Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT099822.1 TSA: Strongylocentrotus purpuratus WHL22.357767.3 mRNA sequence GGTTGGTCTAGCGCCATCTTGAGACAGATAATGAACAATATCCAGCAGGAGTTCGCGATAGCTACACCAA TTTTCTCTTTCTGGCTCAGGAAATTCACTTCAAACCATGTTTTTGTTATGGTTTGCTCAATTTGGAAAGG AAATCAGTTATTTGCTCATTTGATGACAACGTTCATAAATTATGTCGTCCGTTAAGAAATTGAGTTTGAG TGGCTTTAAGTCCACATTCAAGCGGAAATCAAGCCGAGGAATTTCAAGGAACAATGTCGAAACTACCGCA TCAAACGGAGAATTACAACACGGGAACGTTTGTGATAACGAAACTAGCAAAACAAACGACGAGTACCAGA ATATCCCGACCCAAAACGGGCCAGGTAATGTAAAAACGGAGGGAATTGTTCCCCCCAATAAAGATGAAAG TGGTCGGAAAACTCGGGGGATGAAAACAAGTCGATGGGGTTTTCGTCAAAAGACGGACGGCAGGAGCAAA ATCTGTGAAAATGGGAATGAGAAAATAACAACTTTACCCGATTGTGAACCCGGAAGTGGTGTTCATTTAG ATCACACTGCAGATGATGATTCTGCATTGCCAATGTGCAACCCACCGTCTGCAAATGGACATATTGTAAT CAATAATCAAAATATGAATGGCAATGAAACTGGATATATTGGTGCCAGATGTATTTCGAGTAGCCATTCA TTTCAAGAGGTAGACAATTCCAATCATCACTACATCAATGATGTGAAGTCCAAGAAAAATGAGAAGACGG AAGCTCTTCCGGATGAAAGTGGCACAGAGAATCAAGAAAGTGTCGGACAAGGACGCTACAATTTTCCATT GCCTGTGCCTAGTGAAAAACATTGTGATAATGAAGTTCGCAGTATCAATAGTACGAGGTGTGATGTAAAC GATAATGCTGAAATATTTGAAGAACGACTCGATGAGTGCCTAGAAAATGATGTTCCATGTATGAAGGATG ATGAAAGTGTTCCATCTGAAGAAGACCGACCAGCCATTCCACCTAAGCCTGCATCCCTCTACTGTAATGG TCAATGGCAATTGCAGGGTGCGGACTCTGTTCGGTCCAAAAATATGAAGAATTCAACCATATCACTTGGT GAAGAACAAGACTTACCTCCCCGACCCCCTGCACGTTCAAAAACAAGACATGGCGTAGACATGAATCTGC CATTTTACAAGCAGTACTTAGAACAGAAAGAGAGAAGCGGCAGCCAGACAGTACCAATATACGAGGATGT GAGGGTAGAGCTTGGTTTCGAGAGTGGTGGTCTTGCAGGAGAGTTGTCCAAGCTGCCTCGTCAGCCTTGG TACTGGGGTCCAATGAGTCAAGATGAAGCGGAAGGAAAGCTGGATGATGCAGATGATGGCAGTTTTCTAG TCAGGGACAGCTCAGATGACAGGTATCTTCTAACGTTGAGCTTCAAGTCTAATGGTCGTACCCTACACAC AAGGATTGAACATCGTAATGGTCTCTTCAGTCTGAATGATTCTGAAGGTCATGCCTCTGTCATTGAGCTT ATAGAGAATGCAGTCAAGGAGTCACAGGGTGGTGTCTTTGGTTACATGAATGACTCCACTGGAATCCAGA ACTTCCCCGCCAGACTGACGCAGTGGGTATCCAGATACAGCGAGGTCAAGTCACTCCAGTACCTCTGTCG CTTTGTGATACGGGAAACCTACCCCAGACATCACATTCGTCATCTTCCACTTCCTAAGAAGATCAATGAG TATATCCTAGAAAATCAGTACTAAGCACAAATTTGTTTACTAATTAATATTTTTGAATCATGAATTGAAA TGCAGAATTATTCCAAAGATGTCTCGAGTGCATTTATCTTTTATATATATGCCATTTTTGTATCAACAGC AAACTGTGTAATGTATGTACACTGTACATGTTGTGCATGTGTAATAGACAATATTAATTGATGACAGTAT ACACATGTAGTTTCTAGTTAAATGTACATTAGACTCTCTAGACATCCATAGTTTAGAGAAGTTGAAAAAC CTTTGAGTTTGTAATGAACGTTAAAGAAATTATAACCGCCTTTTTTAGTTATGCCTGTATCATTAGCGTG ACTACAAAGCCAATCAATTTAGATTATATACTCATTATCTTAAGGTGAAGTGGGAATTTTTTAGGATGCA ATTTCTTTTCAAATCTATGGAATTTTCTTTTGATATTGTAAAATATCCTGATGTTCTCATCAGGAGTTGG TTGGATTAGAGGCCTTTAAATCAATTCTGAAATAAACCTTGTTGCCTTTTAGGAGCATGCAGCCCCCCCC CCCCATTCCTGCCCAGACTTCTAGCAATGGTGCTCAATGTTACCTCTCTATTACCTCCCCTTAATCTTCC TTCTGTGCTTCCAGTACTATCCAGAACAAACAAAAATCCTGATAAGTGCCTTAACAGTCTTTGTAGTTTT TTAAAGAATTAAAGATCAATACTCATGGATAATTTGGTATAATGTATAGAATGACCAAAATGACAGAGAA TAGTTTCTTATGTTAATCTATCAAGAGATAAATAAGTTTCTTGAAGGCCTACAATTTGTTTCATTCTTTG CAGGTTATTACTAGTAGAATGCTCCTTTTCCTGGTTCCAGTACCGTTGTTTTATGAATTTATATCACAGT ACTCGAAGCTTTTATTTCATTTAGATATATGCCATGTTTATTCAGCCCACCTCAGTTGGATAGGAAAGCA CAATTTAGTGTTTTTAGTTTTTACCAAGTTGCATGATCATGTTCGTGGTGTCTTAATTTGCTTACCATTT TTTTTAATGCAACTTGGAAGCTGAACAAATTTTATATTGTAAGAGTACTGGTAATGCAATTGTTTATAAA TTTATATCATACTTGAAAAAGTGAAATTTCAAATTTATCTTATAATCCTTTTTTTTGCATACTAGCAGTA CATGTACATGTATACCATTTTGTCTAGATTTGTACAGTTTTCTTAGTTTTTCTAGCCTGCCGAGCTACTA GAATATAGATGTAAAGTCGTTCTCGCAGTATGTATTTTGGTCATGTATGGGGTATATTTAGTACAAAACT TGAGATTGTTTCACTCTTTAGCGGCTTTGCCTTCTCATACATATAAAAAATACCACTTAACTTTTGTGTC TAGCTGTCTAAAGCTCAAGCTTTTGTTTCTTGACAATTAATTTTTATGTTTCCTCTCCCTTTCTCCTTCT TTGTAACAATTTTACATTCCATCTTTTTTGTGTTCAAACAATTAATTGTTGCTGAAATGCTGTAAAATCT CAGTATCTTGATATGTCCACTTATAATTGTGCCTTACATAATTTCAATTAATTAACTAATATGTAATCAA TGGACCTCCAATCCATGTAAAGATGATTGTATGTTATACCTCCATGCCTTTCATCCGTCTCAGTACATGC GTCTTACTTGTGCTATTGTGCTTCACAATCCATCCTTGAGTTGATTGAAACGTAGATTAAAACTTAGATT TAAACGTTGATTTAAACATTGATTGAAACGTTGATTTAAACATTGATTGAAACATTGATTGAAACGTTGA TTTAAACATTGATTGAAACATTCATTGAAACATACATGTATGACAGGACCTCTTGTCGGGGCTCCATGCT AAGCTTTTTTTAAGGGAGTTCAGATTTAATGTGTCATTGTCTCTATACATAAGCCCTTTGTAATTTTTTT TGTTGTTGAAATTTAGGGGGTCCAGAGACTCCAGACTTATATTTTGGGCACCCATGTGTCCCTGGCGCCT GTTAGTGTCAAGCACTCTTAATCTTTCTTTAAATGTTTCAGGATGAAAAAAGTCCTTATAGCCAAAGAGT TACCACTTTGGATATCTGCACCTTATTGCTCATAGCTGGTGTTAATTGTGAAACCAATCTGAACACATTG TGTGATGCCTAACTTGTTGCATATTTTAAAGCAAATTAACTTTGAGAACATACTGTAGGAAAACAATTGG GTCAATGTTTGTAAGAGATCATTCATGTATCTTGACCAATTTCTCTCATGAATTGAGTTTAAAAGAGGAG ATTAACTGCAATCGAAGATGTATATTTTTAGAGATCTGGGGGGTGTTTCACAAATCTTGTCACACATGTA AGTTACAACTTACATTTTTGTTATAAGCTACTGAAATCCTTGCTTCTGATTGGTTATTAGCAGATTTTTC ACTGATTTTTGTCATTTGTCATTGATAAAGGCTTTGAGAAACGGGTCCCTTGGCATTGCTTCATTAAAAC GAAACCAGTCCAACAACATCCCATTAAAACCCATGTTAATTACAACAGGCATGTTTTAATGGGATTTTGG TGAGCTTTTACTTTGTTTTGTGATACACTGCCCGGACACTCTTGCAGATATCTCAAACTGCTTGCATACA TATATCCCAAACTGCTTGCATGAGATCTACACACAGACCATGATGCAGATAGTGCATTGTCCTTTGTACA AGTTCTTGGAAACATCAATCTAAGAGGATGTGGTTTATTTTTATTGAGTTTCTAAAAGTCAAATCATGAT GAGGCCCATGGTCATACGTAGGTACTGTAATATGTAATATTACTCATTGATGCCATTGAAACAAGTCCAT TGCACTGTTTGTTTTGAATGGCTGCCCAAGCATATTCTCTTCTCCTCTCCACATGTGATATATACATTGT ACATGTAAGCATATGCAGTAGATACATGCAGAATAACATATAAACTTGTACACGTCATGTCAGCAAACAG AAGTAGACAATGTCGTACAAGGTCTATTTCCTGTATGTATTTGTGTACGCACTGTCAATAGCGGGTAGGC TTATATAAAGTTTTCTGCATGTATTGCTTGTAATGCACATAAATGTGCACATTCATTTACATACATGTAG TACATGCATTTTCTCTATTATTTGCTCAGCGCCAAAAGCTAAAGGTATGCAGTGTTATATCCTTCATTAT TTTACGCTTTATAAGGATTTGCCTCTTACAATTACAGAATGTATGTAGCACAATTACATATGTCAAATAT TTGATCTCTGGAACTCTTGTTTTTTTAATATTTTTTAAGTTGCCCCATCGCCTGATAAATTAATTGCGTT ATGGCTGAATTGATTACTGTGAATAGACATAAGATTCAATTTATGTTGATTTGGAATTCCCAACCCGGGA GAGTAGAATGTTTGTTGATTCAGATAGATAATGTGACCTAGGGTACATACTCTTGGAGCCTTCACCAGCT CATTGAGAGAGAAAATACTGATCTACATTTCATTTTAGGGAGGATGAAAAACCTTTGATCCTAATTTAAA AAAAAAGAGGAAATACATGTTTATTGCTTGCAAATATTTCATCTTTTTTTGCAGCAACGGACTGACATTT GAAACAAGTGATTGAGAAAAGATAATTTTGGAATTCAACGATCGTTCGTTAGTTACCAATGAAAATTAAT TGAGGGAAAAATTTGGATTTGGATACTTTAAAGGTTCAATAATGTACTGCAAGTTATTTAAAAAAAAAAT ACATTTACCGGTATCGAAAGTTAAGAGGAGAGCATGGTATCTTCCTTCCTGTCATGTACATAGCTTGTGA TTTCCTATTAGACTTTATAACGCGACCACACCTACTTCACAACTTCCTCTAAAGCCCTTCCTAATCACAT AAAGGGAGTAAACTACATTTTCTGTTGCAAAATAACCACCACCTGTATTTATCATGCCAATGTTGTATGG TTAAAAATCACTTCTCCACCGGGCCTTATGGGGCATGTGCCCACCAATTTGTATTTTGTAGAATACTGAT TGTGTGATCGATGCAGTTTACCCCTAATCATTTTCACTTTCTTTTCTTCTTTTTACTTCCCTTTAAATGA TTTTTACTTCCTTTTTGTAATATTTTTCACTTCCTTTTTGTAATATTTTCACTTCCCTTTTTACTATATT TAAACAAAATTAAATGCTGTTTACATCCCCATATGGGAACACGACTTTAAAGGTAAAATAAGTCACCTGG TCACTTTGTTGGCTCATTGCCTTATTCTATGTAGTATCAAAGTTAGGTACATATCAATTGCCAGTCATTT TGCACTGTGTTTATGGTTCGAGTTGAATACTAACATTGAAGGGAGCCAGTTCCCTGTGGTAACATAATGT ATATATTGTTAGAACAAAGATCACCCCGAACCTACTGTAAGACTGTAGAAAAAAAGATGATGAAAATATG GAGACAAAATATTTAATATCAGTGATTATGGGCATGAAAGTATAAAGATTTTACTTCCTAAATTAAGCAT GCATAAATTATATTGAAGCCTCAGTGTTTGTAGTAATGGGTCACTTCAACCTTTATTTGGAATGTTAGTA ATACATACCAGTATTTACAGAAATATTACCTGTAATCTAAGCTGATATTTCATAGAATTGATAGAAATAT ACAGGCATGGAGCCCCAGACTTTGAGAGCAAAATATTTTGGATGTTTAGTCCCTTTAATGTATAGCCCTT GAATTGTGAGCACAACCACTGTCTGTTCATTGTACCAAAATGGAGTCTGGATTTGGAAAATAACATTATA GAGAGCACTTTGAAATGTCATTTTATAATGAAATATCTAGCCTTGGGAACTGTACATACACATATGTGGC CTATTGTTATTACCACAATGCAAAGATGGTATTTAGTTTTCAGTTGAAATGATGACTCTGTGATATTTGA TCAAGTACTAAACCACATTGTTTATATGTTTTTGACAAGTCCAATATCAGGAACTAGATCAGAATATGCC CTTGAGTAACATTTCTTGTGATAAAGGATGTTTACCTGGGGGGGGGGGGGCTANAAAATTTAGCCCCTAA AACACTTCTGCTTTTGAGAAAAATTGAATATAAAAATTTACCGATGCTCCCGGTAAATTTTGATAAATTT CAAATTGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds