Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038217784.1 PREDICTED: Patiria miniata catenin beta-like (LOC119741863), transcript variant X1, mRNA TCGCCATCTTGGTTTGTTCGTAAAAGCAGTGCAGTGCAACCCGAAAACCGCCGTCTGCACACACTCTACG GGGACAATCGAACTTCTCACACCGAATAGTTGGCTGTTTTGACCTTCAAATTTCCTGCTTTAAACAGTGA ATTTCTGGCAGCTTGACGACAATTTACGGGCTGTAAGGGTTTCTTGAAACCCACAATTATTTGGAGTGTG AGTAAGAAATAGCAAGAAGTACTGGGAACTACTTTATCAAAATGGAAGCCCAGAGGCAAAAGCCATTTGT GGCTAGCCCAGCCGGCCAGAGTGCTTACGGCAGCCCAGCCCTCTCTGATCTACCCAAGCAGGACCCCATG CAGCAGACGCTAGACTGGCAGCATCACGGCTATGGTATGGACTCTGGAATACAGAGTGGCGTTACTACAC AGGCTCCATCAGTCAGTAGCAAGAGCCATCATGATGAGGAGTCTGAAATGAGCGCAGGTCAAGGCATGTT TGATTGGGACAGCAGCTATGGGCAGGCTTACACTCAGGAACAGGTGGACGAAATGAACCAGCAGTTGAAC CAGACCCGCTCGCAGCGTGTGCGCGCCGCCATGTTCCCAGAGACCTTAGAGGAAGGGGTTCAGATCCCGT CCACCCAGTTTGACCCCAACCACCAGACCTCGGTCCAGCGCCTGGCCGAGCCCTCTCAGATGCTGAAACA CGCCGTGGTCAATCTCATCAACTACCAGGATGATGCTGACTTGGCCACTCGCGCCATCCCCGAACTCACC AAGCTTCTCAGTGATGAGGACCAGGTGGTTGTCAGCCAAGCTGCCATGATGGTCCACCAGCTCTCCAAGA AGGAAGCCAGCCGTCACGCCATCATGAACTCCCCTCAGGTGGTGGCCGCTTTGGTCCGTGCCATGTCTAA CTCCAATGACCTAGAGACCACCAGGTGTGCCGTGGGTACACTGCATAACCTCTCCCACCACCGCGCCGGT CTGCAGTCCATCTTCAAGAGCGGCGGGATCCCGGCCCTCGTCAAGCTTCTCAGCTCCACTGTTGAGTCAG TGCTCTTCTATGCCATCACCACCTTACACAATCTCCTGCTCCACCAAGAAGGCTCCAAGATGGCTGTGCG TCTGGCCGGAGGCCTACAGAAGATGGTCATGCTGCTGGCCCGTAACAACGTCAAGTTCCTGGCCATCTGC ACAGACTGCTTGCAGATCCTGGCCTTTGGCAACCAGGAAAGCAAGCTGATCATCCTTGCCAGTGGAGGTC CAGCCCAGCTCGTCCGCATCATGCGTACCTACACCTATGAGAAGCTGCTGTGGACAACAAGCCGCGTCCT CAAGGTGCTGTCTGTCTGCCCCAGCAACAAACCAGCCATCGTCGAAGCTGGTGGTATGCAGGCTCTGGGC ATGCAGCTTGGTCATCAGAGCAACAGACTGGTGCAGAACTGCCTGTGGACCCTGCGCAACCTGTCAGATG CTGCAGTCAGAATGGATGATTTGGAAGGCCTGCTTCAGATGCTGGTGCAACTCCTGGCCTCCAACGACAT CAGCGTGGTCACCTGTGCCTGCGGCATCCTGTCCAATCTGACCTGTAACAACGCCCGGAATAAGATCATC GTCTGCCAAGTGGGTGGTATCGAGGCCTTGGTGCGTGTAGTCATCCAAGCTGGTGACAGGGAGGAAATCA CTGAACCAGGGGTGTGTGCCTTGCGTCACTTGACCAGCCGACACCCAGAAGCTGAGACGGCCCAGAATTC AGTGCGTCATAACTTTGGTATCCCGGTAGCAGCTAAGCTCCTGCAGGCTCCGTCCCACTGGCCTCTCATC AAAGCCACCATTGGACTGGTGCGTAACTTGGCCCTGTGCCCAGCCAACCATGCACCTCTGCGTGAGCACG GCGTCATCCCACGACTGGTCCAGCTTCTCATGAGAGCTAACCAGGACTCACAGAGGAGACAGTCAGGCGG TGCTAATGGACAGAGCTACACTGACGGTGTGCGCATGGAGGAGATCATCGAGGGAGCCGTTGGTGCGCTT CACATCTTGGCCAGAGACATGCACAACAGGATGCTGATCAGAAACCTCAGCACTGTGCCTCTCTTTGTGC AGCTGCTGTACTCCAACATTGAGAACATCCAGCGTGTGACTGCAGGCGTCCTGTGTGAGCTTGCCCAGGA TAAGGAAGGGGCAGAGATTATTGAGCAGGAAGGGGCAACGGCACCCTTGACTGAGCTGCTGCACTCCAGA AATGAGGGAGTTGCCACCTACGCTGCAGCTGTGCTGTACCGCATGTCTGAAGACAAACCACAGGATTACA AGAAGCGTATCAGCGTTGAGTTATCCAACTCCCTGTTCAGAGGAGACACTGCACCATGGGGCGAGCCCAT GGACATGCCCGATCCGCCAATCATACAGCAAGACTTCTCCCATCACAGTAGCGCCAGCAGCCTGCATAGT GACTACAGACACCAGCAACCGCCGCCACAACAGCAGCAAGGTGGAGCTATGCACATGCAAGGTAACTATC AGGAGCCCATGTCACTTGAGCCGATGATGCAAGATCTGGATCTGGGATCTCACACGGACTACGGCATGGA CCCCACATTGGCCAACTTAGGCCCACCCTCCGCTGACCTGAATCTGGACGGACTCCCCCCTACAGACAGC AGTGGACTGGCCTTCTTTGACACCGATCTGTGAGCCATGCTTGAGGAGTGTTCCATTATAAAAGAGGGGG GAGAGGGATAAAACCCCATATCAGCATCAGACCTCTGAGTGACCTTTCTGTCGAAAGAAAAAAAAAACTG GTAGTTTTAAATTTTGCATTTGTTACCAGCAATGTTATTTGCATAATTCAGTTATTTTTCGAATGGAAGG TGCCAAATTTTTTCAGTGCTGAAAATTGAAAGTTAACAGTCATTCTGCTTGTGGAATTCATCTGCGATGG TCTTTTTTTTAATTAGTACCCAGGGGAACCTTGGTACTAACGTCGGAAACTGGCAATTATGTAAAATGAA ACATTTTTTTACAAAGAATAATGCAAAATTCCAGTAAAGCAATGCTTTTCATGACCACTTTTCTTCCCAA TTTCACTTTTGCCAATTCAGTGCTATTGCATTTTGTTTACTGCTTCCAGTAGTTGTTTTGAGTATATTTG CTGCACATGAAAACATTTAGCCAAAAATGTCCAGCATTTAATGAATTTGTCTCGGTAAAGTAGCTGAGAC CTCTACAAAGACATTTACTAGAGCAGCATTGTATACAGAAAATATATAATCATCATTTGTAAACCAACCA ATCAGGGTAAAGAGAGAAGGTCAGATTTGGCCAAACATAATCAATTGCACGCTTGGTTAGACTTATACAT TGACTAAATGTGTGCTGGAGGTACAATGCATTGTGCTGCTACCGAAACTCAGTGTAAAAAAAATTGTTTT CTTCAGAAAAAAAAAAAAGAGTGGCAAAATGTAGTACAAGGCAGAGCTTTAGTTGCTGGAATTTTGAAAC GAAGGAGCCATATTATGTGCACTTCATGTAGACAGTACTTTTATTGTGTGATAAAACTGTAGTTCATTGC TCCAGCAGCAGATTTATAAGAAAAACTAAACAAGAAACCGCTACGGAATATCTGTACAGTAGGGGATGTA ATAACAAAGGGAGGAAAGTCCTCACGTGGGGATTGTCGGAGTGGCGGTTTGGATTGTTACGAAGCGCACT GTGGCCCACCAAAAAGTTGTGAAATAACGGGGTAAGACTGTAAATTACTTATGGTTTTTAACAAAGTACT ACTTGAAGTGTAAGACGTCCAATCAATTTGGGAGCTGTTCTACAACTCCATGACATATACATTCACACAG TACTACTGAAAATGTGATTTCACTTCTGGTAAAAAACCCTGAGACTACTGGTTCAGCAGAAACAGTGTTA GAAGGTCATTTCAATTTTGCTGGTGTTGAGCTCGATTAAAAAAAGAGAGGACATTTTGAAGGTCTTGTTA TGTAAAAAGACAGGATTTTTTTTTTATACAACTACTTCTGTCGATAAACAGGCATGAAACAAATGTAGAA GTGTTTGGACAAAAGTGTTTAATCCTAATTAAAGAGCAGACTAAGCCTCTGAACTGATGATGTCACACTT TGTTTACATGTGTGCTTTCCTAAGGTGCTCAGTGGACCGTGGGCCCCCACTGGCTCCATAGGAAAGTGCA CATGTAAACAAAGTGTGACGTCATCAGTACAGAGGCTTATTTGAAGCTTGTAAATATGTGGCATATTTCT TCCTTTTTTTTTAACCCAAAACATACCAATCAAATAATGAAGAAAGAATTGGGGTGTGGAGTTGTGACTT TTTTTGTTATGAATGAAATGTGATTTTTTTTAAAGTAATTTTTAAATGTAATTGTCTGTGATGTAGGCGG TACAAGTCTTGAGTACTTCTTCAGTGATGTTCAGTGTGTTTCTGAGAATCCAAAAGAAGTACTCGCATTG TTACAGATGGAAGGAGCTTTCTAGAAGTTGTTGAAGCCATTGAAATGTAACAAAGGAAACCACATTGGCT CAACATAGATAAGACAACAATTATTGCAAAGTTTTCAGATTGCTTGAGCGTTTCTAGTCAGCGTGAGTTT AACGTCACAGTTGAGCTGTAGAGCTGCAGGCATACGTGTGAAGCCCACATTTCATTGTACATACATGCAC CATTGGATTGTTGTACAACATCGCATTGAAATATTGCTCAGTTGTTCAGATAAAAAATGAATGTTCGAAA GACGAGGCGCTCGAGTTTATTTGCCGACGTGTACATTGAAAGTTAGCACTGAACACAATCCACTGATGGT CGGCAATTCTTGACCATCACTGCGAGCAGTGGTGATAACAGTATTTAAATCATGAAATTAAATGTTTGCT TTCTGTTTTTACTGACGTTTGTTTTAATCTAATTCATGTGAACCAAAAAACTGATGTACTGTGTAAAATA TTTGTCCCACATCAGTACTTAAGACAGGGGAAAACGATTCACTAAAGATTATTTTATTTTTAAGTTTCTA AAAAAAGAGGTATTCGTTTTGCAATCAAGCTTTACCAAAATCTGCAACTGCTTCTGGAATGAAAGGTTTT AAGTTTGGGCCTGTGAATGGGTGCATTGATAAGCATTTCGTAGGTGGTGTCAGCGTATGTTTACTTATTG TTCAGCTGCACAATGCCATTTCAAAGTAGTTGAACTCATAATGTTGCCCAAATGTTAACAAGCTACCTAG TTCTATAAGGAGATCACTAGAGTGAAGTGAATGACACGCTGCACTTGTCTATAAATGTTTGGCTGTGAAT TCAATGGTTACACAATTGAGGAGAATTTTTGTATGGTATTCGGCAGTTTTTGGCACAATGCGCTGCTCGC TCTTTTCGCTATTTTACGTCGTGTTATTTTTCTTTGGTGTGTCTTAACTTACATCTCTTAAGTGTCATTG AACAATTTTATTTGCCGTCACGTCTAGTAGTTGTTATTATTTTTTTAATTAAAGTTTTCATAATTAGTTA CGCAGTGTTAATGTCACTATAGGCGAGTTGAAATAACAGTGGGTTAATTCCAGTGTAAAGAAACAGCAAA TGTATATCACGATGGCATTTTTTTGATAGTACATACGCATTAATAATCTTAAAGTATTTTTTAGAGTTGT TTTCAGGCTAGTCAGTGCTCGTATGCAATCAAAGCTGTTGTATTCCATTTTAACATGTTTTCCCAATTTT TAAGTGATTACTTTTTAAAACTTCATTTTTTTTCTGTGTATCTGCCAGTTATTGTTTTTTAGTGAGTTGT ACCGGTAGGATTGTTTGTTTTCATTTAATTAACCCTAACCCCTTCAGTGATTTACTAGGAACCTTCCTCT CTCTTGCAAAATCCAACACCATATGGTTCATGTAACTCAACACCCAAACTGTTGGACTCTGACTATGGTG GTATGCCTGACCCCATGTAAAGCATAATCAGTTTACTAGTGCAGTACTCACTCCAACAGTTCCAACAAAA CATGCAGTTGGATTTTGATGGGTTGGGGTGGTTTAAGGACTCCAGTTTGTGGAAGGTTGCATATGTATGA ATTTATGTATGGTTATTCTATAAATTTGGGGTCTACTTTTTTCCTGTCCCTTACATCTGACCTCATTTAT AATTCTGGATGTACTCCTTAAATGCAGTCGTCCTCCAAGAGTGATTATTAATAGTAAACTACCCGCCCAG CAATTAAAAGTTCGTTTGAAGTTATTGGTAATGATACTTGAATGGCAAATTCCAAACTTCAGAGGTAACG GGACAGGAAAAATGTCACACTTGTGACTTTTGACCTTAAATTTATGGAATATCCATTAACGTATGTAGGA GCTGCAACCTTATAATTAAACATTAAAATGGCAAGATCAGTACTGGTCCTGTACTATCAAGTTATCCAAA TTGATGATTATTTTCGGGTGAATATTGCAAGGATCTCGGCTGAAAATCAGTCCATCCAAACGGTTTGAAA CGGCGTGAAATGTGTTAAGCTTGTATATTTTTCTGCCTAACTTTTAATAACCCTCTGATTGTGATTTTAC ATTTTTGTTGTTTTCGAATTGGCGAATTGACTTGCACCTTTCTTCCTGTTCTGACCATGTGTTTTTCTCA ATTTCTTTTGAGAATGGATAAACATTGGTTTATTTATTCACACTTTCCGGGACACACCAGTACAGCCAGG GGTATCCGGGTGCATGGAAAGTGGCAAAGCATGCCCAGATGGGCCCGGACAGGGCTGAACGAATGAAAAG AAATTTCTGATCAAATTGTTTGTGTGTAATTTTTAAAGTCGTTAAGTTATTGAAATACATCTAACGCTTT GTGTACATTTCACCCACTTGCTATTTTCATTTCTTGTTATTTTTATAAAGCTGTTTGTTATATTAGATGC GTATTTTTTTTGTGTTGAGACTTCCAAGCCCCGTATTTACGGTATGTAGAAATAAAAATGCAACAGCATG CCCTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds