Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041625512.1 PREDICTED: Lytechinus variegatus DNA polymerase epsilon subunit 3-like (LOC121428701), mRNA CATATCACATCTCTCCTTTTTCGTCAAAGCAGCTTTTAGTAAAAGTTCTAGTGAGTGATCGCAACCTATT ACTGAGCCATGGCAGAGCGACCTGAAGATCTGAACCTTCCACTTTCAGTCATCACAAGAATTATGAAAGA TGCAATTCCTGATGGTATTAGTGTTTCAAAGGAAGCAAGGAATGCGGTGTCAAAAGCTGCCAGTGTCTTT GTTCTTTATGCTACCTCTTGTGCAAACACTCATGCATTGAAGGGCAAACGGAAGACGTTGAATGCAACCG ATGTGTTTGCTGCATTGGATGACATGGAGTTCAGTGAGTTCATCGAACCTTTGAGGGCAAATTTAGAGGT TTTCCGAGCTAGTCTGAAGAACAAGAAAGAGGCATCGGAACAGAGGAAGAAGAACAAAGAAGATCAGGAC ACCAGCAAAGACGATGACGAAGGAGAAGAGGAAGATGAGGATGAGGAGGAGGATGACGAAGATGACATGG AGGATGAGGATGATGGCGATGATGATGAGGATGATGATGTCGCTGAGGTAGAAGCAGGGGGAGGTGAAGG AGCAGGAGAAGAACCGGTAACGGTCGAAGATGAAGAGGCTGAAAGTCCCGAGGTGGAGGAGATCGTTGAT AAATGAGTCTTGTGACAAAGACTATTCTTAAACTTAACTTTGACTATATTGAGAACGAGGCTTGCAGACA AACTTTGTTCCAGTTATGCTGTTAACCCAGACTCAAACCCACTTGCTAAACATGTGACTCTGCGAAGAGG AAGTACATGAATATCACCATGCATAAGTCAACCTCTTGTGAGTTAAAGCTGTTTGTGAGTCAGATATTCA CAAGTCCCCTTGTTTGAAGGGGAAAGTCCACTCTGTATGTCAAATTTGAATGTTAGAGGGATAGTTTTCC CTGACATCAGCTTGTTTGGAATAAAGCCAGAAAAATTCAATAGATATATCAATGAAAATGTGACAAAAAC CATGATAAAATATTGTGAAATTTTACATTAATATATTATTGTGACATAACTTGTTCGCCACTTTTCTTTC CTGTATATGACTCCTATGCATTCCTAGTTTTTACAGCAACCTTCTTCGACAAATGAATTTAAACAGACAT ATTGTTTCATACATGCTTCTTGGGAAAAGAAGAAAAAAATCCTTAGGTGAAATATGGACTTCAGGAATCA CAGTATACAGGGAACTGCTCACAAGTTACATCATAGAATAAAAGTGTCAACATTTCATGTCTCTGATTTT CTTAGATTTTCTTCGTTGTACTTTCTGCAAGATTTTTCACTTGGATTTCATTTCAATTAGACCCGCCTTC TTCAAGGTAACCGTCACCTAAAATCATTTCTTTATAATATTTATCACAAAGGGTCAAAATTTCATATCTC TGATAAGTATTTGTTGATGGATCTTTGCTCCACATTCAGCAAGATTTTACTGTTGGATTTCAATTAGATC CACCTTTGTTTAAGGTAACCACCTAAAATTGTTTCATTAAAATATTCATAAAAGTGTGAAAATTATTCTC TGGTGAATCACAGTATGCTCACAAATGACATGGAATAGAAGTGTCAAAATTTCAAATCTCAGATAAGTAT TGGTGGATCTTTGTTCCACTTTCAGCAAGATTTTTCAGTTGTTTTTCAATTCTGGGCCCTGTAACACATA ACTTAGTGATTGACTGTGGAGTTGATATTTACGATTGATCATACACAATAATCATACACAATAATCGATG CAATCGATCGCAGAAATCAGCCATATGATCAATCGCTAAGCTTCATGTTACTGGGCCCTGGTGATCTTCC CCATTTATAAGTTAACCAAACTATTTGCGGGATCATCTTAAATCTTGGTTTACCTATGCAATGGAGGGAC ATTGATCTGATTAGGGCCCTGTCTTACAAGGAGTTGCGATTGATCCAATCAACCTCAACTGAATGGAAAT CCATCAATGTCATACTTCTTTCCTCAGGAAATTTCCACAATGTCCTTTGTACACAAAGAAAAGTGCACTA AATTTTCAAGAAAATGACGAATGTGCAAAAGTACAGCATATCTAGAAAATATTTTAATTAAACACACATT TTAGATGTTGACATTGCTGACTTTCCATAGTTGTGGTAGATCAGGTCAACTCTAACTTTTTGTAAGATAG GGTCTAGGTTTGGGGTCAATGGTCAAAGGGAATAAATATGGCATGAGGTCAAGGATCGAGTGCATTTTCT GATGATATTGAAACCCATTGATCTTGCTTAATTTTCAAGAAAATGAATGTATGAATATACAGCATATCTG GAATATATTTTGAACATTCACATTCTTGATGAAATCTTTGTAAGTTGGGCCCAGTCTGGGTTTGGGGTCA TGAGGTCAGTGGTCATAGGGGAAAAATAGAGCATGGGTCAAGGATTGAGGCAGAGTACATTTGATCTAAT TGACAAAGATTCTTTTTTCTTTCCTATAAAATATTGAAAATCGTATCATCCCTGATGGATGTAAAATAAT AAGACAAAGAATAGATTACTGAGAGTTTGACAAAATAATCACCTTTTTTGTAAAACAGAGCTTAGATTCG CCAACTGCTTTAATCTTATCCTCTCTTGAATGTCAGTACTGACATTTGTCAGGTTATCTCAAATCAGTGC AAGAGACTAATCCTGTGTGTAATTTTTTATTCACTTCATATGTAAATTTGGTCTTATGAGAATAATAGCG ATTTTTTCATTCATATTCGAATGCAAGTAACTAAGTGCAGAGTTGTCTTGGATATTTTCTTTTAATTCAT AAGTTTGATTAATTGAGTTTTATCCATATTAGCTGATATTCTAAGATTTTACTCAAACCCATGATTAAGA GCCCACTTGATAAAGATTTATTTTTAAACAATTGTCACTATGAGTTATAGCTTATCATGGATATCTTGAT TTAATCAGCTGATGCGCCCTATGACCATGCTAGATACCTGTTACTCATGTCCAATTATTGCAATGGTAAT CACTGCTTGTATGTTTGGTTTAAAATGGGGGGGGGGGGTTAGGCTTGATTCTTCCTTTTACTATGACTCC CAATATCTAATAAAATGGCATCAATTTCCTACTCCACAAATTATTCATGTGATTCCCATTATCTTTGAAG AAAAAACAGCGTCAATTTCCTATCGTAAAAATTATTCTTGTGCATCATTTATATCATTGTACATAATTTG TTGTAATTTGAATTTTGTAAGATAACGAAAATGGTGGAATTATTGCATAAAATCCATAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds