Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041610870.1 PREDICTED: Lytechinus variegatus pumilio homolog 2-like (LOC121417224), transcript variant X3, mRNA CCGATTTTGGTCAAGCACATGGCACCCATAATGCACTACGGTTCAAAATGTCGCCCGCTGCTGCCGCAGC TATGATTGTCGAAATGTTGTCATAATCGGGCTGCATCGCAGCCTAATGTGTGGTGCCTGCATATATATAT ATTGTACATAGCTTCAGCAGGACACGACAAGCAGCGGGTCTGTATCAGAAAGAAAGAAAATGAATGATGT TGCATGGGAGAATTCTGCACGTAATAACAACAGCGGTGGTAGTCAAGCACTTTCCAACAGCAGCGGCGTG AGACAAGGATACAATCGTATGGCACAGCCACAGCGCACGAGAGACGACGCACAAGTAGGTTATTTCTACC AGAGGCCCAGCAACACCATGAACGAATCAGGAGGGCAGTTCAAGCAGAGATGGGCCGTAGGGGACGACTC TGTCCTTGATCAGGTCCGCTCTGCGGGAGATGTGAATAGGATGACGAATGAGTTCCATGCCCTGGATCTA GACCGGGACAGTAGGCCTAGGAATATGGATGAGAAATTATGGGATGCCCAGGAGAACAATAAAAATGAGG ATATCTTCAATCAGTGGCCGGCACCTAATGCCTGGGTGGGAGGAACGGGAATAACTGGTTCCAACCATTC AGTGTCCCAGCCCATCATGGTGCAGCAGAGACGGCAGCTCTCTCCCAGCACAGGGACCTTCCAGGGTCAA GAGAATGCAGTCATGTCCCCTCGCTCAGACACCAGTGGTCTCGGGCTAAGCATGGCGGAATACGTCTTGG CCTCCTCTCCTCAGGGAAAAGATATTGAAGGCAAACATCACAGGCTCAAGCCAGGATTTATCAATCAAGT GCCGGATGGAAGTGGAGGGCAACATCAGCCAGGAGGTGATTCCAACCAGCAGCCTCAACCCAACAATGGC AAGAAGAGCAAGACACCATCGCCCTTTGAAGCAGAAGGAGATAAGCAGGAAGTTGTAGAGAATGGCATAG ATCCCGTACCACAACAAAAACCGGAAGAGGATCCCAATGCATTCAGTCGGACACCTGGTAGCCGCAATGC ATCCCCAACAGAGCAAGAGGAGAGTAAGAACGCAGCGATGCAGCAGCCAGCGACATCGACGGCTGATATG CAACGCCAGAACATGATCCCAAAGGTTCATCAGCAGCACCATCCCCAGCATCCGCAGCACCAGCAACCAT CTGAAGGTGCCTACATCGAGGGCGGTGTTCAGAATCCCTTGCAGATAGACACCGGGGCTGGAATGGAGAA CGTCGGGGGCATGGAAGGGCTGCAGTTTGACTACTCGGCAGGAAACCAAATGGCTCACAGCATGGACAGC CCAAGTTATATCAATTATGACCAATCCCAGCAAATGTTTCAGCAACGTCAACCAACCCCTCAAACCATAG CAGTTCAACAGCTTACCCCACAACAGCAGTATGCTCTAGCTGCTGCACAACAACAACAACTTGCCCTGGC AGCCAACCCGTACATCATCGCTGGAGCAGCTCCTACAGCCCAGGATCCCTATGCTCTTGGTATTGCAACT GTTACAGGAGCTCCTGCAGTGATGCCTCCCCAGTATGCTTACGGTGTGACACCATGGAGTACAGTCTACC CCGTCGGCCTGTTACCGCCTGGATTGCAACAGCAACAAGCTGCTGCAGCGGCTAACCAACAAGCTCAACA GCAGGGTGGCCAGGGACAACAGCAGAGGGCACAGAATGGTGGACGTCCTATGACCCCATCCCAGCAACAG CAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAACAACAGCAACAAC AACAGCAGCAGCAGCAACAACAACAACAGCAAGCTGGAACACCACAGGGTCAGGGAGAACAGATGGCAGG TCAGCCAGGAGCTCAGCAGGGGATGCCTTTCCCAGCAGCTGGCTATCAGGTGATCACCTACTATGACCAG ACAGGAGCCCTTATCAATCTAGGCCAGAGACCAGGCATGGGAGCACCTGTCAGGCTGGTCTCTCCTGCAC CTGTTATTGTCAGTGGTGCTCAAACAGTTCAAGCGAATGGATTCACCGGTACCAATGGTAACTTCCGTAT GGTGGGCACCCAACCTCAGCAGCAGCCCCAACCTCAGCCCCAGCAGGCCCAAGGACAGGGCCATAATGCT GCTTCCATGTCCCTTTACACCAACAGCCCTCAGATGGCTTCCAACCAGCAGAACAACGGCGGTGGACTTG GCTCCTACGCTGGCCAGAGTAGCTCTGTCTTCAACAGTGGTCTAAGTGGATCCGGTGCGGACACCCCTAT CCAGCGTCGTGATTCACTGGGTGGAGGATCAGACTACAAGAGATCATTGGGAATGAGTCAATTCTATGGG AGCTCACCCCAGCTTGGTCCTATCATCTCTCCTACACACACTGGTGGATCCTTGACACCTCCTCCATCGC AAAACATTGGCCTTGGATTGACCGACTTTGGTGGAGAAGTGAAATACAGGAGTGGATCAACGTCCTCTAG TACCAGTGGATCAGGATGGGGCTCCAACACCCTGTTCCCTCCCCGCAGCCTTCGCAGCACCGCCTACATG GAGAAGAGTGCACCTGGTCGTAGTAGACTCCTGGAGGACTTCCGCAACAATCGCTTCCCTAATCTGCAGC TCCGTGACCTCGTCAGCCACATCGTGGAGTTCTCTCAGGATCAACACGGATCCCGCTTCATACAGCAGAA GCTGGAGCGTGCCACTCCAACAGAACGTCAGATGGTCTTCAGTGAAATCTTGGGGGCGGCCTACAGCCTG ATGACCGATGTGTTTGGCAACTACGTCATCCAGAAGTTCTTTGAGTTTGGTCTCCCTGAGCAGAAGCAGG CTCTTGCCCAGCGTATCAGGGGCCATGTGTTACCCCTCGCCCTTCAGATGTATGGGTGCAGGGTGATACA GAAAGCCCTTGAGTCTATCCCACCTGAACTACAGGTTGAGATGGTGAAGGAGCTCGACGGTCATGTTCTC AAGTGTGTCAAGGATCAGAATGGCAACCATGTCGTACAGAAGTGTATCGAGTGTGTAGAACCTCAGGCCC TCCAGTTCATTGTAGATGCCTTCAGGGGACAGGTGTATTCACTGTCAACACACCCCTATGGCTGCCGTGT GATCCAGCGTATCTTGGAGCACTGTATCGTTGAACAGACCAAACCTCTGCTCGATGAACTTCATCAACAG ACAGAGAGCCTTGTACAAGACCAGTATGGCAACTATGTCATTCAGCATGTGTTGGAACATGGTAGACCTG AAGACAAGAGTAAGATTGTTTCAGAGATGAGAGGCAAGGTCCTTGTTCTTAGTCAGCACAAGTTTGCCAG TAACGTGGTTGAGAAGTGCATCACTCACTCTTCACGACCTGAGAGGGCGCTACTCATCGATGAAGTCTGC TCCTACAATGATGGTGCCCTCTACACCATGATGAAAGACCAGTATGCCAACTACGTTGTGCAGAAGATGA TTGATGTATCCGAGCCCAACCAACGCAAGGTCCTCATGCACAAGATCCGTCCGTACGTGGCCTCGCTGCG CAAGTACACCTACGGCAAACACATCTTGGCCAAGCTTGAGAAGTTCTTCATGAAGAACAACGACTTGGGA CCCATCGGTGGACCAACCAATGGTACCTTGTAGGTACCCGCTGTTGCTATGCCAGGGACGAGACAATCGT TTATCAGAGTTCAATGCCATGAAGTAATTTCATTATTTTCCCTTATTTTCATCAATTAAAATTCATCTAT ATTTTGTTGGAATCAGCGATTTTGAAATACCTCAGATTACTCATTTACTCCTGGTGAATATTTTCTCCCC AAAATTTATGTAAATATATTTTTTTCGTGATACGAGATTTGTATAAAACAGCTGTAAAGACAAATAAAAA AAATGAATATCTTTATTCTCAGAACCCTTCAAACAGAGGATGCTAGTATACTGTTTGCCCATAACAAACA TTTGTCTCGTTCTTGAGCATATGATCAATGGTGTGTTTTGCACTTTGAAGTTGAGAAAAAAAAAACATTA TTAAAAAGAAAAAAATTACCTTTTATGCTATTAACTGCAGGCAAAGGGTAGGATCACTAATGATTGATAT TACATCAATGTATTGATTTTAAAAAAAAAGGTGAATCCTTTGTGATTTAACGAGAGTAGGAGAAATGAAA TTGATATTAATCAATAAGATGCGAATAAAGTACTCTCATCGATGTGAAATGAATGGAGTAATGTATATCT GACCCATTGGTGACCCATGATACTGCTGAGCGGATATTGGGTTTCTTGAAGGTCAGTTATACCACCCAAG TACCCTGCCCTCTGCCTGCCTTCAAATTCTGCTCAACTATACTACTCTAGAATGCATGCAGTTTTAGTGT CAAAAACATTTGAAAATAAGGAGAAAATATGTCGATGTTTTTCAACTTTAAAGAAAGCTTTTCTCTACTG AAGGTATTTTCCTGGATTGAAGCTAGCTGTTAGTATAGGGACCATGATATGAACGTCCACAGTAGTCATG TAGTCTTTGAAATTTCAATATTTTGCAGTGGACTCTGTTGTGTTTTTGATTACATATTATATATATATAT ACATACATATTCCTTGAATATCAGAACGTAGTAGCTTAGTATGAGAGTTTAAATCTCACGTTATTGGTGG ATGGACTAGCAGAAATTGTGTTTGTATTTCTTCTGTGAAAATTGTATTTAGCATGATACATATTTAGCAT TATGAAAATTTATTGCATGAATTTCTTGATATTTGTATAAATTTAAAAGTGGAAATGTAATATGAAGTCT GTTTGAATATGACAAATAATTGTATGATATACATTATTTTTTAGGCATTTAATACTTTGCTCTTTGTTAA TTATTTTTCCTTTTTGAGGGTTTTGTACTTTACTTTGCATTATATGTATGTATCTTGGTGTATCTAGCTA TTGTATTTCTATTGTAAATTGGCTTGATAATTTAATGGCATTTTTAAAATAGTTTAAGTAGGCACTTAGC CAATAGCCAACATGGGAAATATAAACCTGATGTACATTACTCATACCATGATATAAGCCACACATTTTTG CCATTTTATCATTATCTTGGCACTGCTAAACCTGACTTTCCCCCCACATTAAGCTTTCCATAGTCCTATT TATTATGAAGTGCTTTTACATTTGGTGAAAGGACCTTGCGTTGAGTGCATGGTTTCTTTTATGAGAATTA TGTTTGGTGTAATGAGATTCACATCACGTGGTGTTTGGTGATTAGATGTATAAAGGGATCAATTTGTGTC AGTTTTAGCTCTTTAAATGTGAGTGACCACTCGTCTGGACCTGTACAATGAAACTAAGCGATTGATCATT GGGGCTTAATCCTGCGATCGATCATACACAATAGTCTATGGAATCAATCGTAGGTGTCAGTCCCATGATC ACTCGCTAAGTTTGATGTCACTGGGCCCTGATTACACCAAACCTCTCTCTCTCATGTGTGAGCCCTATAG GTCAATCAGTAGAGCAGGTAATCGAGTCAAATAAAATGTAAATATGACATCATTGCTTTGCAAAACACGT ACATAAAAGACATCCTGTGAACATAATGAAGGGTGAAAAAAAAATGATTTAGGGAAAATTTGTGCTTATT GCCCAACTAAGCCCTCTGAAATGTCTTCCAATGTGTGCCTTCTGATAGGCAAAGAAAAAAAAAAGAAAGG AAAAATAAAGGAAATGTATGGTTCTGATGGGTAGGAAAATATAACCCTTTGAGAAAATGATTTGAACGCT ATATTGCCCTTTATAAAATGGGCTGTATCTCTTGTAATTATTGTAAAATAGACAGAGTACATATTGTAAA GATTTTTTTCCTCTCTCTTTATCTCTCTGGACTCTATTTAATATTGGAGGAAACATCAGTGTCCTTCCAA ATTCCTTTCAAAGACTAAACTGTATGCATCTTGATTGTACAAATTACAGAATGAGAAGAGAGTAGTAGTG CACAGTCATTCATCTCAGAAAGGTTGTTAGATTCCTGTACATATCTCTTCTAGGTCTGGGCTGCAAAGAC TAGGAAAAATATAATGTATACCTCACTTTTTCAAACAACAATCTCTGTTTAGTAAGGAACTAATGTTGTC GGAAAAAAAATGAATCCAACGATGATACCATGATAATTCCTACCTACCTTGTAACTCCCGAGACATCAAT TAGTGGTTTGAATTGTAAATAGATGACACCGTGATCACACCAATGAGTGTAATGCTTATGCAGGAGGGGT TATGGCTCGGTGCATGTATATATACATAGACCATACGGTTTTGTTGGACATGTACAGCATATGAATATTA TTCTGAGTCTGGCTATATGTACAGCAAAAGTAAAGCAACTCTTAACAAGACCCATTATAAACCTACCGAG GCCAGCATACAGCTTGTATGAACATATACACCTGCATCAAAGACAGGACATCATTATCACCATACAGAAG GAAAACAATTATTTGTACAGATTGTGTGTAACATGTAAATTCTCTTTTTATTTTTATTTTTTTTTACTCT GTAATTGTATAGGATCATTGTAAAGTTAAACCCCCAATTGCAATCATGTGCTTATCATCGAAATGATTTC TGCTCTTCCCTGGTTGCGGTTTGAAGGCTTAATTGTGGAGAGATATTGGGTGTGTGCGCTGAACTAAGTC GGTAGTTTGGAATGCCTCTGTGTAAATCCTGTGTTTGGGGATGTTTGAATGAAGGCTAGCGTCTGGCCGT CAGGTTCATATCTAGACCTAACATGTGGGGAGGCTGCTTGGAAAGGAACTAAAGCAAAATGGAATTGAAA TACTTTTTTTTTTAAACACAGGTATCGCAACATGATGTAAAAAAAAAATGGTTTTACTTTCTTTTTATTA TCATTTTTTGAAGAAAACACTCTTACTTGATCTAGAATTCTTAAATTTTTTGTCCTTGCCATATCTTTAA CTTTTAAATATTTTATGGTGCTTTTAAAACTTTTTTCTGTTTTAAAATTCCCCTCAAGAAAAGAAAGTAT AGTCATTGAGAAAATGCAAACTTATATAAAAGCATTGATGTAAAAAATAGTAAATAGTTTATAGAATTTG TAAATTACAAAGATTACTTGCACATAATCTCCACTAAAGATGTTGGACTTGTGACATAATGTAAAAAAGG GACAAATTGTAAAAGCTTTCTTACACTTTTTTTTATTGTAAAGAAACCGGTAAAATGTTTTTCTTCGTTC GAGAATGACCTGCTGCTCTGTGCATAGTGTTCTGATGGAAAATAATGTTCTTAACCCATTTTTGAAGGGT GCATGTATTAGAGACCAAAATGAAAAATGAGTAACATCATGTATGACCATGTACATCAACACACAGAGGT CAATATGTAAATAAGACTTTATTTCCAGATTACAAAGTATAGTTTTTCATTTGTGTAATTATTTTGTAAT TAAATGTAAAGGCATACTCACTCCCAGTTTACAATTCCCTTGACAAATGTATAAAAGACAAAGACTATCG ACTCGCTTGAAATTTGTGTAGAGAATGTACAGAAACTCTGATTTTGGATTTAAAGAGACTGACCCACTTG TACATATAGATTATTACGCAACTGATGAAAATATTGGGGTTTTGAACGTCTTATTTTCATGGAAAAAGTT GAAAACTTTTACTGGCGTTGCTCATTTTGAAATTTTTGTAAAGAAAGAAAATAACAAAAGACTGGAAAGC AGCTTTGCAATGTAATTATTTTTTATTCTTCCTTTGTGCAAGTCTTCAACCATGAGCTAAATCTAAAGAT CTCTTGTAATATGAAACTGAATTGTGCTTATGGAGCATGTAAATTATGTAAGATAAAGGAAATGCAGTAG TCCATGATACTATTGAATATTACAATTCATTTTTCACCATGATGGCAATTATGTAAGTAAAGGGTTTTGT GCAGATTTGACCGTCATAGTGGCCACCTTTCATCATGGCATTTTGTATATTCTCATAAATTATGATTATT AAACGCTCTATGACGAGGGAATTTACTGCAATTTTTTCAGATCATTTTATACTGCACGCAATTTTATATT GGATAATTTGTTTGAATTTACAAGTGTCGCCCGTGTATAAAGGGGAATGTGTAAAGGCCGAATGTGATGT ATTTTGTCCATTTTAATTTATTTCAAAAAAAAGAAAATGAATTGGTTTATTTCAGTTTTAGAATTGTGAA CAGAATATCAATATGGTAGCATTTTTTGGTGTGATCATGTATTATGTATTTATCCATATATGGATTTGTA ATTTTGATGTAGATTTTGTCCAAAGGAAAGATAACTAGCGCAGGAAATGTTCCCTATTATGAAAAAAGTG TACATTTGTACAGTAGCAAGTGTAAATTTCAGAGAACACTTTATTTGTTTTATTTCTGTACAAATGTTTA TGTTTTACATCCCTCCTCATGTACACAAAATTGTGAAATAGAATTGGCCCTCTATATATGTTGTACTTTT CTGAATGATATTTGTGTATTGGTCCGAAGTCGAGTGTATTCATCCGTTTGTAAAGTAGCTGATTGTAAAC TTTTTTTGTCCTAAGGTACAAGCTTTTTGAGATTATGTTTAAAATGAAAGCAAACAAAATTGTGCAAACA AATAAAATTAGTAATTTGTAGAAAACCAGATTTCCAAGTATACATCATTATTGTTACTTCAAGTTGGTAT GTAAGTTTTCTTGTGGGATAAAAAAAAGATTGTTATTACTGATTTCTATGTTCTTGACAAATAAACAAAA ATAAAAATTAGACACAATAAGTTAGTATCCAAGGGGAAAAAAGTCTGAAAGTGAGCTTTACAAAAATGGT TGACTTGCTATGAAAGTCTCTAGCTGTCAATTATGATAAAATGTTTTGAAGGAATCAAAGCATATAACAT TGATGTTGAAAAATAGCGGTTTATAAATTCTCATGGAAATTTGTTCATTTGTATTGATATAGTCAATTTC TTTCTTGGATAATCTGAATTTACAATCTTGATTTATTTCTCTCTTTCCCTTCATCAATGTTTGGTCAATC CATATCGTGTGCATGTCATTTGGTGTAAATTGCCTGCATGAAACTAGAAATGTCTTGTTTTAAATATTTT TATGTGAATATCTCTTTTTCATGGATTTTTATTATTCTATCATTGCATATTTTCATTATTTTTTGGTGCG CCTGCCTACTGAATGGTGATTGTAAAAAAAAATTGTTTTGTGCATAGTACATTGTCAATTGTTGATTTTT GTTTCTTAACTTGACTGAATTGGTGAATGGGAAAGTGATTAGCAGTATTATTAAGTCACCCCAACCAGTA GATAGGCACTTCAGATTGGAGTGCATCTTATATAAGCTGTACACATTGTAAAGCGAGGAACATACTCTTT TTTTTTTCTTTCTCTTTGTACAACATGTAAGAAAAGTAATAAAAGAGTGTGTTAAGAAAATCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds