCTATAGTGATTGTATGTACAATTATTTTTATTTTATAGTCCCATGTTAGGCTGGTT TCTTGCATAATAGATTTACTTTACCTTTTTTGAACTAGTGAACACTAAACATGACATTGCTTCACTTAAT GTAGTTTCATTACCTTTTTAATACAAGTGCTGAATTCCATGCAATTATAAGTGGATGAAGTACCAATTTT AGCCAGCGATCACTTTTTAGCACATATCTTAAATATTTCTTCTGACGATTATTCGAAAAATGCGTATTCG TAGGTAACTAATTGTATACGAAGGTAACAAGCACATTACTTATGAGGACAGAATGGTTTACTTCACAAAC CAAAGCCCCGTCGTAGCTATTATCAAACTTAACAAGTACAACGTATTTACATCGTATTTTCAAGCAATAA AAACTTACTATATACTATAACAATGGTTGTTATGCTTTAAACTTACCATGTGGGTAGTATAATCCTAGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds