Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110215.1 TSA: Strongylocentrotus purpuratus WHL22.36591.0 mRNA sequence GGAAACTATACATTGACGAAGTTTGTTAAGCTGAAGCTAGGCCCCAATCGTTAGCGCTGAAACGTGTTAT TCAATCACGTTAGTGCGTGTAAAGATGTCGTCCTCCAAGAGTTGTCTCGTTCTTTGCGTTGTGTTGTCGA TGTTGCTGAGCGTTGCTCATCTTCAAGATGTTGACGAGTCGGAGGTTGAATGAGATGGTTGATGAGAATG AGGATGACTCCGCCGAGGTTGACGTCAAACCCAAGTATCTCACAAAGGATGAATTCAACATGTTGGTCGA ATCAGGAGACCGCTTTGTCGTGAATTTCGTGAGCCCTGGATGTATTAAGTGCAATGAGTTTGCCCCTGAA TATGAAGAAGTGGCTCTGCATTTTGCTACAGAGAGAGCAGATATGAACATCAAAGTGTTTATAGAAGGTG ACCTACAAACCATTAGGAAGCAAGGGCTGCGAAGGCTTCCATCTCTTTACTATGTCAGAGACAAAACACC CCTCCTTTACACTGGTGAAATGGATGCTCAGTCCATTATTCACTTTGTGGAGGTTACAGGAAGAAGGATC CATATACCACTGTCAGATGATGACTTTGAAAGGAGAACTCAAGTCTCTACTGGTGCTACCACAGGAGACT GGTTTGTCCTCTTTTGTGATGTACAGCATGTTGACTGCTCTGTTCTTCTGCCAATGTGGGAGAATATTGC TTATAGGTTACATTCGCTGATCAATGTTGCAGTAGTGGATATTCCAAAGAACCCTAAAACTGCCAAGCGA TTCCAGCTATCTGGGTCTCCTGCGATGCATCTATTTAGGAAAGGGAAGCAGTACGTCTACACCCTTCAAA TGCGGGATGATTCAACCGTTGTTCAATTTGCACAGAATGGCTACAAGCGGTTTCCTGGCGTCGATGTACT GCCAGAGCAATCACCATTTGATACTCTGACAGAGAATATTGCAGATCAGCTAAAGGAAGTTCTCCCTGAG TCACATTCTTCCAAGCTGATTGTCATCGGCCTTCCTGTGGTCGTCGTCCTTCTCATCATCGTCTTCATCT CGAGACGTCGAGCATCTGATATCCTTCCTGGAAGAACAAAGAAAGGAGTTTGATTTTTTTTTCCATTTCA CTTTTTTTCTTCTTTCGTTTAGATGTATTGCATGTGGTATTTATTGTACTATCATTCCTAGGTATTTGTA GAATTCAGTATTGTAGGCTGACGTACCGTGTGTGCAAAATGTTTGCTGTAAACAACTATTATTTTACAGA CACAAATTATGACGTATGACTTTAAGTAACCATAGTAACATTTAACATTACTGCTACCCATATTGGATAT AACACCGAGAGAATATGTGCCAAGCATAGTGGGGTTTATATTTTAGAATATTTCAGTGAATGTATCACAG TCTATAAACTAAAAAAAATAGGTTATATCTTTAGTAGGATCAATTCTAGTAGACACTTTTATTTATTATT TTTTGGTGTAGTATTACATGTGATCTTTATCATCTCTTTATGATCGCTTTTCCTGTTGATTTCTTTAGTC TTCCACTACCAGATATTCTGTATAAAAATGCACAATGTCTAGGTTGTGTAGTTATGGTTGATGTTAACAT CTAATATAAAAATAATTTCTGCTTTTTCAATTTATTTAACAAAAGGGCTGTTACATTGGGGTATACATAT ATATCCAGAGGCCATTTATTATGCTGTTTCTCTTCTTACTTTTTTTGCTGATTACATACTTTGATATGCT TTAATGCATATGCATAGATGTAATAATTCTATTTGAAGTGCCTTATTCATGCCTTAATCAGTACATGTAT TCTGAATTTTGTTTCGAATCTAGATTCTGAACATTTTCTTTGTTACAGAATTTGATAAAAGTTACAAAAT ACTGCAAAGACTACAAGTGAAATGTTATTGATTCAATCTATCCCTAAAAGAAGATTTTACAAGTTAGCAT CTATTGAAAATGAGGAGAGTATAAATTATGCATAATATTAAACATTATATTCCACATACTAAGAATCTTG CTCTACGATTGGTCAAAAGTAAATCAAGTGATGAAAGATAGTTTGCCCATCATTGATGGAGAAGAAAAGT TTTTTACACTGTGTAGATAGTACTACTATCTTCAGTGAAAGTGCATTGCACTCGGTAGATAGTATTAATA TCTACTCAGTGCAACACACTTTAATTGTAAACGTTGCATATTAGTGTTAGTATGCGAACTTTGGTCACGC GCAAACAATGGTCACACCATACTGCATGCACTTTACGTATTGTACACCATTTGCTAGCTGTTAATTGATG ACTTGTTATAAAATGACTGAAGAAGTGAAATGTTTCCGATGTGAAATATAAAGCAAACAATCATCTTTTG GTTTCAGGCGATGGCAAATTATCACTTCCTCGGCGATTCGAATGTATACGCTAAGATAGATACATCCATA TCGCCTCGGAAGTGATAGTTTGTCCAATCACCTTCACCAACGGTAATTATTTGCTTACTAGTGCGTTTTG ACCTTCAGAAGAGTTAATTGTTGCAATCGTACCACTTGTGCTATAACTGCCAATCTTTTAAATCCCTCAT TTGTACTTTCTGAAGAAACTTTCTGAAGAAACTTTTGTCCTTGTTGTGTGGTGGCCCAAGCAAGTTGCTA TGAGTTCACAAATTTCTCTGTAAAGTAAGAGAAACGATACAATAATCTAGCTATGTGATAGCATTGTGTG AAATATACAAACTAATGTTCGACTCCTTTTGTTTCTTTGAATGGGATGGATAATGACTAAACTGCATTGC ATCTTTTCTGTAAGCCATGGGAGATATAATCTGGCATTCACAATGAACAGTTATACCGCCCTCTTTGATA TAGTATCACAAATGATGTAAATCAAGACCTGACGTGTAATGTATACAAATACATGAATACTGGTGGCTGT GTTACACAGAGGAGAGCACAGTTATTGATGGAAGGTATGTATCAACAGAATCAGGAATGTTGAGAGAGAA ATCATGTGAAAAATAACTGAAAATAAAAAAAATTGAAGAAAGAATGGTCAAAAGTTTCCTCAAAGGCCTA AAGAAGGCATGATATTAATTCAAAGTGAAATAAAATTTCAATTTATTACTTTATACTCTATATATATTCT ACATATTACTAAATATGGCAACTAAACACTTTCTTACAGAAGGTAAGAATGATGGGGTAGAATACTATTT TAAATCAATCGGCTATGGTACTGTAGTATGTTCAACTACTTTTATTTCAAATCTAGGCTGAAATATTAAT TCATACAGCTTGGTTTGTAGTTAAGACACTTGAATTGCGGAAATTGATTTCAAATATGCCTCCTTCAAAC ATGGTTGATCTTCAGGGTAGAATGCTTTATAATACTTGTATACTTGCTAACATTGGTGTCCGTAACACAA TCTAACAGACTTTTGAGAAATCAATTCAAGGGTAATTTCAATAGCCTATTTGTATATCTAGTAATAATTA GTTTGCAGCACAGACTCTCACTTGACACTTAACCATGATCCCTATAGCCTTGAGCAGAGCCTAGATGTGT CGGTGTGTGGCTGTGATAAATGAGCAGCGGCTCAAGTACAAGCGCCTATTGTAGGCTCATAGTGCAGACA CTGTTACGCAAATAACTACCAAGGGTGGTTTGTGCATGCACACTGTGTAGAAACCTTGTTCAGATGATGT ATTATGACTCTATCGTAATGTTTGCACTTTTCACAAGGTGATGGATAAGGTTATTGAAATAGTCTTTGTT TTCATATCCCATTCTGAATAAAAACAATCACGATTCAATGTGAAACATATCGTAGATAAATCGAGATATG GTTAGTAAGTGCCCTTTATATCTTTGTTACGAATGATAAAAACACTTTTCTTGTGATGGATCTTGAAAAC CTTGTTGATGAAATTGTGTACTTTGCAAGTAATTAGCAATCTATTTAAAGTGGTTTAAAGAGATATTGTT GTCTTTTTTACTTGAAATTGTGGAAATTCTGAGTAAGTGTACAATGTTTTCTTGAGATATGGACCTCATG TAAATGTTGATTTCAGGGATGTGTAAGTGCCAAGCGAGAAATGCTGCATCATAATATACTGATTTATGGG TTGCATAAAGGTAATATCTCAAAGAAAAAGAAACTTAATATGTGCCAAATGTAGGGTTTGTTTTTAAATC ATAAATCTTAATGGAATTTCAACAGACATTCTATTTGGTAAATTATGGACTAACATTTCAATGTCTTAGA GCTTGCTAAAATGATTACAAAAAATAATATTTTAAAAGGGGTAGAATTGATCAAATTGGAATGAAATGAG AGTGTTTCTACTGACTTGATGCAACATACCAGCTTCAATTAAAAGAAGAGCTGCTATTTACATTTCCTAC TTATATTTTTTTTTTAGACAAAGTTACACTTGCACTAGAGACATGTTTACTTCTATCCATGAAGTTTTAC CATTGCTAATATCGATGACATTTATAAAGAAATTTGTTGGATGATATCTTTTAGCAAAGGTGGAAGAGAA TAGAGCTAGTATATTAGCATTATTGATAATACAGTTCATTTGAACTTTTTTTTAATTTGTTCCATCCTAA TGATGAATGTTGAATATCGCGCTATACGATTATCTCATGAACATGAATTGAATGAAACAAATGGAAAGAA TACAGGTTATCAAACATGTAATCAGTAAAAAGGCATGTGTATAATTAAAACATATTACTTATGGCAGGTT AATGTTAAAGCAGACAATTGAGGGATGTTTTTAAAAATGTTATTCATATTCCTTGAATTGTTCAATTATG ATGATTTTACATTTCCTCAAAAAGAGTCCTTTGAGAAAAAAATTGACGTCGCCAAGCATTAATAACTATT ATATACTAAAGATGTGTTTGTACTAATCATAAACTGGTGGCATTCATTGAAAAATTAGAAATTAAATTAG ATTTGATCATCAAGAACTTGTCAGATTTTGTGCAATATGATGTCCCGGCAAGCATGGAATTAAATTCACA TCGATGATGATTGATTTCACAAGTCAATATAAGTGTATACAGAAGAGTTATTTTTGTATTGCTAGCTATA TAATAACTTAGATTCACCCATCCTCATTTGTTGAAATCATCTACCTCTACATGTGTTTTCTTTGGTTCGC TTTATCTTTTGCTTTTCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds