Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974587.1 PREDICTED: Strongylocentrotus purpuratus protein scribble homolog (LOC574871), transcript variant X2, mRNA GCCTGTGACGTCACTTGGGCGGACATCTTTGCAAGAGCGAATTAGCTTTTACTGGATCTTCACATATCGC GGAAAAAACTACGGAAACTGGGCGAAACACACAGTTGTATTTGCCCTTTGCAGCCGTGGATTTTCCTCAT TTTCGGATATAATCCACATGCTGACTTCGTCTGTGGATATACAATCGGACGGAGGAGGATTTTAGATCGC CATGTTCAAGTGTATCCCGCTATTTCGGGCCTGCAACAGGCACGTCGAATACATCGACAAGAGACATTGC AACCTGCCGGGAGTACCGGACGATGTGTACCGCTATGCACGTACTCTGGAGGAGCTGCGATTGGACGCTA ATCAAATCAGAGATTTACCCAGACATTTTTTCCGCTTGACCAATCTTCGCATCCTTGGACTCAGCGACAA TGAACTTGAGAGACTGCCAGCGGAGATTGGCAATTTCATGAATCTCTTGGAGCTGGATGTCAGCCGCAAT GATATCATGGAAATACCCGATAACATCAAATTCTGCAAGGCTCTAACGATTGTGGATTTCAGTGGAAACC CACTGTCAAGATTACCACCAGGCTTCACACAGCTCCATGATCTGAGACATCTGACCCTGAATGATGTCTC CCTTGAGAGTCTACCGCAGGATATTGGCAGTATGTCCAACCTGATAGCCATGGAGCTACGAGAGAACCTG CTGAAGGTGCTGCCAGACTCCCTCTCCTTCCTGGTCAAGCTGGAGACCCTGGATCTAGGGAGCAATGAGC TGGAGGAGCTCCCGGAGACCTTGGGAGCGCTACCCAACCTCTCAGAACTCTGGCTGGACTGTAATCAACT CACCATCCTCCCTCCGGAGATTGGAAACCTAGGAAACCTAACCTGTTTAGATGTGTCAGAGAACAACCTG CAGTGTTTACCCGATGAAATCGGAGGTCTGCAGAGTCTCACAGATCTCACATTGTCACAGAACTGCCTGG AGAAGTTACCTGAAGGAATCGGTAAACTGAAAGATCTGAGTATCCTTAAGATCGATCAGAACAGACTAAT TACCCTCACGCCTGCTATTGGGAGTTGTGAGAACATGCAAGAACTCATTCTGACAGAAAACTTGTTACAG GAAATACCACCAACAATAGGCTCCTTGAGGCACCTCAACAACTTCAACGTGGACCGAAACAGATTAACCC AGCTCCCAGCTCAGATCGGCAAATGCACACGTCTTGGTGTCCTCTCCCTCCGTGATAACAGACTTCTCCG TCTCCCGCCAGAGCTCGGTCAGCTGCGAGAGCTTCATGTTCTGGATGTCTGCGGTAATCGGCTGGACTGG TTGCCCATCCAGCTGGCTAACTGCAACCTCAAAGCTCTGTGGCTCTCAGAAAACCAGTCACAACCCATGC TGAATTTCCAGACTGAAGAGATAGGACCACAGAGACTGAAGGTCTTAACATGCTTCCTACTACCGCAGAA GGGACCATCAGAAGGAATAGACTATGACAACTTCCAAGACAATCTGAACATTGGTGCCCTGGATACAGAT GCAGTTAACTTCGAGGGCAGGGCGAGGGCCATGTTTGCTGATGGAGTCGTCGACAACGAAGGCAAATCTA CGCCGTTCTCGAGACAAGACACACCCCACCCCAAGGATCTCAAGTCCAGACATCCCAAGTACTTAAAGGC CAAAGAGGGCGGCAAATCGGAAGATGAAGCAGAGATGGAGAACGGTGGACTAGTTGTTGAAAATGGGCAC ACGGTGAGCCCCCACGGAGAGGTCCAGCAGCAGTTCGTCTCGCCCGTTGGTGAGGGCAGGGGAGTGTCCT TTGAGACCAACGTTGCACCCACCATCGCCGTGACGACATGCTCCGCCCCTGATGGTGAGGCGGTGGGAAG GACTGATCTGGTGGATGGATTGGAGGATAAGCTGTCTGTTGATGGTAGGACAGGAGGACTCACGCCAGAA GACTCGGATAACGACATAGACAGGCATGTTGGGTTCGCCAGTGACGTAGAGGACGTGCTGACGTCGGAAG ACATCAGGTTACACAGGAGAGACACGCCTCACTATCTCAAGAACAAACGGGTCGACATGATCGGGGAGCC GGACCCTGAGACAGCCGCCCTGCTGGAGAAGGTAATAGCTAGGAATTCAGTCAGCTCAGTAGGAATGGAC ACCAAGGAAGAAAAGATGGTGATCAACTTCAGTCGTGATGGCAGTGGTCTTGGTATCAGTATAGCTGGTG GAAAGGGGTCCACCCCATACAAGGGAAATGATGAGGGAATCTTCATCTCAAGGGTAGTAGAAGGAGGAGT AGCAGCTAAAAATGGTCTCACACTAGGCGACAAAATTCTAGCAGTAAATAGCGCCAACTTGGAAAACGCA GATCATTTAGAAGCCGTGGAAGCATTGAAAGCCGCGGGCAACAACATTCACATGGTAGTGACCAGAGAGG TATTAGTCTCCTCCGAAACCATGTTTCAGGAACCCCCCTCTCCGAAAGTGGAAGTGTCCGCAGATGAACC TGGGCTGAATACATCAACACAGCCGCTCTTGACCCAGGACAATCCCACCGCTGACACCACTGCTGAGCGA TCAGGCGTCAAGTTTGCCCCCGAACCTAAATTCCACCACCTAACAGAGAAGATAACCCTAAAGTTAGTCA AGGATAGCAATGGCCTTGGTTTCAGCATCGCTGGGGGTAAAGGATCGCCTCCATTCAAGGGAACAGACGA TTCGATATTCATCTCCAGGATATCAGAAGGTGGTGCTGCTGACAGGACAGGGGCCCTGTCAGTTGGTGAC AAGGTCTTGAAGATCAACAATGTGGAGATGGCAGAGGCAAGGCACGAGACAGCGGTGGCGCTGTTGACAA AGAGCAAAGAGATTGATCTGGTCATTATGAGGGAAACCATGGAGATTGAACACCATGAACCATTAGTCAA ACACGACCCACCAGAATTCCGGTATCGGATGAACGGGCCAAACTCTAATGGACCACCCGAGGAGCTTGAG ATCGAGGAAGTCTTCCTGAAGAGAACGCGAGGTCCATTAGGTCTGAGTATAGTCGGAGGCATAGATCACT CCAGTCATCCGTTTGGAGGTGACGAGCCGGGCATCTTCATCTCAAAGATTGTCCCCAACGGTTCAGCGGC CAGCACCAACCTGAGGGTAGGTGATCGTCTTCTCGTGGTGAACAACAAGGAGATGAAGGGTGCTACCCAC CAGTTTGCCGTCAACACACTCCTATCCAACTCAGAACACATACAGCTAGTCGTCAGGCATGACCCTCCAC CTAAGGGACTCATTGAAATCAAAGTACCCAAGGCTCCTGGCGAAAAGTTAGGTATCAGCATTAGGGGCGG GAACAAAGGTCACCCGGGGAATCCCCTGGATCGAGGTGATGAGGGAATATTCATCTCAAAGGTCAATGAG GTTGGTGCTGCAGCCCGTGATGGGAGGTTAAGAGTAGGCCAGAGAATCCTGGAGGTGAACAGCCAGAGCA TGTTAGGTTCCCGGCACCGAGAGGCTGTCATGGCCCTCCGGGGATGCGGAGACATGCTCGGCATCCTTGT ATGTGATGGCTTTGACCCCAGTGAGGTAGATTACTGGCAGTCCAGGCCGGGATGCGCTGGCAACCCCCTC TCTCAGGTGGACCTCAGCAAGAGGAACAGCCAGGAGAGCATCTCCTCCATCGACAGGGACATGACCACCG AGGAACTCAATCGATTAAACCAGGACGCTGAATTTCAGTTAGAAGCCCAGGAATTTGAAGAAGAAGAATT AGCTAAACTGGACGGGAGAGAGGAAGAGATGAGGAGACAACGAGAGGAAGAAACAAGAAGATTAACAGAG GAAAACGAGGAAAACTTCCAAAAAATCATAACGAGAAACGTTAGTAGCCGCTCCCCTCCCCTGGTTAGGC AAGAAATGATGCACGCCCAGGAGCAGGAGGTTGAGACCGATGATGACGAGCTGGATGCCCCGTTGCCCCG CCTCAGGAGTCCGTCTGAAGAAGATTTGATAAATGAAGATTTTCAGATGGAAGAAGAGTTGATCCCACTG AGGGTTGACACAGAGATTGAAATCAATTCCAAACAGCAGGCTGTAACAACAGAGAATGGAACGGCAGATG ATGATGATGATGATCTACCCCTTCCACAAGCAAAGATGGAGCCCAGTACTTATGCAACAAGTGGCTTTCG AATTTCCCAATCACTAACAGAGGGTGTAAGCTGTAGTCCTCACGTAACAGAACGTACTGACGACCCTTCA TCTGTAGAAATTTTTGCTCCAGATCCATTTGGGGAAAAGTTGCATCAAGAGGGGAAGAAGGAGGAAAGCG TTACCCCTCTAGAGATAGGAGGAAACCCACACCCTTCCTATCACAATCCTGGGCCTTCTCATGAAAATCC TAGACATCGTAATCCCAGTGGACACAACCCTGGTACCCCTGAGCACTGCCCTGAAACCGTAGAGCATAAT CCGCATAATCCAGGTGGGCACAATCCGGGATATCCCCTGCAAGGGGCATGTTCTTTTACAGGAAGAGAAA ATCCTCATCCGCAACAGAACCCTTTGTCCCATGAGCAACATAATCCGGTTAGTCCTGAAGAATGCAATCC CGGAAATCCCAGTGGCCACAATCCTGGAAATCCAAGTGGCCACAATCCTGGAAATCCCGGGGGCCACAAT CCCGGAAATCCCAGTGGCCACAATCCCGCTGGCCACAATCCTGGTAATCCCAGTGGCCACAATCCCAGTG GCCACAATCCCAGTGGCCATAATCCTGGAAATCCAAGCGGCCACAATCCTGGAAATCCCGGGGGCCACAA TCCTGGAGATCCAAGTGGCCACAATCCTGGAAATCCCAGTGGCCACAATCCTGGTAATCTCAGTGGTCAC AATCCTGGAAATCCCGGGGGCCACAATCCCGGAAATCCAATTGGCCACAATCCTGGGAATCCCAGTGGCC ACAATCTCGGAAATCCCAGTGGCCACAATCCTGGAAATCCCAAAGATCACAACATTGACAATCCAATTGG CCACAATCCTGGGAATCCCAGTGGCCACAATCCTGGAAATCCCAGTGGCCACAATCCTGGGAACCCCAAA GTCAGCAATCCTGGAAGCCCAAAAGACCACAATCCGGGAAACCCTAAAGACCACAATCCGGGAAACCCTA AAGACCACAATCCTGGGAATCCCATAGAACCCCATCCAAAGGAAGAGGGGGCACAAGCAAGTTCCAATCC TCACTCACAGGGTATTCAACCAAATCCTTCTCCATCAGACAATCCTTCAAGTCCTCATCGTGTGACATCC CCAGAGCCCTCTGACAAGCCCAACCCATTCCGAAATCCTGCTGCAAAGCCTAATCCTTTCAAGGAAACTA CAAGTCCTGTCACTTATACAGACATAAGGCCTAAACACAAAGTTATTATTTCACCAATTAAAAGTCCAGT TACTCCTCCAAAGCCGAAACACTACCCAGACATTCCTCCTAAGAGCCAACCACTTTCACCAAAGTTCCAA CCACTTTCACCAAAATCCCCTAGTGAAGACCCTTCTTCTTCAGATGATGAAGAAATAGCAAGAGCTAAAG CACTTTTAGAAGCTCGATCGGAAGTCCTAAAATTTAACAGGATTAAGGGTCGCGACACAAGCCGCTTCCA GTCCAATCCATTCTTTCAACAACAACAGCAGCAACAAAAGCCGGCTGCACCTGAAGTGAAGACAAAAACC CTGACCCAGCTGCTGTCTTCTCAGAAGGTTGTATCAAAGGCCAAGTCTGTACAGAAAGTTGTGTCGCCTC CACCACCTGTCTCGAGCTCACCGCCTTCCTTCAGCCCTGTAAAGTCTCCCCTCTCACCAGAGCCTGAGCC TACACCTCCCGAAGATCCAAAGCCTGCCACGGATGGTTCGGAACCCTCCAAGCTAGCCTTCAAAGACAAG TGGAAACGCTTTGAACAACAGATCGACGAGCAGGCACATTCTACACCTAAAACAAATACCAAGAAAGTAT CTCTGGTCAGCGATCAAGACCTTCAGAAGATCAAAGAGGATGAAGATAAGAAGGTATCAGTGATGACCCC AGATGACCTTCTCAACTACTCACAGGGCGGGCTTGATGCAAATAATACATTCAATGCCAGTATATCAATT AGTCCCATTGGTGCAAAGAAAGATGGTTCCAACCACTCCGAGTTATCAGCATCAGAGCTCAGGTCAAGAG AAGCTGATGAGAAAGCCATTTTAAGAGCTGCAAGGATGCAATCTCTAGAAGACGATGCATTACAAGCTGA AAGGGCGATCCATAAAACACAAGAAATCAACAAACTAAAATCACCAGAAACAGAATCAAAACCCAAGGAA AATGGTGAAAACAAGTCAGGGTTAACGATATCATCCGATGGTCTCAATAGCCTTGACGAGATCCAGTTTA TGGATGAGGGCGACGAAGATTAGAGAGAAGTTCATGCAAGGTTTACTGTGATGCCTTGACGTCTCGCCCG CCGTGAAATGGACACTGATTTTAACGGGACCTTGATTTTTTAATGGAGATTGCCAGAGGTTGAAACTCGT CACCATGAAGCCATCAATACCTTACAAGCTTTGTGATTGGTCGAAACGAAGCCATTGAGCTATGAATGTC GGAAACAGTCCCGGTGATTGGCTCATGCCCGTCTTGCTTCGCCGTAACTTAGCAGAGATACTGAGAACTC AACAGCGAAGGAGATAAACCTCTGTGTGATAAGTAATGCAGTGACGTTAGAAGACACTTGGACAAGACAG AAACCAACATGTGTGTTCGCCCATAATTACAAAGGTGTTCTGATTTTATCAACATGCGATTTTAATCCTC TTTTTTCTTGGATTGATAATTTTAACTTTTTAAAGATTTTAACCAACTTTTTAAAGACTAGATTTGATTG AAAATGCTATCATATGAACCCGAAGAATTTTGTATTGATATCAAAGGTTTACAATGATGGCCTCTCGACG GAGAGCGCAAGATAATTGCTGGATGATTTTGATAGATGTGGATTCTCTCAGAAAAAGGAAGATTATGAAA AAAATATATATACACAGAAATCATACTTTTGTCAATGAAACTGCCTGTCGTGTGACTACTGGAGGACAGA TATCATGAAATTGTTGTAAATAATTCTAAAAATGAGCACAATATTCACCAAAATTACTGCCAAGAGTTTT TTTGTTCTGTTTTTTTCTTTTTTTTTAAATCAAGAGATATTATGACAGTGATATTCAAATAGTAGTGATG ATTTATGTATATTATGTGTAAAATCTTATATACAAAAATGATGCTTTTTTTTATTATTTATTCTTTTTTT TATTACAAAAATCTAGTTAAGGAGAGAGCTCAGGTTGTGTGATGAAATTCCGAAGATCAGAAAGGGTGAA ATATTGGGACCAATTGATCGTCTTTGGAATTTTCTTCATTTAGTGGAATTTATGTTAATGTCTGGAATGG TTTGATTATAGAATTTCTCACTAAATGTAGCCTACCAGTGTTGAGATCCAAGGCCGTCATTCTCTTAATG ATTACTTTATAAAATTAACACCACCAATTTTTTTTTAGTAAATAGGCCAGTATAAAAGAGTCTCTTCAGG GTGATTTTCCCCCCAAAAGTATTCACTCCGAGTCAAAAGTGCACTAAAAGACGAGGAGTCACTCCATATC ATTCAAATTGGTCACATAACATTTATTTTAAGAGCTTTTTCTGTGGTCAAATCTACTTATAACTACAGTA TTTATATTTTAAAATGATTGTTAAGCAATTAAGAGATTTTTCTGCGATCTCTGAACCGAACCAGAAGACA AGCAGTGATTTTATTTCATGTAAATGAACAAACATGTTGATGAGTTAATGTATTGATTATGTAACTCTGG GGTTCTGAATATTATGTTTAGCATTGAAAAAGGAAGAATGAAATTGTAAGGTATATATGAAATGAAGAGA TAGCTTTAATGAAATAAAATAATGCATGATGTGATGTAATTTTTTCTTTTCTTATTACGTTTTTGATCTT GAGCAAACAGTAATATTGTCTGATGTTTCGATGTTCATGTATCTCTACAAATACAAAATATTTGCAAACT GTTGCCTTTTCATATTTAAAAAAAGACATATCTGTACTCATTTTATTGTACAAAGAAAACACTGTTGCTA TTGTCTCAGTCAATAAGATATATTCTGCATTCACTTGCATTTTTAGCCAGAATTTTAAAATGTCCTGTAG ATGCCTGTAGGTGTAAAGTTGTTTTTAATATCGCAGTCTAGATTCCTGTACAGATTGTCAAGATATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds