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Echinobase Accession
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Echinobase Accession
Anatomy Items
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038222044.1 PREDICTED: Patiria miniata tetratricopeptide repeat protein 21B-like (LOC119745584), transcript variant X1, mRNA TGCCTGGATCCTATCAACACATTTTTGTGTGAAAAATGAAGTCGCCGGAATAGCATGCAGTAGTTGGACT TTAAAATTTAACAGCAGTTGTGCACCATTTATCTGATTTTTACCTCTACAAATCAAATACATAAGTTTTA TGGCAGAGGGTGACGTCGTGGCTTGATCTCACTGCATTGCAACATTGAAAACAGCATTCACCATGGCAGA TACTGATTCCACCACGCTGGCCGCCATCAACTACTACTGCCAGGAGAAACTCTATCGCCACATGCAGACA GTGGCGCTGGAAGCTATCAAGAAATACGGTGCTGACCCCATCTTGCAGTTCTTCAAGACATATGGCCTCA TACTCGAAGACCGTATCGCTGAGGGTATGCGTGAGCTGGAATCCATCAAGGACAAGCCAGATCTGATCCT GTGCACCACCATGGCGCTCATGTATTCCCACAAGAGATGCAAGACGGTTGATCGAGAGGCAGTCCAGGAT CTGGACGCCAAACTGAAGGAGGAGAGAAAACGGACCGGGGAGAAGGGTCTGTACTTTGCGGCTACATTTC TGTGGCATACAGGACGACACGACAAGGCTCGAGAGTATGTGGATAGAATGCTGAAGATGTCACAGGGAGC AAAACAGGGCCAGGTTCTTCGAGGCTGGATTGATCTGACCTGCGGCAGGGATGCCTACGTCAAAAAGTCT GGCAAATATTTTGAAGAGGCACTGAGTGGGGCATCCAAGGACGTAGAGGCGCTGATTGGCAAAGCTCGTT ACTTCACCCTGAGGCACAACTACAGCGGCGCATTGGACCAGATCAACCAAGCGGTGGTGTCCTACCCTGG GTTCATGCCGGCACTGATTGAGAAGATGAGACTCCTAATGGCGCTGCAGGATTGGGACCAGACTGTGGAG ACTGCTCAAAGGGCTTTGAGTCAACAGTCCAGCTGCCTTGAAGCCATCAGAATGGAGATTCTACATATAC TGTGCAGAGACGGAAAATACGAAGAGGCTGTGCTTCGTCTTGGGGAGTTGATTCAGTTGTTGGACCGGTT TGAGCCCAAGAATGGCTACATTTGCTGGCATTTGTCACTGGTCTACAGCAGAGTGTGTGGTCGCAACACC CAGGTCCTACAGCAGACCACTACCATGGTAGAGCGTGCGGTGGCGCTTGAACCAAACAACGCAGATTACA AGACAGAGCTAGGCTACCAACTGCTCCTCAAGAACAAGCCGCGAGACGCCATGAAGTACTACCGCAGCGC TATGAAACTTGACGAGACTAGTGTTGCTGCCCTCACAGGCATCATCAAGTGCCAGCTTCTTGAGGACCAT CTTGACGATGCTGAGCAGCAGCTGGAGTTTCTCAGCGAGATTCAGGAATCCATCGGCAAATCGGCGGACA TTTTGTTCCTGCGTGCCATACTGGCCCACAAGCGAGCCAAGCCCACTGAGGAGGTAGTGGCCCTACTCAA CGATGCCAGCACCACCCACTTCACTGCATTGAAGGGCATCCCGCTGGGTATCGACTACTACTCCCAGATG AACCCAGACTTTGTGCTGGAGTTGGTCAAGGAGTATCTGGCGTTTGCTCCCACGGAGCCCCAGGCAGCTG GCCAGCCAGTCAGTCCCATCCTGAGCCGATGTGCCTCCATCCTAGAGCCCATCACCAAGGCCATGCCTGG CCTGCTGGAAGCCTTACATCTCCTGAGTCGCATCCGATTCCTGTCCGGTCAGATCGACATGGCACAGAGC AGCCTCCAGCTCTGCCTGGATCGAAACCCGCAATTTTCTGACGCTCACCTACTCATGGCCCAGATTCATC TGCATGCTGGCAACTACAAGCAGTCCTCCCAGTCCCTGGAGATGGGACTCAGCTACAATTTTGAGGTGAG GGAGATGCCGCTATACCACATGATCAAGGCTAAGGCCCAACGCAAACTCAACCAGCTGGATGAGTGCATC AAGACGCTGCAGAGTGCCATGCAACTACCAGGAGTCAAACAGAGGGCGGCCTCCGCCTCCAAAAGGGGTG GTAAAGTCCGTCCCATCGCAGCCAGTGACCGAGTGTCTGTGTATTTGGAGCTGGCTGAGGCATACAGACT TACTGATTCCCAGCATGAAGCAGCGAAGGTGATGCAAGATGCTATCAATGAGTTTGGCGGTACACCAGAG GAGGTGCGTGTGACCATCGCCAACGCTGATCTAGCCCTAGCTAGGGGAGACACGGAGCTAGCACTGTCTA TGCTGAGGAACGTCGGCCAAAACCAGAGTTATTTCATTCAAGCACGAGTCAAGATGGCCGACATCTACCT GAATCACCGCAAAGACAAACGACTGTATGCAGGCTGCTACAGGGAGCTGGTAGAGAAGCAACCAAGCCCC GAGACCTCTTTACTCCTGGGGGATGCCTACCTGAACATTCAAGAGCCGGAGAAGGCCATCGAGATCTACG AGGCTGCCTTGAAGAAGAACCCGCGTGATAGCGCCCTCGCCAGCAAGATCGGCTCAGCGTTGATTAAGAC GCATCAATATACGAAGGCCATCAATTATTACGAGGCGGCATTGAAGACAGGAGGGCAGGCTTTCCTACGT TATGACCTGGCCAATTTACTGCTGAAACTGAGACACTTTGAGAAGGCGGAGAAGGTCCTAAGAACGGCCC TGGATCATGAATCGGCTTCTGACGTGTCTACCATGATGGACGACTGCAAATTGTTGGTGATGCTGGCCAA AGTTCATCGCCACGCCAACAAGATGGAGGACTCCATGCTGGCTCTCACGAAGGCCCGAGACATGCAAGCC AGGATCCTGAAGCGTGTGCAAGTTGAGCAGCCAGACGCAGTGTCTACTCAAAAAGCACTCGCTACAAGCA TCTGTTCCCAGATGGCAGAGCACCATGCCACCCAGCGAGACTATGAACGAGCCATTAAGCTGTACAAAGA AGCCCTAGTCTACACGGACAGCGACGGTAAAGCCATGCTGGAGCTAGCTAGGCTGTACCTGGCAACAGAT GAGGTGGATGCTTGCCAACATCAGCTGGTTCAGCTGCTACAAGGGGACAAGGAGAACGATAACGCTACTG TGATGATGGCTGATTTGATGTTTAGGAAGGGAGAGTACGATCAAGCAACGTTTCACTTCCGGCAGCTGCT GCAGCGGTCTCCTGATCACTACGAGGCCCTGTCCAGACTGGTTGATCTGCTACGCCGTGCAGGCAAGTTG GAAGACGTGGCTCAGTTCTTGGAGCAAGCTGAGAAGGCATCGTCTAGAGCCGCCATGGATCCAGGCTTCA ACTACTGCAAGGGACTGTATGAATGGTATATTGGCAATCCCAACGTCGCCGTGAAGCATTTCAACATGGC CCGCAAGGATAGCGAGTGGGGTCGTCTGGCCGTCCGTAACATGATAGACATCTGCATCAACCCAGACAAT GAGACACTGGGAGGGGAAACGTTTGAAACTGTCAACACTGACGCTGCGAGTGCCTCCGAAAAAGCGGACT CGGAGCAGATGGCCGTAAGAACCGCCGAGAAATTCATCAAGGAATTGAAACCTGTGCCAGGGTCGGACGA CCACAAGATCATGGAGAACTACGTCCTGATGGCATCCAAGTCTAAACCCAACACGGAGAAAGCCTTGTCA TCGTTCATGGAGATGGCAACCAGCGAGAAGGAGAATGTCCCCGCACTGTTTGGTGTGGCCACGGCTTACA TGATACTCAAGCAGACGCCCAGGGCTCGCAATCAACTCAAGAGAATTGCTAAGATGAACTGGAACCCGGT GGACGCAGAAGACTTTGAGAAGAGCTGGCTTCTGCTCGCCGATATCTACATCAACACTGGAAAGTTTGAC ATGGCAACAGAACTACTCAGGAAATGCCTTCAACACAATCAGTCATGTTGCAAGGCTTACGAGTACTTAG GCTTTATCATGGAGAAAGAGCAGTCGTACCACGACGCAGCGCTCAATTACGAGAAATCCTGGAAGTATGG TAACCAGAATAACCCAACCATCGGTTACAAGCTGGCATTCAACTACTTGAAGGCAAAGCGATATGTGGAC GCTATCGACATTTGTCACAAGGTCCTAGCAAGCCATCCCAACTATCCTAAGATGCGTAAGGACATCCTGG ACAAGGCGCGGGCCAGTATACGGATTTGAGGATGGATCACAACAGTCTGGGCAAAACAGAAAGACAAGTT GCAAGGTCCCGAGTCTCACCGAACCAAAGCGTATTTATGGTCGACACAAATAGAATTTGGTTTCAGGCAA ACTTTACGTATCAATTTTTCATTAAATGGATTTTAGATTTGTTTCGAATGACTGCAACCGTTGATCTTGT GCATGTGGTCGTTCGTAATTGTTTAAAACCTCACATTTTGGAATAATTTGGTTCTGCTTAACTCTGGTAT GCCAGTGTTAAATGAGTGTTTGAGTTTGATATTCAGGGATGATATTGGGGTCGAAAATTGAAAATCCACG AACAACATCGGTGTACGGTTCATTCATGTATTTGCCGCAACAGGCACTCCTAAAAACTGCCCACTGCAAT TCTTTCATCCCAGAAAAAAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
