Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041620444.1 PREDICTED: Lytechinus variegatus 4-hydroxyphenylpyruvate dioxygenase-like protein (LOC121424696), mRNA TGGATGTTATCTAATTGAGATACTTGAGGGAGTTTGTCGGTGAAGAGGCGTAGATGGCGCTAATGATTTA CGGTATTACGAAATCTCAGAAATTATTTCATGAAGATGGCAGCCTCCTGTGTCCATCATGTGCAATTAGC TGTGAGAAACGGGTCCCGATATGTGCATAAATTGATATCAAATGTCAATTTTAAGCTATTTGCAGAGAGG AGAGATGTGGACAGCACTGACTGGGTGCTCAGAAGTGGGTCATCTATATTTGTAGTGAGTGAACATCGAG CTGAAGTCTTACGGAACCCGGCATCGCAAGTTCCCCGGAACTCCGGGCGAGATGATTGCTCCGCCAACCC GCTGACGTCACCCACCATGACACCTGCATTTTCTACACGGCTTTCAGAAGTTCATCATCTAGGATACGTA TCACCACCTATTTCAACTCATAATCTGCGTTTAGAATTGCCATCTAGTGCTCTTGGAAATATAGATACAG TTTGCAATGTCGCTTTTGAAGTGTGTAATGTTTCTGCAACAGTAGAACTTGCGCAGAAAGGAGGCGCTAA AGTTTTGCTAGAACCAACGTTAATCAAAGACTCAAGTGGATATGTGACTGTTGCTGCAATCAAATCTTGT GTTGGGAATGTGGTACATACAATTCTAAATACAGAACATTATGATGGTGTATTTTTACCTGGATTTAGTA AAGTATCGGATTTGGATTTGTGCAATAATTCCATTTCATCACACAACATTTGCGATGACTCTCCACAAAG TTGTCAGTCAGACATTGATGATCATGTAAAGCCTGAATCAAAGGAAACCGTAACACATTTTGATCATGTT ACATTTGCCATTCCAACGGGATCTTCAAATAAAGTTCTAGATTGGTATGAAAAATGTTTTGGGATGAGGA GATTTTGGTTGGATAGAAACGAAGACAAGTTAGAAGGATTCCTGGTTCGAGGGAGCAATGTAGGTCTGCG GATGAAGGCCATGGAATACTGGAGGTGTGCAGAAACTGGTTTGGTTTTCTCTGAGAAGTCTAGCAATGAG AGAAGGAATCACAGACAAGGAACAAACATGATGTTTGTTGTAGCTGAGGCTCTACCAGAACAAGGACCTA ATCAAGTTGAGACGTTCATACAGCAGCATGGTGGGCCTGGCGTTCAACACATTGGTCTCTATGCACCTGA TATCGAGTACACAGTGGCCTTACTGAAGGAGCGAGGTTTGGACTTCATGGTTCCTCCAAGCACTTACTAC ACTGAGGTTGGAAAGCTGGAGGAGATGAAAGTGGTAGGGAAGGATCCATCCGCCCTCAAGGAACTTGGCA TCTTACTTGATGCAGAAGATTTCCAAGACTACATAGATGATGATGCCCAGGATAGATTGGATTTGGAGGA CCCTAAAATCAGGTATCTAATGCAAGTGTTCACACGGCCCTTCTTTGATCGAGATACATTCTTCCTGGAG GTGATCCAGAGGCAGGGAGCTTGTGGGTTCGGCGCAGGCAATATAAAAGCTCTCTGGAGATCCGTTGAGG CTTACATGGTGCAGAAAGAGGCTTCGGAGAAGGAGGCCCAGGAGGAGCCTTCCGAGAAGGAGCCAGAAAA ATCAAACGAGTACTTACATTACTAGGCTTCAAGGCTCTTTGATCAGATATTATTTTTGGATGATAATATA CAATGCATGTGCGAATGAGGATTGATTGGAAATAAATTCCATTTTGATTTTCGGTACTGTTGTTGTGTTT GATCAACAACCTTGCCACTAATGTTAACCGAGACTAGAGCTTGCAATTTTCAAGATTTTATGATGTAGAA TTCCTTCAGAGTTTGCTTTACTAAATTATGTAGGTGGTCAAAAATCAATGTGAATTACTGAGCTCATGCT TGTTTGTCATATGATAATTTTCTATGTGATTATTTATTTCCCTTCTGATTGATATGACTGATCAATAATT AATAAAAAAAATTCTTTGGCAGTTGCCTTCATTCGCAATTTTTTAAACCTCTTCCCCATATAAAGGGTAT TTGCAATTTTCTCTAATGTTTGCAAGATTTTATGATCACTCATTTTTCAAATACAATTTACTGGAATGAA TTAGATGTCATTGATGCAGCTCAGTGTCATATGTATGAAATTGTTTTATTCATAATAAAAAAGTATTTAG TTTAACTCTTTTTACTTAGATCACATCATTAGTTTCAACTCTGATAAAAAAATAATTTATTTGTTGTATA TTTCCTGGCTCTTTGGTAGGTTCAGATTTGTCTTCCCACTAAATATGCAAGGTTTATGTAATCTAAATTA AATGAAATGTAATGATTTTTTATTTCACTTGGTCATATTTCCTGAAGATGTTTTTACTATTGATGGATTG AGATTACATTTCATTATGTTGCAAATGGTGCTGTTATGTCTTCACATTTGAAGGAAAAATTCTATCTCCA GTGTTTGCTACGTATTCGATTTTCCCATGAAAATTTGGCATGGTGAAAATTCAACTGAATCAGCTGTGCT CTGAATATGTCCATGTCTAATCTTGGACTTGTATCAAAAGTTTTGATATGGAAACAGAAATAAAATATTT TCTTCTCTCCCTATTTTGAGCCAAGCAAAAGTGGTATTTTTCTGAAATGTCTCTTTCTTGAAAGTTTTGC TGCATCCATAGTCTATATTTATTTCATCATTCATGAATATCCAGTTTCATTTTGCAATATTCAGTCCTCA TATGTTACTCTGTAAACTTTACCTTGAATTATTTAACTTATGAAACATATTATGGTAATATTGTAGAAGT GCAATCCGGATGATGGGTGGACAACTTCTCTTAACATATCTTGAGGGTGGCAGTGCCCCACGAGGATTCC ACCCTGCTAGCTGCCACTCAGAGGTTTTTTCTCACAACATAGTATTAATCATACTTTCGCTAACCCCGTA CTATCCTAACCCCTGTCCCCTTGCTATAATTTTTCCTTATCTCGCAAGCCAAGTTTTCTGCCTAACCCCA GCTATAAAGGAAATGCTTGCTTTTCCCACCAAAAAATCAGTAATCCCTGAACTTTTATGACTTCTGAGTG CAAGGTTCTTTTTTAATCCGATCTTGGATTTCTTAGGAAAAATTGAATAATGCCTTTCCGATCTGTCACA GTGGCACTTCTATGGACAAAGATTCTTAATATTGAAATAGAAATTGAATTGCATCTTCCCATGTTCATAT TTTGTACATGTAAATGTAGACCTAGGGCATTTCATAGATTTATATGGTTGAGTTCATTGTCATTCTTTTG TTCCCCACGAGAAATGTTGTGTGTGAATATTGACCAAAGGGGCGTAAAAAACAAAACTTATAAACTGTAC AAGTATGTGATTTGTCTTACGAACTGTTCCCCATCTATCAGGTGAGGAGAGAAAAAATGTTATGCAATGT ACTTTGAAATATTATGCAGAAATAGCCTGTTTCTTGGAAAACATGGGAGGGCTATCACATTTTGCTTGAT ACTTCATGAAAGAATATAGTTATTTATGCAGAATATGTTATTTTGCCAACCTTAGTAAGGATGGCCTGAA ACAAATTAAAAAAGAAATTGAACTAAAAAAAAAAATTGAATTTTATTGTATATTCAGTTGGTGCAGATGT GTTTGTATGATATTTAAGTAGTTGTGAAGTCCTGATGAAGTTATGGTAGAGATATTTGAATGAGTTGATA TGTAAGGAAAGCTAGGAGGAACGAGAGATGGGTTAATGCCACCGCGCACCTTACGATAGGTCTGCGACCC AATTTTAGAATACAATGCCTTAACATATGATGGGAATATCAAGACATGGAATGTCGTGCTGTGCAAGTTC TAAACCCATGTTCTAACCTTTGTTTGAATCCGTTGTGATGTTACCTTCCGTATTAGAATAAAAGCAAATT CAATATCTAATCATGACTATGCCAAAGCATGCACAATCGGCTAGTATTTGAAACCAATTTGGCCTTTACT TCAAAATAAAGGCTTGCAGGTCACCAAAGTCATTATGTTGATGTTCTTACAGTTATTTTTAACCATGAAT AAAAAGATTATATTCATTATTTTTTTCTTAGACAAGCAAAATGTGATTTGTTCCAATATCCGATTGTAAA CCAGGCGTATGGTGAGTGGAGAAAGAAAAAGAAGGGGTGGAAAAGCAAGTGAGAGGCAGCTACTGTCAAC TTTGCATATAATATACAAGTTGACTGCATTGACTTCATAATTGTTAATGGTAGTGATTTTTTTTTATCTT ATTGTTAAGAAAGCATGAATGCTTGTAAGCAAGCAGCCAGAGGACTGACGGCTTCAGGTCCTCTCTGTTG GACATTGTAATGAGGATAAATGCCTTGCCAAAAGGGCACTAGCGCACCAAGTGGGAATCGAACCCGGGTC ACCGGAATCCAAACCCTCCGCTCTACCGATTGAGCTATAGAACTTGAAATCAGGCATACAATTATTCATT AACTTTTGCGTTAGGGGACCCTGTGCTCGCTGTTGAATATTATTTGATTTCAGCAAAATACACATCTTCC TTCCATGCTTACACAAGTACATTAATAACAGCCTAGTTATTGGAGTGTTCTAGCATTCTTAATGGGGGGG GGGGCATGGGAACAGATTTATTGCCCCCCCCCCCCATATAATTTTGCTTACCTTTTTTGGTTACCATTTT TTATAGTGACAGCTTTTTTAGAAAATGGTGCTGACCTTTCAATTCTTTGTTCCCCTTTTTTAATTTGTCC GATAAACTGTGCCCTCTTCACAAAGTTTTACTCGAGTATGCCACTGATTGAGCGGAATGGGTTAAAAGGT GAGGAAATTAAAAAAAGAAGAAAAAAATCTGTCATGTTCCGTCATCAACAAAGATAAATCAAATACATTT CCATGACTTTACATTGCAGAGCCATAGATAAAAGTGAAAGGAAGAGGTACAGTGGCTTGTTATTAAAGAA ACATGTAAATTCCAGTGGATGTTTAATTAAAGGAACAAGAATGGTGACAACAAACTGCTTTGCAGTTGAT ATTGTTTTGAGGGAAAATGGTCTGAATTTGCAGCTTAAAGGCTGTGACTGAGTCTTAAATTGTGCAGCAT TCTATTACCAGCTCATACAACAAGTTGTAAATGTGCTAGACTTCTCTCAAGACCCATTTGTTGATTTGAG TTTCAACCGGGTCTGTACCTGGAGACTATCAAAAAAACTTACAGGGACTTAGGATAATTTGTCTCTTCAA TGCAGAAAATGTCTTGATTTATATTTTGATTAATAAAGACTGAAAGAAAAATAAAGTGCAATGGGTGATG TGACTTTGCCATCACATTCATATCATTCTAAATATTAGAATACCACCTTTAAACCATAACAATCACATAA ACAACCAACAAACACACTCATTGAAAAGGTATTATTATGTGAGTTGTGCAGCTGCTTTTAATATATTTAA AAAATTGACAATGTCAAAGAAGAAAAATAAAATCAGTTATAAAAATCACATTATATCGTATCCAGAGGCT ACATGTATATAAAGGTATACAGATACATGTATTGTATGCCAAATTATGACCGATACAATTAATGTTACAC TCAAAGGAGGGAATAGTCACATGAATTGGTCATGACATCAGTTAATCATATACAATTTCTACGATTGATC GAAGAGTGCATAGTTTGCAATTGTTTAGCAAATGGTGCATCATTTATGATCACTTTGACAATAAAAATAA AGATACTTTTTGTAAGATTAAGCAATGTTTAAAATACTGGACTAAATAAATGTTTGGACCAACCAAATAT ATACAATGTTTACTTACATGTACACTAGATGAATTTCAGCATAGAATTCTATGATTATCTGGCAATCAGA CCAAAAAAGGCTCTAAACATTATCTTTCTTCTTTTTCAAGAAAAACAAAATTCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds