Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
Login
Register
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
Antibodies
Morpholinos
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
BLAST
Download BLAST databases
Blast program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030978516.1 PREDICTED: Strongylocentrotus purpuratus delta-like protein 1 (LOC115921237), mRNA AGTCGGGGTTATTAAACAAAAAGCAGTCCTCACGAACAGTCAAACTTTTGATATACTTGGAACTTACGAA GCCAGCATTTCGCAACAAGTGATACGACATTATACCTGGATTTACAATCTGACAGTCGGATTATACACAC GTGCATCCTTCTCGGCGATGATAAAGTAATTTTCGCGAGTTTTCATCAATTTCTACATTTATATCGTATG GATGAGCAACATTTTAGTTAGATATATATTTCGAATATATTTTTTATTTGAGTTGGAGTATATACACAGT ACTGTCAAATTTGACATTATACTTGTGCAACATGAGAACTTGGCATCAGTGACAAAAGTAGATTGCCGCC CTCTCTCGTGATTATTTGTTCAGTTCTATATCCTCGAAACCAAGGCACGCGTGTGGGCGCTCTGATTGGT CGGCTTGTCCACACTTATGGGCGGGGCGTAGTAAACGCATAGAGAGAGCCCGAAAATGACAAAGAGAGCA AACGGAGCAAGCTAAGTTGATCAAAGCTCGCAGACTTGAGAGGACTGATAAGAAAGGAATAACGGATCGG CCGCACTGCCTTCTTGGCGTGCTATGTTTTTTGGAACTATGGGGCGTTTTAACTGGAGTAATACAGTGAT TTTTGCTCTGCAATGGATTAGCATTATTTCCAAGGTCACAACAGCTGCAGGGACATTCGAACTTCGCCTC AACTCCTTTTCCAACGACCAAGCCAAGGATATCAATGGACAATGTTGTGGGAATAATACAAGTACTGATC AGTGTGTCGGACCATGTAGAACATATTTCACAGTGTGCTTGCTCCATTTTCTTCGCGAAATTCCCGAGGA ACCCTTGCCAGGACAATGCACATTTGCTTTCCGGAATACATCAGTTTTGGGAGAAAATTCTTTCGAAGTT CATGATGGATTAATACAAATTGATTTTGATATCGACTGGCCGCGTGATTTTTCACTCGCCCTAGATGCCT GGCATGACGAGAGCAGCACAGGGTTCAAAGATGGAAACCGAAGGCGCCTTGAAACCCTGCGAATCCATAG ATCGTTGAACGTCAGCACGACCTGGTCCAACTATACTTACCCGACGTCGTTGCACACGCTGGACTACTCC TACAGGGTGGTGTGCGCTGAAACCTACTACGGGTCCCAGTGTCGAGACGCCTGTATCCCGAAAGATGACC TCTTTGGGCATTACCTGTGCGATAAAGATGGTGGGAGAGTCTGCATGGACGGATGGGAAGGCAACTGGTG CGAACATGCCGTTTGTTCAGAAGGATGTGTGCATGGTTCCTGCGACTCACCTAACTCCTGCAGGTGCGAT AATGGATACAAAGGAACAGCATGTGACCAATGCGAGACCTACGCTGGCTGTGAGCAAGGGACTTGTACCG TACCAGGGGAGTGCGTCTGCAATGTAGGCTGGGGAGGACTCCTATGCGAAAGAGATCTGAACTACTGCAC CAACCAGCATCCATGCATGAATGGTGGAACGTGTCGCAATGAAGGACCCCTGGGCTTCCAATGCTACTGT CTACCTAGCTTCACTGGACACACCTGTGAGACAGCAGAGACTTGCCCTTGCCTCAATGGAGGTACTTGCA GGAGTGGTTCTGATGGCTACACGTGCCTCTGTCCTGGTGGTTACACTGGGGATTTATGCCAGACGCAGGT TCCTCGATGTGACTCCAACATGTGCATGAATGGCAGCACATGTTCTGAAACATTCGATGGCTACCGTTGT GCCTGTCAAGAGGGTTACACCGGCACTCACTGCGAGATCCGTGACCACTGCTCTTCATCGCCTTGCCGCA ACGGAGCTACATGCCTGAACAACAACGTGGCCTACCAATGCAGATGTCCAGATGGCTTCCGTGGAGATCG ATGTGAGGAGAACCTCTGCGCAACACATGGATGTGAAAACGGTGGTACCTGCCGCGCGGAATCTGATTCG GTCCATTGTGAATGTCCTCGAGGATTTAACGGTGATCACTGCCAGAACAACGTCAACGACTGCGTCGCGT CACCATGCAAGAACGGTGGAGTTTGCTTCGATTTGGTGAATGACTACCGTTGTGAATGTGCCTTCGGATT CGGCGGACCCAACTGTAGCGATCATTTCACTGTTTGTGATGGAGACAATCCTTGTGAAAATGGAGGAACC TGTCTGCAAGATGTAATGGGAGGATTCATGTGCGAGTGTGCTGAAGGATGGATAGGTACAACATGTACGC AATCGACTGGTAAAGAGCAAACACCGAAGCCTTCTACAGACTGGCAGCGTGGTTCCCAACAGCCTAACCT CCGTGCTACCAGTTCACCCATCACCAACTTTGGATTATCGGATACCATGCAGCTGGCTATCTACGTTGCT TTTGGATTATTGGTCATTGTGCTCGTCATTATACTGATTATTGTAGTGTACAGGAAACAACATCACCCTG ATCCAAGACAAAACGACCTGGAATCAAATACGACATCGACACCAAATAACAGGAATAGGCACACATATAA AGACAATTTTTCGCAAGAGGAAAAAGTACTGCCTCTCTTGAGCATAAGTGAAAAAGTGTGCAACAAAGAG CAGGACACATATAGCAAAGCGTCGCAAAATACGTCGTCAGCTTTGCAACAAAAAAAAACAAATCATTACT CAATTAAAGAGTATGAAGGGCCGCCGCCTTCAGTGAACAAATTGATGATTATTCCAACGTCATCAAGTAT GAACTATGCGCCACAAGCAAGACAATCTTTTCCGAGATATGACTCTGAAGAATATTATTATTATGATGAA AAATCAGTGCAACTTAAGAGAACAGACTCATTGCAAACGCCTAGTCAAAGTTCTTCATCTCAGAGTACGC CTAGACACACAGGGACGTGCCCCATCTCACAAATATCGGCTGTGGTCGAGGATAGTAGGGGAACGACAAC GTCGACGTCTGTCGGATTACACGCAACTGAGGTATGAGACAAGAAGAGGGGGAAGATGTTGCAATATTAT TTTCTTCATGCGCTATGTATTCAACGCTATCACCCACTGCCATGGAACAGCGCCGCTCATAGGTGGATAC CCAACGAGAGAAAGAGAGAAGGAGAGACTTAATAAATAAAATGGAGGGCGCCGAACTAATTGATCTAAAT AAATATCTTTTAAGAAAAATTATCGCCACCAAATTCTATGCACCGTTTAATCTTTCATGCCATACCAGGT TATCTGGTTGAAGCAGCTCTCATATCCATTTGTCTACAATGTTTTGGAGATAAAAAGCCGTTGTGTGCCT TTTTGGAAAGATAACAAGACTTATGATAAAAGAATTTAAATTATTGTGTTCTTTTACACGCAGCAATATT TAAATGATTGTTATTGTTATCTGTAATTTGCAATCGACAATTTAATCATGATTATTCATATTCGAAGATC CAATAAACCAGGCGCTCACCAATATACCATATCCCAAATCATATACGAAACCAGGGGAAGGAGAAGA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
