Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041611369.1 PREDICTED: Lytechinus variegatus beta-catenin (LOC446202), transcript variant X2, mRNA TACCCGTGGTTCCGTACCGTACCGTACTGTCGTACTGTCGTGTAAATTCAAATATTCATGTACAAGTACA GAACATACCACCAGATATCAGTGTGACAGCTGTGGACTATTCAACTTTCAAGGGTTTTAAAGCCCTAGCA GAAAGAGGTGAAGGTGAGACTTAGGGATCCAAATGTCGTCCGTCCATCACAGACCTGTAATGACACATAA CTCCCAAACCGTAAATTGCTTTTCAACCAAACTTGGATGGTAGATGGACTTGGGGGACCTGCATGTTATG CTGCAATCTGAGAGTTTCGTTGACGGAGATTGAAGGAGAAAGTCATTCACCATGGAGCAGGCAAGGTACT CTAACCAACAACAGCCTGTGAACCCACAACAGAAAGGGTATGGCGGTCCAGGGCTTCAAGACCTGCCAAA GCAAGATCCAATGCAGAATACCATGGAATGGCAGCATCATGGCTATGGTATGGATTCAGGATTTCAGAGC AATGCCACCTCACATGCACCGTCAGTGAGCAGCAAGTCCCGCCATGAGGACGGCGGTGAAGAAGCCCAAG GCCAGGGAATGTTTGACTGGGATGCTGGCTATGGTCAAGCTTACACACAGGAACAGGTCGATGAGATGAA CCAGCAACTCACCCAGACACGCTCTCAGCGTGTGAGGGCAGCCATGTTCCCAGAGACCCTGGAAGAAGGT GTCCAGATCCCATCCACTCAGTTTGACCCTGCCCATCCGACCGCCGTGCAGCGTCTCTCCGAACCCTCCC AGATGCTGAAGCATGCCGTTGTCAACCTGATCAACTACCAGGACGATGCTGATCTGGCTACCAGGGCCAT CCCAGAGCTCACCAAGCTCCTCAATGATGACGACCTGGTTGTTGTAAACCAGGCTGCCATGATGGTCCAC CAACTGTCCAAGAAGGAGGCCAGCCGACATGCCATCATGAACTCCCCTCAGATGGTTGCAGCTCTGGTCA GGGCCATGTCCAACAGCAACGATGCTGAGACCACAAGGTGTGCTGCTGGCACCTTGCACAACCTGTCCCA CCATAGGTCGGGTCTCCTCCAAATCTTCAAGAGCGGTGGCATCCCAGCCCTCATCAAGCTCCTCAGCTCG CCAGTGGAATCTGTACTTTTCTATGCCATCACAACCCTCCACAACCTGCTGCTTCACCAAGAAGGCTCCA AGATGGCCGTTCGTCTTGCAGGAGGCCTGCAGAAGATGGTCGCTCTGCTCTCCCGTAACAACCCCAAGTT CCTGGCCATCACGACTGACTGCCTTCAGATCCTGGCCTACGGAAATCAGGAGAGTAAGTTGATCATCCTG GCCAGTGGTGGGCCAGCAGCTTTGGTTCACATCATGCGTACCTATGAATACGAGAAGCTTCTGTGGACAA CCAGTCGGGTTCTCAAGGTTCTCTCCGTCTGCCACAACAACAAACCTGCCATCGTTGAAGCAGGAGGTAT GTCAGCCCTAGGACTCCACCTTGGACACCACAGCAACCGATTGGTCCAGAACTGTCTTTGGACCTTGAGG AATCTCTCCGACTGTCATCGTGGAACTGATGACATCGAGCCCCTCCTTCAGATGCTGGTGCAGCTCCTTG CATCCAACGACATCAACGTGGTGACCTGCGCTTGCGGTATCCTCTCCAACCTGACTTGCAACAACAGCCG CAACAAGATGATAGTCAGTCAGATGGCTGGTGTAGAAGCCTTGGTGCAGACTCTCATGAAAGCTGGAGAC AGAGAGGAAATCACAGAACCAGCAGTCTGTGCCCTACGTCATGTGACCAGCCGCCACCCCGGGGCCGAGA TGTGTCAGAATACTGTCCGTCTTAACTATGGTATCCCGGTCATTGTCAAGCTCCTTCATCCTCCATCAAG ATGGCCTCTGATCAAGGCCACCGTTGGATTGATTCGTAACCTAGCCCTCTGCTCTGCTAACCACGCACCA TTGAGAGAACAAGGTGCTTTACACAGATTGGTACAGCTTCTTATGAGAGCTCATCAAGACACACAGAGAC GTTCCTCGATGGGTAGCACTGGTAGCCAGGGTGGTAATTATGCAGATGGTGTACGTATGGAGGACATCGT AGAAGGTACTACTGGAGCACTTCACATCCTCGCCAGGGACTCCCATAACAGAGCCCTCATCCAAGGTCTC AACTGTATCCCTCTCTTTGTACAGTTGCTATACTCCAACATTGAGAACATCCAGCGGGTGGCAGCAGGTG TATTGTCAGAGCTTTCTTTGGAGAAACAGGGTGCTGAGATGATCGAGCAAGAGGGCGCTACTGCACCCCT CACCGAGCTACTACACTCCAGGAATGAGGGAGTTGCTACCTACGCTGCAGCAGTACTGTACCGTATGTCC GATGACAAGCCTCAGGACTACAAGAAGAGGATCTCTGTGGAACTTGGTAACTCTCTCTTCAGAGGTGATT CTGTACCTTGGGGTGATCCTCTTGATATGCCATCTGATAACCAGATCCTCCCCCCTAGCTCAATGGGAGG GCATCCATCGGACCCTGGTTACCCTCAACATGGTAGCGTACATAGCCTTCATAGCAACCATGGTGAATAT AGGCAGCCCCCACCACCAATGCAAGGCTATCATGATGGAACTGGACCCATTGAGCCTATGATGCAGGACC TGGACCTCGGAGGGGGCGGAGATTTTGGCATGGATCCCAGCCTGCCCGACATGGGACCGCCATCAAACGA TTTGAACCTTGACAGCATCCCACCCGCGGACAACACCGGCCTGGCGTTCTTCGACACCGATCTCTAAGCT GCATTGGGGTACCCAGGATTGGGGGCGTTTCACTAAGAATTATAAGTGAGTCATGCTTAAATGCTAATGT GCACATGACATTGATTGCGCAATCCTATTGATGACTATGCATTTGCGTGTAGCCCATGAACATGTATCTC ACACATGTGAGTCATATTTAATTCTTTGTGATTATTGTGAAACACCCCCAAGAATGGTATAAACAAGCAA TTTTTTTTTGCTACAAAGAAAGGCTCAGCATTGGTTCTGTCTGTGAGAACTGGGTACGTGATTGATAACA GCCCAATGTGTTTTCCTGTGTGTTACATCTATACGCAGGTGAATCATTGTGTACATAGATTGCTTGGTAT ATATAAACTCTCTGGAGTAAAGTAGAATTTTGTGACACTTCACAGATCTGAAGGTATCTCTACACCATTG ATTATATGTACACCTTTGCATTGTAAATGGGGGAATGGTGTTTTTTTTTTGATAAGTTATTGAATTAGGT AACAAATCAAAAGAAATCCATAAGTTCTCATCTTTATTCATAAAATGAAACTTACACAAATATATTTATT GAATTTCATTTCTAGGAAAAGCCAGGAAACAAGAAATTTCATCATTCAGTTTTGATTAATGATTGATTAA GGAGACGGATGTTTACTCAGGCAAATTCAGTACTCATTGAAAAATTTAAACTTTTTGTGATAACATGTGG GCCGAATGTTTTTTTTATTGAAGTCAGAGTGATTTTAGTTGCTCAAATCAATAACGTCACTCTTTTTTAT TCTACATGTATTCAGGTTTTGTTCTGCTTATTCTACCAGTTAATACTTTTAAATGTGAAATTATGAGCGA AAAATTATTCTTTAAAAGTTGAAAAGTTGGAAACAACCATTCTACAAAGGGCAAAAATGTGAAAATAGTC ATTCTTTAAAAGGCATTTATGACAAAACTTCGAAAGTAATTCAATTGAAATTGGAAAGGAATCATTTTAA ACCAAGTGGGATGAGCATGAAATCCCCCTGGAATATGGAGGTTTGGACAGGGTCAGTGCCAACGCTATGC AGGAGGGGGCTTCTGACTATATTACTGGTGACCTACTGAAAAGTGTCCTTTCCTAGGGACCTTGTCATAG TGGTGGAGCAGTAGTCGGTCTTTGCCTTCCAAAAATGCTGCCCAGTGGTTCTAGACTCGGGCTGAATAGT TACAATGCATCCCTTCAAATTCAGTAATGATTCTTGAAAAGCTAAGGATTTTCAAAATGGGATTTAAACA GAGGGGGAGATTACACATCAGGAGGAAATTAACCAGTATTCTTTATTTTGTACTTTGTGTGATTCTCGCC ATTTCCAAACTTTTTTTTTCTTTTTTAAAGAGACTTTCATCATTCAGTTTCACATTTGCTATGTCACTTT CTGCCTGGCCACAAATACTGTTATGACAAAGAGTTGGTTATTGGGCAAGGGCATAATAATATTTATGCCA ATTAATACAGTAACAGAATGTGTGACGCAAATTCAAAGCTGCCTGCTAATGTATTCAGGAAAATTTATCG ACCAACTGTATGGATTTGATTACTGTTATTCATCAATTTCAACAGTTGTATTCTAGTTAGGTATTCACTT TTTTTCAGAGCATATTGTTGTATTCATTCATTCATTCTTTTATATTGACCTAAAAGAGGAGAAACAGACA AGTTTGTTGCTAGTAGTAAATATTTATTTGACTGTTTAGGGAGACACGTTCTTGTCGTTGGCCATTATTC ATTCAAAGTTGACCACCTTTTTTGGAGTTACTAATATAACAATATTATGTTCAGCTGAATTTTGATATTA TTTGGGGTTCACATTCTTAAATAAAAGTCAACGGATTATTCCTCCAAGGAAAGAAGACTTGGTGCAGAAG ATTATGAAAAGAGGTTCTTATTCAAGTAAATCGAAATTCAAACCAATTGAGGCTTGTGGTAAAAATGGGT TAAGATAGACCACCTCTTCTGACCATTTTTTTCTAAAATAACTATGTAAATAACAACAGCATCATATTCA TGATCTTCCCTCAACACTTTTTTTTCAGAAGTGAGTGGAGTTGGATTATGCAAAACAAATTACAATTTAG GACTAGCTCTTCATTGGGTTGGGTTATCTACAAGAAAGGGTATTTAAGGATCAAAATCTGTTTTGGTGTA TTTATCATGATGTACATATCCATTCTTACATTTGTGAATAAAAAAAATATTGAATGCGTAAACATAATTT GTTGATGAATTTGAAGAAAAAAAAATGATTTGTATTCAAATTGTAAATTTTATCACGACTCTATGGAGCT GTTTTTAATAATATAATGTATGTATTCAACTCTCCTTTTGCTATTTGAAATTTCAATGAAGTGATTCTAA TCCCAATTTGACATGGGGCTTCTTGTAAACCAAGCTGGAAGATTGAGGCAATCTAAAATAAAATCATGTT GCAAATATATTAAGATGTGATATTTGTTAGGTCTGGGAAGCATTTCATTGAACAAATGGTGGCTTGCGCT ATCGTTATAAGCTACTGAAATCCTCGATTTCGATTGTCTTAGAGCAAATTAGTCGGTGAAAATCACTGGC AAAATCTTCAATGAAACCCTCCCCTGAGATTTTTAAGCATTTCAATTTTCAATGCAAACTTTTGGTTTTC TCGTTAGTTAGTCGATCATCTTCTATGTTTATGTGAATTGTTATGTTTGATACGTTGTCTTTAGGTTGTA CTGAAATTGAGTGTTTTCATTGTTCTTTTAAAAAAACATTTTTTTATTGTATAAGCAATCTTAGCAGAAA CGAACCTCCTTTAGCATTGCAGATAGTGGATGAATATTGAATGATATATGATTGTTATAGAGGAGTCAGA TGTATGTTATAGAAACTTGTATATACAGAGCAAGTGGATCCTGCTTTACTCAAATAAGTTTGTAAGATGA CGTAATCAGCGCCAGCTTTGAAAATAACCACCTGAACCTTCTCTTCCTCTACGACAGAAGATTAATGAAA ATGAAAATAGAAATATACCCCAAAAGAATATTTTTATAATCTTCCATACAATGTAATTCTATGTGCTGGC ATTTAGTATACAGATTAACATGTATTATTAGAAATGATATGCAGATCAATTTGTATAAAGGAGGTACTAA GCAGTAGCGACAGTAATCAAACAGTATTAGTGCACTTGTTTTTATTATTTTTTTTCAATTATTTTTATCT TCATGTGTATTCAAATGTACATTTGTATGGGGTTGTAAACTATACTGTTGTATTATTGCACCATTTAGAG ACTGCTTTTTACAGCATGGCAAAGAAGTATCAATCATCACACATTCAACCATGATTTCGAAATTGCCTTC TTTGAAAAAGAAATTATACTGATTCTTCTGTTTTTTTTTTCATTCGAACCACTTGCTTAATTTAAGTCAA GTACCTAATAATGAAGAAAAATAATCCTTTGCATGATTATTTGTTTGGCATGTATATTTTGTTTCAAAAA CAAGACTGCCTTTTTTTTTAAGTGTGGTTTATATGCACATGTGATCAACATGAAAATATCCCTCAAAATC CATGAATGAATACAGCCTTAGCTGTATTAAAAAAAAAATAATCAACCATTGTTAACCAGCCTCTATTGCT CAACAGTTTTAAATTTTCCTTCATTGCATATAACATATATCACACTGAAGAGATAATATGAACTACATAG GCTCGTATTCTGAAGTCAAGTTTAACTTAGACCATGGTCTAACTCTGTGCTAATATTATGGAAAGCCAAA AATGTCAAAATTTTTCTTACATTGTATGTTATGTTCACTGTGTTCTTTCCTAACTTGTGAATGGTGACAA ATGCTATCTTATTTATCTTTTTGAAACAGTTGAGAATGATTTGAGAGAGAATTGAGCCGATACATTGAAA TTATACTGCTAGAGATTTATGCCATTATTGGCTATCCATAGTTAAACCACAACTTTAAACCAGAGTTTAA ATTAAACCCGACTTTAGAATACGGGCCATAGTGGCCAAGTACTAGGAGTTGTTGTGGCTTGTACCAAATT TGTATGTAGAGAGCATTCCCCAGTACTATTATCTTTATTTAAATCCCCAAACCGTTTGTTACTTTGAACT GTGTATGTACCCAAGCTCTTGTATATTGCACTAATAATGCGCTTGTAAGTTTTTAGTAGAATAAATAATG CAGATTCATTGTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
