Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038202524.1 PREDICTED: Patiria miniata LHFPL tetraspan subfamily member 2a protein-like (LOC119729781), transcript variant X1, mRNA AGGGCGCTATCCATGTCTCAGAAACCAGAATCGCACCGTTCAATTTCGCACGTGCTGCATGCACACTTAT TACTTAACTTTTGGACAACACGGCGGCATTATGATAACATCCTGTCCTTGTGCAAACTTTACGGATCAGC CAGACGGCCCCAGGGTCGATGTGCTGTCGTGGACGTCAGGACAAAGGGAAAAAGTGATGAGTAAGTTTGA TGATTCACCGTGCTGCTTTGTCGGCCTGGGGGCAATTCCCGCCACTTGGTTACGTAATCTGATGTTGATC ACTTCCGCTATTCGCTTCTCCTTGGAAGAAAACACGCAGTGTGTTGATGATGATGTCTCGTCAGCGCAGT TCGACTATTTAGCTGGCTGGACCGTGGTTCTTTACTCTATAGGCTGGATACTGTCTTTATTGCCCGAATT GGCTGATGAATGATCGACAGGGTTGTTGTCATATTTTTCTTGACGAAGATTTCAGAATGTTCATCCTGGA TTGTGATTCTTCAACTCAAGCTTGCCAATGTAACATGAGGGACAGATTTATTGGTTAAGAGATCAAACTT CATGTTGGACTGACAACAGCTTCATAACTTCAGATTCTACTCAGGTACTAGCAAACATACCCCAAGCTGA CAATGTGCTATCTGATAGTGACAATACGCTCCCTGCTTTGGACTGTGGTCAGTATTGGTATCGTTGTGAT GCACGTCTTTGCCATCATCAACCCGGATTGGCTGCTCCGCGACGACCGGCCTCTCACGGCCGCCTACGCC TCAACCACACCCAACGAAGACGTGTCATCGCAAAACGCAACGACAGAGTCTTCCCTCAGACCGGACTCGG ACATTCTAATCACACAGAGTTCCAAGGTGGGATTACTGACGTTATGTACAGAGCGGTACTCGATGAACAC TCTGCGTTACGTGACCAACAACGGTGAGCAGTCCAGAGCTGAGGAATGTGCCTGGATCGCCAGTTTCTTT GAGTTGCCTATTTGGTTGTGGATGGTGACTGTTGTTCTCTACTGTCTTGGTGTAGCCATTCTTGGTTTCA TTGCCGTTGTGTCGGTCTTCACGATGTGCTTTAAGAGTATTTGCAAGAAAAGCCTCTTCACGGTGTCGGG ACTTATACAAGCAATCGCAGGTCTTCTGATTCTCCTGGGTCTGGTGATGTACCCTGCGGGCTGGGGCTCA GATGCCGTCACCGAGCTCTGCGGTATGGACGCCGCCCCCTTCCAGTTTGGAGCATGCTCACTGGGCTGGG CATTCTACGTTGCCGCTGCGGCCACATTCCTTACATTTGCCTGCGCAGTGTTGTCCGTGCAGGCCGAAAT TGCAACATCCAGCGACGATGTGCAAGATGAGATACTGAAAGGGAAATACGTCATCTGTCTGCCGTGATGA AAGAAATGTGTACACGGATGTTTTTCGGACTGAGGATGGTGACAGATCAGTGTCCAAATTCACCGTGCCA CTAAGCATGCATGCAGCTAGAATGAAATATCCTCTTTTTAAAAAATTGAAACAAAACTAGTAACAACTTT ACGAAGACTTTACACTATGTTTCTTTAGAACAATGGAAGACTTTCCTTTTGGAGGAAATATCAGGAATTT GTGCAGTGATTTGTAGAATTTGAGACCCCCAAATGCAAATATCAGACTTCGTGTGCAAAAAAGGGGAGAT TTCAGACATTGGGGTGAACAATGTGTGAGAGATTCACCTTCAAATACACTTAACAAAAACATTTTATTTA ACAGTATAATTTTAGAAATAAATAAAAATGATATATTAACTGCAGATGCAACATTTTCCACTCGCACTAA AAGAAAAGGCAATAGGAACACATTCTTTGTTTAAAAACTGAAAAGCATGAGTTTTGTTTTTTGTAACGAA CTGAACTGAATACCATGACTTTTAAAAGTTTACATTTAAATGTTTTATATGAAATGTATATTTTTGTGTA CATATTTTTGTGTCCATAGCACAGTGTTTCCCTGATGAACAAAATAAGGCCATACATTATTAAATTATAT TATTTGTTTTGTTTTGTTATGACAATCATTAAAATGGATGTGAAGTCAGCATTCCCAAGTGACCAAGTGA ACGATTTGTAGGTTACGTAGTTTACATACTTCCTAGTTTTTATATTTTGTTTGTGTATTGGTATTTTGGA AGTCATGTGAATAACCCTCAAAAGTATTCTGGAAGTTGAAGTTGTGTGGCATGGTTGCAGCATGACGATG CATACTTGTAACCACTCTCGGTTGTCAGATAAAGAGTCGTCAAGCAGATAACCTTTGCTATGGAGGTCAT AGTGAATACATCGGTAACAAGTCTAGAAATATCTGAAATTTTGAAATGGAGTAGTCACAGGTCATTTTAA TACTCAAGTATGTTCAAGATGCTCACTGTACAAATGCATGTACATAAAGACACTGTTAACACAACTCTCT GTAAATAGTTTACATGCCTTTTTGGCATCTAATTTGTACGTACACATCTGTTGGCATTGTCCCTTCAGAT TTAAGTTTTAAGACTTTGTTTTGAAATATTTTTCTTTTGAGAAAGGGCTCATATACATACATATCAAGTT TTACAACTATTTATTATACATGTAATATGGATAATAAAGTTATTTGTTCAGTTAGTAAAAAAATGTGGAC GCTTCTACATAAACACCAGGAGAATAAGTTCTGAAATACTGAGATTTGACTGAATCTGCTGGGAGTGGCT GAAGAAATTTATAGACATCACGTCAGTTTCGGTCATTTAGGGGTGGATCTCTAATCATAAATTTGAAGAC GGGTGTTCTTTCCCCCTACCCAACCTATAATCAGTTTCTACAATGTACATGTACATGTACTGAGGTGTAA GCACATGTACATGTAAAATACATGTACTTCTATTTTCAGTTGTTAGTTGAATAGTTATTGTGTCTGTATG TTAATTTAAAGGTTGGTGTTGCAATCTGCACATACATGTATGTATGCAGTCTTGGCTATTGAAATGACAC ACTCTTGAAAAGTATAGATTTCTGAGCACCAGTTTCAATATATTCTTGTTGTTTAGTCAGTCCAGACATG TTGGATGCAAGAGAAATTTCAGCAGATGCTAGACATACCTGTCTTGAGTGTTCTCAATTTATTCACTTCA TACAAGGTACATACGTACATCTGCACAATGTGCATGTACATGGCATGATGCTCTTGTCAGTTGTCGGGCC AAGAATTCAATTTGTCCGGATCCAGAAATAGGGTCGTTAACGTCATTCGAGATCAAGCCTGATCAGGTCT TTATAAGGTTGCGGCCTCAGTTAGGTTTTGTATTTTCTTAATACATGTAGGTATTTTTGCCAGGAGAGAG GCAATTGTAGTAAAGTGTCTTGCCCAAGGACACAATCACCATGTTCCCTGTCAGGGTTTGAATTTTTATG GTACATTTTGTAAAATCTCAGGAATTTCATATTTTAATGGGGATTAAAACAAAAAAGGAATCTAGGAAAA ATCCTGAAAAATCTCACCTCTGACAGAAAAAGCCGACAAATCACACCACTACTCTAGAACCATGGCCAAT TTACAGATGGAAACAGCAAGCTATATTTTATGCAAACCAGAAAATAAATACATCTTCCTACGCAAAAAGT CTTCCCTCAATAGACCAATGACTTCCATTCTTGGATTAATTTTGGCTAATCATTGACACAATCTCCTTTT CCCAATCCAAACTTCCATAATTTTAACATTCAATGTTTTTTTTTTCAACTTATTTTTGATAAATCCGATG CAGTGCGCTATCATCTCTGGTTCCAAAGTAATTAATGTTCTGCAGATGTGGCACTGTCGGTGCGCGCTAA TAACAGGCAATGCAGCACAAGTGTTCCACTGTCGCGTTGGACTGGGTTCGGGTTAACTTGATCCAGCGTC AGTCTGTCTGTGGACATTGTAGAACGCACTCTGTTGGTTTTAATCACACAGTAGCTGGCAAGAAAACAGT GAATTGATACGTGCAATGTCTGAAAGACTCCATCTCCCTGTGAATTTTGAATAGATAGAGCAGCAAGTAA TTTTAGACTGCATGTGTTAGGTGAATCAAAATTGCGTGGATCAACCCCCCTCCCCCCAAATTTTTTTGAA ACCGTCAGATCTGTACTGAGATGCATAATAGAAGAATGCACACATGATAGTTACATTGGTGGTGAGAGAA CATCATAAGCTAATTCTGGCAGTGAACAGTAAATGTAAAGATATGATTTCAGTTTACATGATGCAGAGGT GTTTTTGATTACAGCTCAAGTATTGCTTTAAAGTTGCTAGTTTCTGACAAATCCTAAGCATTGTGAATTA AATCATAAGCCTTATTCAAGAAAATTGATTTGTCTTTATTTAGGTTGAAAGGGTGTGATCTATAGGGTGT GGTCACTGCTAGGAACTGACAAACTGAAGACAAAATAAAGAAACTTTACTTATGTATTACATGTAGCATT TTAAAAAATGAACAACAATGTAGAACAGCCTGCTTTGTACACATTCACATTCCTACCGTTTGATTCAACA CTGGTCACTGTACTCGGGTTCTTACTGAAAATTCTTCCTTTTTAATACATGTTTGACTTGCTGACACAAA ACTAGAGCGATTTCACAACAATGAACTCTCAAGATGTTGGCATCAATAAACGAAGCCCCCAACATTTTGA GGGTTTTCAAGATTGTTTCCTGTTCAATTTTTGAAATGTTCTGGAAATCCGTATATTGGAAGAGTTTCAG TAGTTAGAGAGTTATGTCTTTAAAAGGGATTTGTGGTAAACATTGCTGAAATTAGTGTCAGTTTGCAAGA CAGAAGGTCACACTATTCAACTCTGGGGTTTTTTACATCTGAAGTCACTTTCTATAGCTGTAAAAGCTGT ATGATAGACAGCTTATCATAAAAACATTTGTGGTGTAGATACTTAAGATACATCCTGACACGCTTTCTGA AGTATTTTGAAATTGGCATTCCATGTTGATGGCATTTGCCACATCGTATTTTTATTTCTTCCTCACCTTT GTGATTATTCAATTGTAATGAGAATATTACTTTTGTAAATATTAATTTGTTGTGGGGGAGTATTTATGTG TGCATGTGAATAATCTAAGACCTTTGTTTTCACATAAGAAAAGATTTTTAAAAGAAAGGGGAAAACTTGT ATTGTTATAAATATGTTAATATTATTAGCTACATTTACAGTATATGTTTCAAAGACATGATAAATATTGT TTCTATGTGTTGTTCGTGTTTGCTATAAATTTGTTGCACATGTTCATTTTGAAAAACTTTCGTTAGATGT AGCTGTAGTATAGGCCTAAGTTGATTTGTGTGTAGTTGGTGAAGATGCAGACCACTAAATCTATCTTTCA AGAAAATATTATTGAAAAGGGCCAATGGTTTTATGTAGTTTTCTATTACATGTATATACAAAGGTGTGTA GAAACATGTAAATTTCATTCTTGTGAAATACATTGTTTTTATTTTGAAGTATATTTTTCAAACCAACAAC TCAAACAATTGCCATCATGTGACGAAATGTGTGGAGACTTAATAAGATATTTTAAAAATAAAACATAGTT GTATACATGTAACTGCAGCTGGAAGTATGAAAATGATGGCAAAATGATTTGTAGATCATATTATAGCCGA CAAACTTTACTTTATCAATAATAGGAAAGACTTGCTGTTGTTATTGTATATGAGATAGAAAAATTGTAAA CATGTCTACGGAAAAATCACTGTTTTGGTAGATTGGTTTTTTTTCTTTTTTAGCAAATCAAACTGAAGAA GCTTTGATTGTTGTTGATGTAAATTGGATATTTATTTATACTGTAAATTCAGGTGACTCATTTGTACATT GTCTTTTCAGAAGAATTTTTTTTCATACCTTTGAAATGAATCTGGGCAATAAATATTACTTGGACAAGGA AACGTCCATTTATTGTTTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds