Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011663566.2 PREDICTED: Strongylocentrotus purpuratus chromatin assembly factor 1 subunit A (LOC584359), transcript variant X3, mRNA ACATAATGTACACACATAAATGAATTCTGCTGAGCTGTAACAGATAGATATCAGTACTGCACTTGACTGA GTATGATCGGTGATGTTGATATTCTCGAAGTGGATTCAAAGAAAAGATCTCTAAAATCAGGAACCATGAC TGACATAAAAAACGCAGAGATCATCAGTCCACCAGCCAAGCGAATGAAGCAAGCTCGGCTTCCATTCTTA ACCCTCACAAATAAGCCAAATCTTTCTTCAACTCCATCACCTCAAATCACCAAGAAGTCCAAGTTGGCAG AAAAGTCTGGCTCAGGAAAAGCGAAACATGTCGATAAAAATACAACTCCTCTCAAGAAAGCCGACACACT GCAGGGTAAGAAGCCCGGTACGATGAAGGCACGGAAGATAGGTTTCAGCAGCAGCGAGGTAGCAGGTAAA CCCTGTGCTCCTCCTGAACCAGAGGTCAGTTCCAGCTCGGAGGATACCAAGCCCTCAGAGAAGGAATGCG ATTCCACGGTAACCGTGGCAAGCAGTGACTGCACCTCGACTGCTGCATCTTCCAAAAAGATCCCCAAGTC TGCATCCTTGGATCGGTTTGTGCAAAGTACACAGCAGCCTCATGTCTCGACCTCGGCCATCATCGACCTC ACTGATGCCGATGATGAAATGGAGGATGATGAGGACTTTGAACCTCCCAAATCTGCGACCAAGAAGAGCA AGGCTGAAAAAAGGAAACGAGAGAGTCCTACCCAAAGTCCTTCCGATACCAGCGCCAAAACCCCCGAAGT ACCACAAGAGGATGATACAGCCATTAATACCAGTGTGTCTTCAATATCTTCCCTTGAGGAAGCTTCTTCG GATGAAGAAAGCTGTAAGGAGGTTGGTAACCATAGCAACAGTTCTGAGAAGGATAAGGAAGACATATTGA TGGAGGCTGTTGAGAAAGTCTTGAAAGAGGAAGAGGACAAGAAACCACAGGAGGAGTCCCTCAAAATTCC TGCAACACCTGTTACCCCATCAAATGCTCTGAAGCCTATCAAGCAGACACCAATGTCTGCCAAGGCGCTA CAGAGACTCAAGGAACAAGAAGAAAAGAAGGAGGAAAAGCTGAAGCTCCGTGAGGATAAGAAGCGCAAAT TGGAGGAGGAAAACGAGATGAAGAAACGGCAGAAGCTGGAGCAGAAGCAAGCCAAGGAAGAGGAGAAAGA AGCTCAGAGGAAAGAGAAGGCAGAGGAGAAGAAGAAGAAGGAGATGGAGAAGCAGCTGAAGAAGGAGAAA GAGGAGCAGGAGAGAATGGAGAAGAAGAAAGCCAAGGAGGAAGAGCGCCTGAAGAAGCAAGAGGAGCTAG AAGCCAAGCAGGAGGAGAAAAAGAAGAAGCAAGAGGAGCGCATCAAGCAAGAAGAAGAGAAAAAACAGAA GGAAGCCGCTGAGCTTTCAAAGAAATCCAAGCAGTCTCAAGTCTTCAAAAACTTCTTCAGCGTCCAAGCT CAAGCTCCAGTCAAGAAGCCGGAGGTCAAGGGGTGGTTTGCCCCCTTTGAGGTCAAGTCAGACCAGGTCC TGGCACCGTGCCGACGAGTAAATCCAAAGGATCTGGACCTGGAGCAGGTCAACAAACATCTTGAGGCACC ATCAAGTGGTAGCTTGTACCTTGATGAGCTGAAATCTGGAAAGTTCAAACCACGCAAAGATGTCCGCACT CCTGGGCCTGCAAGAGCTGCACAAGAAAGTATGGATGTTGCTGGACCATCCATACCAGAAGACGTTCCAA CGTCCAAGAAGAAGAAGAAGAGGCAGCCCGAAGGACCCAAGAAACCTGATGGACTCAAGATGAAAATGCT GCAGTTCCATGAGAACTATCGACCTGCCTACTACGGGACATGGCAGAAAGAGACGTCTGTCGTCGCAGGA CGCACTCCCTTCAAGAAGGATACGGATACCTTTGACTATGAGGTTGATAGTGATGATGAATGGGAAGAAC CAGGAGAAAGCTTGTCTAATTCAGAGGGTGAAGATGAGGATGGAGATGCAGATAGTGATGATGAGGAAGA GGATGGATTCTTTGTTCCCCATGGTTATCTCTCAGCCGGTGAAGGAGGGGAGGATGATGAGGATACTGAC AATCTCAAGGCTCGGCAGGCGGCCAAGGCTAAGGCGTGGGACAACGAAATAAAACGACGCTGCGAGGCCC TCAAACCAATGATCATCACCTTCATCCAGGTGGCATCGACCAACAAGACGCGTCAGGACGAGAGGAAGAA GCTTGAGGCCTACCAGGCCATGCCTCTCACCAACCTTCCAATCGCGACTAGCTTCACCAAGCGAGAGAAA GCCAAGGGTAAAGAGGAGAGTAGCAACGCTATGGAGGGAGAGGGTGCTGCTGCTGGAACCCAGAGGCTTG GTGGTCGCATGGGCAACAAGCTAAAGCCAGTCCCTGAAGAAGCTATGCCAGAACTTATGAATCTAGTACA TGGTAACATGGCAGGGATCAAGTCACTGATCCGTGAATTCAGGGACTACTGGCGCCGTAAGCAGCACCGC CTGGAGTCATCAAGCCCCGGAGCCGGAGCACCTGCTGCTGCTTCTCCTGGGGATTCACCATCTCTTGCTG CAGGAGACCAGGAGGCTGCCAGAGAGTCTCCGGTCGGAGAAGCAGGATTGGCTCCAGGTCAGGATACTAG TCCTAGTCCAGTTCCAGGATCCACCGGTACTCCATCGCCGCAGTACCTAGACCACATTGGTCATGTCATA TCTAAACGACAGCTGGACCTCAAGATCAATTACATTGCTGTGAGGGAGAGACGTCCACAGCATTTCAAGC GCATCTGCTGGTACGTGCATGACCGCTTCCTGGAGAAATACAAACTGACCGATTTGCCTGTTCCCACTGC TTGGGTGAACGGTGTGGGGATGAGTGATGGACAGTCGTCACCACTGCCACCAACTAACATAGCAGCTAGG CCAGCTGCAGCTCTACCCAAACCTGTAGTGAGTAAACCTGTACCGGCAAAGGTACCTAATCTGTCTGAGG TTGGTACTGTCAGTAGCTTGCTGAAGGCATCGAAGGAACATCGGGCAGCTCTGGCGAAGCAGCATATCTT CATCCCATCGAACACAATGCCTTCGGCTTTCAACAATGTGGTTGGTGTGTCAAGTGCCTCGGGTACCTTG CACCTCCAGGGGGGTACCCAGTTCCAGAGTACCCCTTCTATCAGCTACATTCCACAGGGAAGTACCCTTG TGCAGCCTGGACTTGTACCCTTTCAAGTAATGCCAATCCAGATGCAGCAAGCCATCAACCCAGCAGCTTT CAACATGAGTAACCTCCTGCAACAGGCTGCAGCCTCCAGTCTTCTGGCAAACATGCATCATACATCGGCA CTTGGCAACACTCTTGCCCAACCACCCAACACCTTTGTCCAACCACCCAAAACCAATGTCCTCCCAAACA CTAAAGGTGTTCCACAGAATATGCCAGGGGTTGCACAGAACACTATACGACAAGACCTTACTAGTGTGAA GCTGAAGCACTCTGCCCCCATCTTAAAACCGAACGTCAGATCTCCTCCACCTGGAGGTGTAAAACTAAAC AGCTCTGCAGATGGGTCCGCTGGAAGTGCGCCCTCTCTGCCATCCATAAAGAAGGTTTCCCCACAACGTC TCAATTCAGCTATTGCCAAGCTCTACGAGTCCAATAACTTGTCAGAGAGCAAGGAGAAAACAAGCCCGGC TCCTGTCAAGAAAACCAAAACCCTTGCTAGCTTCTTCAGTGTCCAGAACCCCAAGAAATCTGACAACAAA CCCCAAGAAACTCCCTCAGAAACTCAGAAAGAGTGAAGAAACAGCCCCTATACCCTTTTCTTATCATGTT TGATACTGTAACATGTTGTTCCTGTATTTCTAGTACATGTATGTTCGAAATATTAGCGAGCAGATAGATT AGACATACCAGTTCCTTAGAATGTCCTTTTTGTACATGCCGTCCTGCAGAGAGGTAGAAGGGTATTGACT CTATGTGAAAGTTCTTTGCTAAAGCCCCATCTGGCTCTCAACGGACGATATCCATTTTCATTATAATTGA AAAGATGTACCCCTCCCTTCCCCTACCCCGTTTAACTGTTCCGTTTTGGTTTAGCTTTTGTTCCTAGTAT GTTTAGTGTATTGTGTTATGTTATGAATACATCTGCTATTCACTTAAAATAAGTTCTGTTACTATATGTT GGCATGTTTTTGTTTATGAGATTTCATTTCTTTTGGTGTCTTCTTGAGTATTAAACTGTAAATTGCTTTT AATTCTCTCTCTCTCAATTCCATTAGTATGGCATCTACTTCTTACTTGCTCCGTTTGTCCCTCTCAATTT GAAACTTTATTTTCTTTCTTTCTCTTTCACCCAAACATATCATTTACAGTCAACCTGTTTATAGCGACCA CCCAAGGGAAACACAAAAAGTGGTCTTTGTAGACAGGTGGTCTTTATAGACAGGTGGTCACTAAAGCAGG TTTGACTTGTATATATATATATTTTTGTTAAAGAAGATTATATTCTGAGTCTAATAATGGCTGTCATGGT CATTCATACATTTTGTACTTTCATATATACTTTTACCCAATTGGAAAGTTTCTCTCTCTTTCTCTCTATC ATGATGTAAAATAAACAGATTCAACAAAACATTCAGTTTCATAGAGCATAGTTTATTCAATATCTTCTAC AAATATTTATTGCCTACAAGTTTAAACAAAAGATTTATTTGAATGTAAAGTACTCTTTTTTGGCAGCTCA AGGTATGTCTATATGAAATACATGTACTCACCTCTCAAAAGTTATTTGTACGTATGAAAGGGGGTTTCCG GATGCTAAAGAACAAAAATAAAGCTGTCACTTTTTGATTTAACGAAAAATATGAATCAAATAGCACTAAA CATCATCATAAATATTTGTAATTTATGATATAGTCCAACACGAGTGACAAAAATGATGAAATGTTGTATG TGACCTTCAAATTACTGTCAGAGGGAAAACACATCTGTCCAGACACAAACAATTTCACAGAGCTTATGTA ATGTATGTAACCTTTACATACTTGCGCCTTGTATTTTTAAGAGCTTTTTCTCTCTTTGCTTCCAGGATAT GGTATGAAATAACGTGTACCGGTATTACAAGAGAACAGACAGATTGGAAAGTAATAAAGTAATGAACTGA ATTATGAATACGCAATATAGTACGGTTACCTGATTGACTACAATCAGCCAGCAAATCAATTGAATTATTC AGATGGTGCCATATTTTAAATCCGTTCGAATTTGTTGTATTTCTACTTTACTATGCCATTACCTCTGAGT AGGTACATATATAAAAATAATGATCATAATAAATACATGTATATACATTATTTTTTTCTAACTTTGTTTA GAAGGCAGCTCATTCATTCTCCCCTTTTCACAGTGTACACATTAGCAATGTAAAAGTAGACTCGTAGTTA CATGACAAAGTATTGCAGAAATCTCTGAAATAATTCTAAAGCAAAGACATATCAAATGTGCTTTCTTTTA CACAGAAGACAAATCTTTTGAAAAAGTAGGTTAAAGGAAGGAAAAGTGACGATATTAGAGCGGAAACAGA ATTACTGAACATATGTAATTGTTGACATTTTGCAGAGGTGAAATGCTGCAAAACAATAAAGTAAGAGCCC TTTAAGGTCTGCTGTTTGGCTATTATCCGAGGAATGCCTGGCTGAATGATTATACACACAACTGAACAGA TTCCTATACTATGAAAATATTACACTATATGGAAGTGTAATAAATATTGAATAGTATGTTTATGTAGAAC ATAATATGCACAAAGAAGATGACAAATAAATTCTGATCCGTTTCTTGTGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds