Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991767.1 PREDICTED: Strongylocentrotus purpuratus testis-expressed protein 2 (LOC752260), transcript variant X1, mRNA TAATATCTGTGTTTTGATGTGATCACCTTTCGTCGATGCCGAAAACTGCTGTAAAACGTTGCAAATTACC CTAGCTTCTCTGAGACTATAATGAATAAGGCTTCTGATAGATATGCGACTGGAATTTAAGTTTTTGTTAG GTATGACAAACTGATGAAAAGAAGATGAGTACTGAAAAGAAACCAAAGCCTCCCAGGCCACCTGCACCCA ACCTGGCTGCAAAGAAGAGCATCAAGAAACAAGCATCGTCTGGGTTGTCCTTTAGCTTCAATGACTTGAA GGCAGTGGACAGCGATGAAGAAGACAAGAGTTTTGCTCGCTTCACGAAACCTGAACGGGACGATCCCTTG TCCGACCCGACAAAGATTAAAGAGATGAAGCCCTTGACAAATACTAACCATGACCTCAAAACCAAAGAGA TGAAACCTTTGACTCATTCTAACAACGGTGCCACATCTGGAGAGTTCCGACCTTTGCAGAAGGAAGACAA AGACTCATCGTTTGAGGACATCTTTGATGCTGTCAATCGTCTCCCAAGTTCTAAGCCGATAGCCGTGTCA AAACCTGTTACAGAGCAGGTTAAAAAGGTGCAAGAGGAGGTTAAAAGAACAAGATCATCGCCTCCAAGAA GTAGTGGCAACACTGAGAACAGGGAAAGTGATGGCATAAAAAATAAACCAAAGCTCCAGAAGGGAGGGTC AGGCATTTTGAGAGTAGCAACAGAAGTCCTTGAGGAGAAAGAAAATGAATCCTACCAGTTGCCATCAGAT TCACAAGAGGCCCTTGCAGATCCTCTGAGCTTCCTTGACAAAGTCATGGAAGACCAACTAGAAAGTAGCT TTGACGATGATGATAATGTCCTTGAAAAGGGTGGTCATGTGAGAAAGAGGAGACAAAGTGGGAATGGCAA GAAGAAGGTCCTTCAACAGCAGCCACGTACTAAGAGCTTGGATGCAGATATCAATCAGAGCAGTTCTAAG GTGGAGCACGAGGACTCGATGGATATCAATCCTTGCTACTTCAATGTCCCTACCCCAGCAGAGCTCAAGG ATGAACCCACAAGACGACCAGACAGCATTCCCAACTCTCGATCAGGTCCAAAGTCTCAAGCCAAAGGGAT ATCTCTCTCTGGTCTTCTAGCCTCCCCAGACATCACAGAAGAAGACAACGACAAGCCAAGCACCAATGTC AACTCAGATGGCTTCCGAACTCCAGACATGCCTCCGGATGACACCGATTGGGTGACCATAGAAAAGAAGC CTCATGCAGGCACATCTAGCCCTCCTCCATCATCCAATCAGCTCCTGTCACCGGAAGAAGAGAACAAAAC TGTCAAAGCAACTCCTCAAGGTCTCTTCCCATCCTTGCCCTTCTACACCCTCTATACCCTCACATTCCTA ACCTTTCTGTACTTCATGTTCCCTCTGCCGACCTACATCACTGGCTTCCTAACCGGTCTCCTGTGTTCCT TCTACCTTGTGCTGTTCTTGATCTGGATGAACCTGCCACCGACGGACAAGTCTTTCAAGGAGACGGAGGG TTCTGGTGGGGGCCCTCCTCTTGTCATCCCAGGGCCTCGCCTGACCGCATCCAAGATCAGGTCCAAAGAA CAAGAGAAAGTCACCTTGAAGGGCTGGATGAATGAGTTAACCACACCCTATGATCCGGAGACCTATCACG TCAATCAAACACATTCCATCTATGTGCGCCTCGAAGGCCACAGCCTGAGACTGTCCAAACCAAAGCAGAA TATAGCCCGTAGGTCCATGTTTGACGAGCCTACACCCCGTCCAGAGTTCATTCACCAACGTATCTACGAC ATACGGGGAAGCCACGTGTACCTTCAACCCGAGGGTCTCGTGAAGAAGCGCTTATGGAGTAAGAAATACC CGCTATTCATAGAGTTACCAAAGAAAGGGATTTCGGTTGAGAAGAAGGATGTCTCGCCTCCGGACGATGA AGCAGCTCAGGGCTTGGGCTTTGATGTCATCAAGAAAGACGAATGCGACGACAAAGTCTTGGTGTTGTTT GCGAGGACAGGTCGTGAGAAAGAAGAATGGTTTTGGAAATTTGAAGCAGCGTCCCTCGCTACCAAGGTCC GTCCAATCCAAACACTTCACAAGAAGGTGTTTCTCATCGGGAACGACATCATCGGGGAAGACGGGAACCC GATGTACAGGGTGGACCCTGACGACATGACGTCCCGCAAGTCCATGGTGGACTTCTACAAGTTCCTTGCC AAGGTGATGCCCAAGGAGAAGGATGTCAAGGAGCTCCTCGTCCAGGACGTGAAGGCCAAGGCTGGAGGTG TGACCTACGCCAGCCCTGGTCGTCGACCAGGGAAGAGCGGATCAGAGCGGGAGATGAGTAGCATACCCGG TGCAATCAGCAACGATGCTCCGGTAGCTTGGGTCAATGCTTTTATAGGAAGGTTCTTCTGGGACTTCTTG AGAGAACAACAGTGGGCGGACCTCATCCAGACTAAACTACAAAAGAAGCTTTCCAAGTTAAAGATACCCC ACTTCATGGAGGCCCTGACCATCACCGGGACGGACCTGGGACTCAACGCTCCCACGATACGCAAGGCATC CAAGCCCACGGTGGACTCTAGGGGCATGTGGGTGGATCTGGAGATGCACTACGGTGGCTCCTGCTGGATG ACGCTCTCCACCAAGTTTAACCTGTGGAAGCTGGGCAAGGACACCCGCATGGAGAGGGAGATGGAGGACC TCATGTCCGGCAAGAAGGAGGGTATCGAGAAGCTGGAAAGCACTACAATGTACTCCAGCAAAACAGGCAG TGCTGCCATTTCTAACAAAAAGCATGCTTTAGGCAACCCTGGTTACCCATCCCCTACTACTACTGTACGT AGTAAAGACAGGAGGCAGATGTCTGCTGCCCTCGACAGTGAAGAGGAGGACAGTGCGGAGTCCTCGGATG ATGAGGTGGCGGAGGAGACAAACAGTACTACTAGCAGCAATGATGCAGGACTCGCAGAAGACGGAACTCG TAGCTCCAGCAAGATACTGAGGTTTGTGAACAAGGTTGCCAACTCAAACTACTTCCAGAGGGCCACGCAG AATAAGTACGTCAAGCGAGCCTTCAACGAAGTGTCTAACACCGCAGTGGAGCTCACAGTGGAGGTGAAGG AACTGAGAGGAGTGCTGACTGTGAACATTCCACCACCGCCATCTGATAGAGTATGGTATGGATTCCGTGG GAAGCCTCACCTGTGGTTGTCAGCCAAGCCTAAGCTAGGGACGAGACAGGTCACCATCACACACATCACC GAGTACATCGAGAAGAAACTAGAGAAAGAGTTTCAGAGAGTCTTTGTGCTGCCCAACATGGACGACATAC CCATGCCAATCATGAACTTTGACGTTGAGGAGCATCGCTTTGCCAGATGATGAATCACCCAGCCTCGGCC CCCTTGGACTCCCCCCGCCCTCGCCCCGGAGGGTCAGTATGTCCCTCTCCATCTCTCAGCCCCCATTGGT CAACGTTTCCAGACAGCAGATGGACGCATCGTATTGTGACAAAAGTCAACTGCAGCAGTGTGCTTGTTCC ATTCTGCCAACCGACGTGGACGAAGGGTTAAACCCCCTACAGCTTGGACGACCCCAGTATAGCTTCCCAA GTGAGCTGCCAAAGGGATTTAACTCAACCAAGTACCAAGGACGCACACCAAATCATCAGCTGAGAGCCAG AAGGGCGTTAAGTGCTATCGTTGGACACAGTAAATGCCTTTTTTGCTCCCAACGAACAAAGCATGCTGTG CGTCATTTAATTTTGAACGAATTAAGAAGATTGCAATCGATTGTGTACAATAGAAATGGAGGAAATAATT ATAATTGTTACATCTATGCTTCGAAGTGTCCACCTTATGAGGACATGATTGATATGAGGTAGGAATATAG AACATAGGGGAGTAAAAACAGATAAAATGATAGATGGAAGAATACAAGAATATCAATATTAGAAGAAGAA AAAATCAGATAACAGGGCAATGAAAGCTAGTAAAAACCTACGGTCATTGTGTTTTTAAATAGTTATAAAA TAGTAAGGAGCTTGAAAGGCTACATGAAAAATACCTAGCTAAAAAAAAAATATTAAAAAATGGCCTAAGT ATCCATGAACTGAATGCTATTAAAGAAGCTTGATAGTGGAGTTATATTGTGTCGAAATTTTTCGGTTGAA ATGCTGAAAATACATACAAAGAGTAAAAGCTCAAATATACCTTCCAGTTCCTGCCAGCCATCTTTGCACC TAATATTCATAATCATCTTCATAATATGGTATTTCCACAGTTAGATTTGAAGGATAGCAGCTTCCACATT TCTGTGACATACCCATTTCAACCCATTGCCTGTGGGAACCAAGGCCCTGTTTCACAAAACTTGAAATCAA TAACAAGTTACAAGCTACTGTTATAAGCTACTGAAATCATGGCATCTGATTGGCTGAGAGAAAATTTGTT ATAGATAACAAGTTTTATGAAACGGGGGCCCCTGGTGATTCTTGTATGAAGCGTATGGGAAGGAAAGAAT GTGGTAGCCAATGGGCTAAAGAAGCCCCGAGTAGGCCAAATGTTTGCAGAAAACAGAGGAATGGGGGGCA TGTTTGAAAGCTTTAAAGCCTGTCTGTACTAGTTTGGCCTGGGGGATTAGACCTCCCTGCAAGGTCACTG ACACATGGTTATCTCATCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
