Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT108051.1 TSA: Strongylocentrotus purpuratus WHL22.91758.0 mRNA sequence CGTCAATCTTCTTTACGGGGGGTGGGCAGTGAGTCGACCCATAAGGGGGGATCATAAAACCCACAATACA CACTTTACCAGAGTCTCGCCGTCGTCGACCAAAAGAAGTTTGTTCAGAGTCGGTTGAGGCTGGTTCGCAA AGGAAGTACGTACTGACAGCTTCTGTAACCATAAAACCACAACACGAATACACTTCAGACTCCATTTCAA CACTGGATTCATAACCGATATGTTAGCTATTCATTGAGACTTAACGGCGTTACCTACAGTATTCGTGAAT TTCTGTTTTCATCATTTCGCATTCTCGGATTTCTCTGGGACGCATCGACGCTGATGCTACACTGCATACT TAAAAAGGATATCGTGTTAATTGAGACTTAGGAGAGAGGCTGGTTAAGAAACTTCTGGAGCCCACGTTAC TTAGCGGAACGTTACGGTAAATCTTCGCCCATTTGTTCCTGGTTTCCTGCTGGCTTTTCGCACTCGAGAA GCGCAACGGGCGTTTGGTAGAATTAGTTTCATCTTCGACCATTGAGAACTGTGTTCTTCATAGTATAGCA GCGTTGCAGCAACGCCAGCAACCTCACCAGCAACATGCCAGTGATGGGTTGCGATGGGGAGTCGTCGACC AATTCACCTGGTTCTTTTATCAGCAACATTAGCCTTAACAGCAGCATGAGTAGCATGAGCAGCGGCTCCA ATACCACTGGTGGTGTAGGCCACCACGAACTCCTCGCCGGCAGCCCGGCGGTATGTGCCGGGTGCGGCGG CCGCATCTGCGATCGGTTTTACCTGCTAGCGGCAGACAGACAGTGGCATACACAGTGCCTCCAGTGCTGC GAGTGTAATGTTCAACTGGATAGCGAGTTATCCTGCTTCGCCAAAGAAGGAAATATTTACTGCAAGGAAG ACTATTTAAAACGGTATGGAATCAAGAAATGCGCCCGTTGTCACGTGGGCATCGAATCCCACGAGATGGT GATGCGAGCCCGTGAGCTGGTCTACCATCTCGCCTGCTTCAGCTGCGCCGTGTGCAACCTCGAACTCCAC ACGGGCGACTACTACGGGATGCGGGAAAACCTGGTGTACTGCCAACTCCACTACGAAACCCTCTTCGTTC CGTCCTCCGATCAGAGCACCTATCACCATCTCCACCACGCCTCGCCTCCTCCTCCGCAACCAACCCTCCA TAATCTCTCGCCCAGTTACCACACCCATGGGGGCTCACCCAACCCGGCGGCGCCGTCGACCGGACACCCC TTCTTCCAGAATGGACTGTCCCCCATCCACAAAGGGAGACCACGCAAACGCAAGGGTGTGGACCATCTCA TTGGCTTTGGAATGGGTATGAATGACCCCTGTGATCCGATGGGACACCATGGGCACCATCCCGGACTGGA CGGCGACATGTACCATCAGCACGTGCCAGCCGCAAGGACCAAGCGAATGCGAACCTCCTTCAAGCACCAT CAGCTGAGAACCATGAAGTCCTACTTCGCCATGAACCACAATCCGGACGCCAAGGACCTCAAGCAACTGG CCCACAAGACGGGGCTGACCAAGAGAGTTCTGCAGGTTTGGTTCCAGAATGCCCGCGCCAAATACAGGCG GACTTCCACGAAGAAAGACGATGAGAAATCGGAAAAGAATGCCTCTGAGTGCGATGGAGATCAGCCATCA CCGTCGACCCAGGTGGACGACCAGGACAACATCAGTATCACCAGCAGCGGCGGCGGTGGTGGTAGCGGTA GCGGCAGCGATCCCACCGCTGACACCATGTATGATGACGGTGACGAGGACGACGAAGATAAGCTCCTTGA TGAAATCACGACCTACAGTGAGCTCAAAACGGCATCGCCTGCCGTGGCGGACGAGGTGTCCACCATCTCC TCGATGCCAGCGTCGGCGCGGATGCTGCATGGTCTACATGGCCCACCCGGCCCGACTCCGGGTAACATAC ACCACGGTATGGGCCTTATGTCGCATGGCTTTGTCGAAATCTTCAGTAACTCGGCATAGAGAACCATTCT CCCAGATCAATTGTTATCGCTTATTTATTTGATGACGGACGTCATATTGCTTTTCATTGCCAGCTCAATG ATGTACAGACAGGAGCATGGCTCTAGTGAGAGAGAGAGGCCTATTCTGCATCCCCAAGATGCATCATTAT AAAATCGAAACATGGAACCGTTTTTATCAACACCAAATCAATCCTGGCTTCTGGGTTTTGTTTTGTAACA TGGACCTTGAAGGAACTCTTTGCGGACACAACCAACTGAACTCTCTATGTCGATCCTGTCCGCGAACCAT AAGATTGGAATCATATCAACATAAGAAAAAAATAAGACGGACTTAAATCGAGAATTAGAGTATATTTACA GACCATGGACGAATGCTGCTCATTGGTGTTTTCAGTCACGTGTGCTAGTTGGTGAAATCACTCTGTCAAC GACAGACTTCTTGGTTTACACAGAAAACTTCGTGATTTTGACTGCGGTGTTAGTGTTAATGTTCGTTTTA GTTTCAGTGTTATTACATTGTTTTAAGAGCGTTACATCTCTAGGTCTAGAGGTCAAACGTTAACTCTGAA TGAAATGTTCTCATGTGTAACATCTCTAGTGCTTGGTCCCATGACAAGTTTTCTCGTGAAGTTCCTCTTT CTGGGTGACCATATCATAGATGCGCCAAGGTTAGCCTCTCACTTTTCCATATAAATGTTTGTAGCACTCT GTGACGAAATCGATGACGTGATATTAGACCAATCATGAAATGAAACTGAATAAGCAATGCCATGGTGATA TGCTAACTATTTATTTTATGTGTTTCGTTGCAGATTAATTATGAAGAGATATACGGGATGAAAAGTTAAA ACAATAATGTCCAGATCAGCAGACAATGTTGATCTACTGTCTATGTTTAATCCTTGTCAAAAAGAAATCT ACTTTGCATTTATGAATAACGGCTTTGGATTAATAACTGAACCTCGTTTTTATGTGTATCCATGTCCATG CATATCATCAAAAGTTACGGTTATATATTTTCTGAAATTATGTTTAATTTGTGTATTCAGTCTAACTTGC ACAATTATTGTCTTCAGTCTTCACCACTAATTCTAAAGAGTTGAGAAAAACATGGTGTTTCAACGTAAGT GTGAATCCCTCACTATCTATCATCACATGCCAAATAGTATTAACGGTTGCACTATTGATATAGTTAATTA TCATTTGCATAATTAGAGTAATGTTGGCACCAAGTTAAGTCGCACTGTGCGTTCAAAATGCACTTGCAAT TCTGGTCGTGGGTGTTGTAATAATAGTCATTTTGTTTATCTAGGAAAGCTTCATCGGCTTTAGTGCTATT CTTTCTGATGGCCCTGCAACTATTATTGCCCCAGCAATCGCAAGGTACCCATTTACACCTCGGTCATGTT GGTTGAGATTGGCAAATGTGGATTAATGTCTTGTTAAAGGACGTTTGTGCAGGGCTGGGATTCGAACCCT CAGCCCTTGGATTGAGAGTCAAGCGATGAACCACTATACCATCATGAAGGTGAGACCTTTGTCTAAACTA AGATGCATTACGCCCGCCTAGCGTGATCTCAGCCATGCATTTTTTTTAACTTGTTGTCAATTCTGTGCAG TCGTCGTGTGATGTGTATTCAAATTAGGATTCAATGTTCCAAACGTCACGAATGCTATAGAAGATAAGCA CAACATTATCATAAAACAGCTATACGTCTTTCCAGAGTCCAACCACTTCTCTCAATGTTTAAAATGTCAA AACTGATATGATATGCAGGATAAGCACAAAGACATAATCTTTATATAAAACGGTTCTTTGTCTTTCCACT TCCAACCATACGCAAAATGTTCGTCAACCTTCATCTCTCAAGGTCTGATTTTGTATCTTCTCTTTTAATG ATATGTGGTCGTTCAATTTTATTATATGTCCATTTTGTGTGGCAGTTTCGTAAATTGCCCATTTGATAAG ATATTGTGTTTGTATTCTTGTCCCATAGATGTCGTATATTCACTGTGTATGTTGGATTACACTCCATGTA CTAGCACAAAATTTGCACCTTGTAAAATAGAATACCTTGCCATAATTATTTTGTTATAGACATCGAGTAC TTATTATCACTTGTTCTGCTAACGGGATTTGCACATCGCATGAGGGGGAATTGAAGTCATTTCATGTAGC GGTTTGTATTTACCGCATGTCAGTTGATAATAAGACGTATTTAAATGAATCCAAAACAAATTCATAAATT GATTAACCAGCAAAAATGATAAAGAAATTCCTTTTCATGAAATTGTTAGATAGGCAATATAGTACCATTA GATTCGAATAAACAATGGCTTAATTTCAAACTTTTTAAAATTTTGAGTACTCATGCAACAAACTGAATAT CATGATATAGTAAGAGCACTCGAAAAATATCAAATTTGTAGATACTTTCGACTTTCGTATAATCATGATG ATGAAATCGTTGACAAAAATCATTCTGTCTTTGTTTAACAAGTACTAATATTCGTACTATAATTATTTGC GATATCGCTTCACGTCGTGGCTGGGTAATCTAGATAGTTTAGCCATAGAGAAGTAAAGGAAATTAGAATA ATAAAATGATTTATTATACAGCATTAAATTGCTCTTTCTGCGTAGTCTTTTACGCAATAACAATCCCCTG TTTGGTTCAACACATTTTATAGGCAAAATACTCTTGATTGTTATTGCAAACACAAACATATCGTATTTTT ATCTTTTTAAAAGATTGCAAACACAAAGATATCTCATTTTTATTTTCATTTTCCCTTTTCTGCGTTAATA CCTCAAAAATTTAATCATACCTCAATTAAGTCTGCCAGAATCTTGCCATTCTGTTAAGAGGTTTACAGAT TTCTGTTAATGCTTCTATGACACCCACTTTTCCTAAAACTCAATCAACATACTTGTATTTATACAGTGCG TCCCAAAGAAAAAAAACCCGAAAACAAACGGATATTGAGAAAAAAATTATGAGCTATATAAATATAATTC CTTGCTTTTTATACTGCAGAAGTAATGTGATTTTGAATGATGATACATTGACGATTGTAATCTATATACC CGCTTCACTGAGCAACATTGTTTAGAAAATGCCATGTCAAAATCCGTTTGTGCCAGATGTGAGTGTAACG ATGAACATGGTTTTAAACGTTTTTCTCACCATTATCGTTTGTCTTCGGCGGATTTCGTTTTTTTTTTCTT TCTGGGACGCACTGTATATTCGAATTCGCTTCTCAAGCCCCTTACGCAATTAGTCAACCGGAGAAAATAT GGTTTGGGCGAAGAAGCGATTTTTGGGGCGCCTTTATGAATAATGTACTAGGGGTCTTTATGTATTTATA AGGATATATTTTCAGTGTTAATGTTTGTTTCATTCGTCAGAGGATGGTTGACGAAATACTTCGCAAAACA AAACAGTACTTGATAGATAAAGCTGAGAGAGGAATTGTACAACATTTATAAATTCTAACGGTATTGGTTG ACGGCTATGATACAAATTATAGAAATTAAAAGTAATTTGTTATCAAGTAATCATAAGCAAGCCTATATAC CCTAAATTTAAAAGCATGCAAAACAGTGGACTCGTTTCCAAGATAACTACACTTTGCAGGGTATCTCTGC ATCAAGTCATATCACGCATTTTAGTGGGATTGCAGTTGTTTCAACATGCTACTTCTTATCCGTCAGAGAT ACAAGTTCACCCGATTTTAATGAGGCATAGGAAAAAGTTCTGTATTTCTAGACTTATTTGTGGATGATGG ATACTATGTGAATATTTATTTATAGTAGTAACCAGTGGTCACATTGAATTACCAATACTTCACTGTCATT CTAGTATTTATTTAAAAATCCATACGCCAGTGTTTTCATGTTGTTAGCCTGCACATTGCAGAAAGTATAT TATCATAAGAGATGGACATATAAATGAAGTAGTTTATCTAAAGCTACTTTTTTGAAAGTTATTTTGAGGT ATACCCATCCAGAAATGAATCATAAACTTTTTCGAATCAAGCAAATGTGAAAACTTTGAAAATAAAACAT TACAGCCGTAATTACGTCCAGATTCTAGCCAAAATGTTGAACAAGAACGGAATTTCAGAAATGTTCATTT TGAGTGAACAGTGTCACATGAAGTATGGTAATGTGATGGTTCATTATAGACTGGTTGTACCTTACCTTGC TACGTAGAGATAATATATGGTGGTGATTGAATTTATGCCGAAAAGAAGAGAAAATACAGGAGAGGGTGAA AAAGTTGTAAATTAATTTGCAAATAGTAATTTATTTGAATTTTATTGATATGTTATGAACATGTGGCAGG TGTGAAGCCCTGTTTTTCTGTACAGAAATGTTGTGCTTTATGTTTGTATACAGTGGCTACAGTGCTTTGA CCTTTGATCCTGTCTTCGTAGTGAACAGAATTTAATATTGTTATTATTATTATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds