Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041611364.1 PREDICTED: Lytechinus variegatus beta-catenin (LOC446202), transcript variant X1, mRNA TACCCGTGGTTCCGTACCGTACCGTACTGTCGTACTGTCGTGTAAATTCAAATATTCATGTACAAGTACA GAACATACCACCAGATATCAGTGTGACAGCTGTGGACTATTCAACTTTCAAGGGTTTTAAAGCCCTAGCA GAAAGAGTTTCGTTGACGGAGATTGAAGGAGAAAGTCATTCACCATGGAGCAGGCAAGGTACTCTAACCA ACAACAGCCTGTGAACCCACAACAGAAAGGGTATGGCGGTCCAGGGCTTCAAGACCTGCCAAAGCAAGAT CCAATGCAGAATACCATGGAATGGCAGCATCATGGCTATGGTATGGATTCAGGATTTCAGAGCAATGCCA CCTCACATGCACCGTCAGTGAGCAGCAAGTCCCGCCATGAGGACGGCGGTGAAGAAGCCCAAGGCCAGGG AATGTTTGACTGGGATGCTGGCTATGGTCAAGCTTACACACAGGAACAGGTCGATGAGATGAACCAGCAA CTCACCCAGACACGCTCTCAGCGTGTGAGGGCAGCCATGTTCCCAGAGACCCTGGAAGAAGGTGTCCAGA TCCCATCCACTCAGTTTGACCCTGCCCATCCGACCGCCGTGCAGCGTCTCTCCGAACCCTCCCAGATGCT GAAGCATGCCGTTGTCAACCTGATCAACTACCAGGACGATGCTGATCTGGCTACCAGGGCCATCCCAGAG CTCACCAAGCTCCTCAATGATGACGACCTGGTTGTTGTAAACCAGGCTGCCATGATGGTCCACCAACTGT CCAAGAAGGAGGCCAGCCGACATGCCATCATGAACTCCCCTCAGATGGTTGCAGCTCTGGTCAGGGCCAT GTCCAACAGCAACGATGCTGAGACCACAAGGTGTGCTGCTGGCACCTTGCACAACCTGTCCCACCATAGG TCGGGTCTCCTCCAAATCTTCAAGAGCGGTGGCATCCCAGCCCTCATCAAGCTCCTCAGCTCGCCAGTGG AATCTGTACTTTTCTATGCCATCACAACCCTCCACAACCTGCTGCTTCACCAAGAAGGCTCCAAGATGGC CGTTCGTCTTGCAGGAGGCCTGCAGAAGATGGTCGCTCTGCTCTCCCGTAACAACCCCAAGTTCCTGGCC ATCACGACTGACTGCCTTCAGATCCTGGCCTACGGAAATCAGGAGAGTAAGTTGATCATCCTGGCCAGTG GTGGGCCAGCAGCTTTGGTTCACATCATGCGTACCTATGAATACGAGAAGCTTCTGTGGACAACCAGTCG GGTTCTCAAGGTTCTCTCCGTCTGCCACAACAACAAACCTGCCATCGTTGAAGCAGGAGGTATGTCAGCC CTAGGACTCCACCTTGGACACCACAGCAACCGATTGGTCCAGAACTGTCTTTGGACCTTGAGGAATCTCT CCGACTGTCATCGTGGAACTGATGACATCGAGCCCCTCCTTCAGATGCTGGTGCAGCTCCTTGCATCCAA CGACATCAACGTGGTGACCTGCGCTTGCGGTATCCTCTCCAACCTGACTTGCAACAACAGCCGCAACAAG ATGATAGTCAGTCAGATGGCTGGTGTAGAAGCCTTGGTGCAGACTCTCATGAAAGCTGGAGACAGAGAGG AAATCACAGAACCAGCAGTCTGTGCCCTACGTCATGTGACCAGCCGCCACCCCGGGGCCGAGATGTGTCA GAATACTGTCCGTCTTAACTATGGTATCCCGGTCATTGTCAAGCTCCTTCATCCTCCATCAAGATGGCCT CTGATCAAGGCCACCGTTGGATTGATTCGTAACCTAGCCCTCTGCTCTGCTAACCACGCACCATTGAGAG AACAAGGTGCTTTACACAGATTGGTACAGCTTCTTATGAGAGCTCATCAAGACACACAGAGACGTTCCTC GATGGGTAGCACTGGTAGCCAGGGTGGTAATTATGCAGATGGTGTACGTATGGAGGACATCGTAGAAGGT ACTACTGGAGCACTTCACATCCTCGCCAGGGACTCCCATAACAGAGCCCTCATCCAAGGTCTCAACTGTA TCCCTCTCTTTGTACAGTTGCTATACTCCAACATTGAGAACATCCAGCGGGTGGCAGCAGGTGTATTGTC AGAGCTTTCTTTGGAGAAACAGGGTGCTGAGATGATCGAGCAAGAGGGCGCTACTGCACCCCTCACCGAG CTACTACACTCCAGGAATGAGGGAGTTGCTACCTACGCTGCAGCAGTACTGTACCGTATGTCCGATGACA AGCCTCAGGACTACAAGAAGAGGATCTCTGTGGAACTTGGTAACTCTCTCTTCAGAGGTGATTCTGTACC TTGGGGTGATCCTCTTGATATGCCATCTGATAACCAGATCCTCCCCCCTAGCTCAATGGGAGGGCATCCA TCGGACCCTGGTTACCCTCAACATGGTAGCGTACATAGCCTTCATAGCAACCATGGTGAATATAGGCAGC CCCCACCACCAATGCAAGGCTATCATGATGGAACTGGACCCATTGAGCCTATGATGCAGGACCTGGACCT CGGAGGGGGCGGAGATTTTGGCATGGATCCCAGCCTGCCCGACATGGGACCGCCATCAAACGATTTGAAC CTTGACAGCATCCCACCCGCGGACAACACCGGCCTGGCGTTCTTCGACACCGATCTCTAAGCTGCATTGG GGTACCCAGGATTGGGGGCGTTTCACTAAGAATTATAAGTGAGTCATGCTTAAATGCTAATGTGCACATG ACATTGATTGCGCAATCCTATTGATGACTATGCATTTGCGTGTAGCCCATGAACATGTATCTCACACATG TGAGTCATATTTAATTCTTTGTGATTATTGTGAAACACCCCCAAGAATGGTATAAACAAGCAATTTTTTT TTGCTACAAAGAAAGGCTCAGCATTGGTTCTGTCTGTGAGAACTGGGTACGTGATTGATAACAGCCCAAT GTGTTTTCCTGTGTGTTACATCTATACGCAGGTGAATCATTGTGTACATAGATTGCTTGGTATATATAAA CTCTCTGGAGTAAAGTAGAATTTTGTGACACTTCACAGATCTGAAGGTATCTCTACACCATTGATTATAT GTACACCTTTGCATTGTAAATGGGGGAATGGTGTTTTTTTTTTGATAAGTTATTGAATTAGGTAACAAAT CAAAAGAAATCCATAAGTTCTCATCTTTATTCATAAAATGAAACTTACACAAATATATTTATTGAATTTC ATTTCTAGGAAAAGCCAGGAAACAAGAAATTTCATCATTCAGTTTTGATTAATGATTGATTAAGGAGACG GATGTTTACTCAGGCAAATTCAGTACTCATTGAAAAATTTAAACTTTTTGTGATAACATGTGGGCCGAAT GTTTTTTTTATTGAAGTCAGAGTGATTTTAGTTGCTCAAATCAATAACGTCACTCTTTTTTATTCTACAT GTATTCAGGTTTTGTTCTGCTTATTCTACCAGTTAATACTTTTAAATGTGAAATTATGAGCGAAAAATTA TTCTTTAAAAGTTGAAAAGTTGGAAACAACCATTCTACAAAGGGCAAAAATGTGAAAATAGTCATTCTTT AAAAGGCATTTATGACAAAACTTCGAAAGTAATTCAATTGAAATTGGAAAGGAATCATTTTAAACCAAGT GGGATGAGCATGAAATCCCCCTGGAATATGGAGGTTTGGACAGGGTCAGTGCCAACGCTATGCAGGAGGG GGCTTCTGACTATATTACTGGTGACCTACTGAAAAGTGTCCTTTCCTAGGGACCTTGTCATAGTGGTGGA GCAGTAGTCGGTCTTTGCCTTCCAAAAATGCTGCCCAGTGGTTCTAGACTCGGGCTGAATAGTTACAATG CATCCCTTCAAATTCAGTAATGATTCTTGAAAAGCTAAGGATTTTCAAAATGGGATTTAAACAGAGGGGG AGATTACACATCAGGAGGAAATTAACCAGTATTCTTTATTTTGTACTTTGTGTGATTCTCGCCATTTCCA AACTTTTTTTTTCTTTTTTAAAGAGACTTTCATCATTCAGTTTCACATTTGCTATGTCACTTTCTGCCTG GCCACAAATACTGTTATGACAAAGAGTTGGTTATTGGGCAAGGGCATAATAATATTTATGCCAATTAATA CAGTAACAGAATGTGTGACGCAAATTCAAAGCTGCCTGCTAATGTATTCAGGAAAATTTATCGACCAACT GTATGGATTTGATTACTGTTATTCATCAATTTCAACAGTTGTATTCTAGTTAGGTATTCACTTTTTTTCA GAGCATATTGTTGTATTCATTCATTCATTCTTTTATATTGACCTAAAAGAGGAGAAACAGACAAGTTTGT TGCTAGTAGTAAATATTTATTTGACTGTTTAGGGAGACACGTTCTTGTCGTTGGCCATTATTCATTCAAA GTTGACCACCTTTTTTGGAGTTACTAATATAACAATATTATGTTCAGCTGAATTTTGATATTATTTGGGG TTCACATTCTTAAATAAAAGTCAACGGATTATTCCTCCAAGGAAAGAAGACTTGGTGCAGAAGATTATGA AAAGAGGTTCTTATTCAAGTAAATCGAAATTCAAACCAATTGAGGCTTGTGGTAAAAATGGGTTAAGATA GACCACCTCTTCTGACCATTTTTTTCTAAAATAACTATGTAAATAACAACAGCATCATATTCATGATCTT CCCTCAACACTTTTTTTTCAGAAGTGAGTGGAGTTGGATTATGCAAAACAAATTACAATTTAGGACTAGC TCTTCATTGGGTTGGGTTATCTACAAGAAAGGGTATTTAAGGATCAAAATCTGTTTTGGTGTATTTATCA TGATGTACATATCCATTCTTACATTTGTGAATAAAAAAAATATTGAATGCGTAAACATAATTTGTTGATG AATTTGAAGAAAAAAAAATGATTTGTATTCAAATTGTAAATTTTATCACGACTCTATGGAGCTGTTTTTA ATAATATAATGTATGTATTCAACTCTCCTTTTGCTATTTGAAATTTCAATGAAGTGATTCTAATCCCAAT TTGACATGGGGCTTCTTGTAAACCAAGCTGGAAGATTGAGGCAATCTAAAATAAAATCATGTTGCAAATA TATTAAGATGTGATATTTGTTAGGTCTGGGAAGCATTTCATTGAACAAATGGTGGCTTGCGCTATCGTTA TAAGCTACTGAAATCCTCGATTTCGATTGTCTTAGAGCAAATTAGTCGGTGAAAATCACTGGCAAAATCT TCAATGAAACCCTCCCCTGAGATTTTTAAGCATTTCAATTTTCAATGCAAACTTTTGGTTTTCTCGTTAG TTAGTCGATCATCTTCTATGTTTATGTGAATTGTTATGTTTGATACGTTGTCTTTAGGTTGTACTGAAAT TGAGTGTTTTCATTGTTCTTTTAAAAAAACATTTTTTTATTGTATAAGCAATCTTAGCAGAAACGAACCT CCTTTAGCATTGCAGATAGTGGATGAATATTGAATGATATATGATTGTTATAGAGGAGTCAGATGTATGT TATAGAAACTTGTATATACAGAGCAAGTGGATCCTGCTTTACTCAAATAAGTTTGTAAGATGACGTAATC AGCGCCAGCTTTGAAAATAACCACCTGAACCTTCTCTTCCTCTACGACAGAAGATTAATGAAAATGAAAA TAGAAATATACCCCAAAAGAATATTTTTATAATCTTCCATACAATGTAATTCTATGTGCTGGCATTTAGT ATACAGATTAACATGTATTATTAGAAATGATATGCAGATCAATTTGTATAAAGGAGGTACTAAGCAGTAG CGACAGTAATCAAACAGTATTAGTGCACTTGTTTTTATTATTTTTTTTCAATTATTTTTATCTTCATGTG TATTCAAATGTACATTTGTATGGGGTTGTAAACTATACTGTTGTATTATTGCACCATTTAGAGACTGCTT TTTACAGCATGGCAAAGAAGTATCAATCATCACACATTCAACCATGATTTCGAAATTGCCTTCTTTGAAA AAGAAATTATACTGATTCTTCTGTTTTTTTTTTCATTCGAACCACTTGCTTAATTTAAGTCAAGTACCTA ATAATGAAGAAAAATAATCCTTTGCATGATTATTTGTTTGGCATGTATATTTTGTTTCAAAAACAAGACT GCCTTTTTTTTTAAGTGTGGTTTATATGCACATGTGATCAACATGAAAATATCCCTCAAAATCCATGAAT GAATACAGCCTTAGCTGTATTAAAAAAAAAATAATCAACCATTGTTAACCAGCCTCTATTGCTCAACAGT TTTAAATTTTCCTTCATTGCATATAACATATATCACACTGAAGAGATAATATGAACTACATAGGCTCGTA TTCTGAAGTCAAGTTTAACTTAGACCATGGTCTAACTCTGTGCTAATATTATGGAAAGCCAAAAATGTCA AAATTTTTCTTACATTGTATGTTATGTTCACTGTGTTCTTTCCTAACTTGTGAATGGTGACAAATGCTAT CTTATTTATCTTTTTGAAACAGTTGAGAATGATTTGAGAGAGAATTGAGCCGATACATTGAAATTATACT GCTAGAGATTTATGCCATTATTGGCTATCCATAGTTAAACCACAACTTTAAACCAGAGTTTAAATTAAAC CCGACTTTAGAATACGGGCCATAGTGGCCAAGTACTAGGAGTTGTTGTGGCTTGTACCAAATTTGTATGT AGAGAGCATTCCCCAGTACTATTATCTTTATTTAAATCCCCAAACCGTTTGTTACTTTGAACTGTGTATG TACCCAAGCTCTTGTATATTGCACTAATAATGCGCTTGTAAGTTTTTAGTAGAATAAATAATGCAGATTC ATTGTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds