Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030996713.1 PREDICTED: Strongylocentrotus purpuratus polypyrimidine tract-binding protein 1 (LOC574897), transcript variant X2, mRNA TCTTCCCTTGTCTCTGCAGGTAAAGAGGGAAAACAGTGCGTCATCGCCTTCACGCGTGGTCCACATACGT AATCTCGCCAACGAGGCTTTAGACGCTGACGTCCTAAGCCTTGCCTTACCTATCGGTCGTGTCACCAAGT ATCTCATGCTCAAAGGCAAAAACCAGGCATTCCTCGAAATGGCAGATGAAGCGACAGCACAGACGTTTAT CAACCATTACACGCACATGCCCAGGAACGTCCATGGACGACAGATCTACTGTCAGTTCTCGAAGCACAAG GAACTCAAAACCGACTTTGCCCACACGCAACAGGCCCTGGCTGTGCAAGCTGCCCTGGCTGCTGTGCATG CAGTCCTCAACACCTCCTCCGCCTCCTCCTCCTCCCCCTCCTCCTCCTCCGGCCCCTCTTACTCCATGTC TGGTAGCGGGGACCACCCCATGACCTCTTCATCTTCTGGCGGCGGCGGCGGCTTCGGAGATCATCTCCGC GACTCTCCTCCTCCGACGTCCTCCTCTGGATCTTCTAACCTGGATGCAAATACCATCTCTCAAATCGCCT CGCAGGTGGCCCTCCAGGCGGCGCAGCAGCACCCCATGCTTCAGCCGCATCCCATGCTACAGCAGCACCC GCAGCACGCCACACACCCCAAGGTACCGGACACCGGCGGTGGAGTCAACACCATCCTCCGAGTCATCGTG GAGAATGTGACCTACCAGATCACCGTCGACACCCTCCATGAGATCTTCAGGAAGTATGGCACCGTGCTCA GGATCGTCACATTCATCAAGAGCGGTCAGTTCCAGGCCCTTGTACAGTTCTCTGATGCATCACAAGCTGC TGTAGCTAAATTGGAGTTAGATGGAAAGAACATCTACAACAACTGCTGCCAGCTTCGCATCGACTTCTCC AAACTGACCAACCTCAGCGTCAAGTACAACAACGAGAAGAGCCGCGACTACACATGTGACCTACCGCAAG GTGACGGACTCACAGGGGTCGATCCTAGCACTGCTGCCATGTTAGGTGTGCCTGGTTTCCCTGCCGGTCT ATCTGCCTTACCCCACCACGCTGCTGCAGCGGCCCAGGGCATGAGAATGCCAGGCATGTACATGCCGTCG GGCTCCTCGGTCATCCTCGTTAGCAATCTCACCCCAGAGCTGGTCACACCTCAGGCTCTCTTTACCCTCT TTGGCGTCTACGGTGATGTGCAACGAGTCAAGATTCTCTACGAGAAGCGGGATAACGCCCTGATACAGAT GAGCGATCCCAACCAGTCACAACTAGCCATGAAGCATCTGTCCGGTGTGAAGCTGTATGGAAAGCAGATC CGTGTTACGGCATCCAAGCATCAAATGGTTCAGCTCCCCAAGGAAGGACAACCGGACGCTGGTCTAACCA AGGACTTCAGTACGTCGCCCCTTCACCGATTCAAGAAGCCAGGCTCCAAGAATTTCCTTAACATCTACCC ACCTAGTTCTACACTGCATCTCTCAAACATTCCGCCCACTGTCGATGAGGAGACATTAAAAGAGGCATTC TCTCAACATGGTACTGTAGCTAACTTCAAGTTTTTCCCAAAAGACAGGAAGATGGCACTCCTGCAGATGG GCTCTGTAGAAGAAGCAATCCATGCTCTAATTGCAATGCACAACTACCAGCTGGCTGAGTCGAATCATCT CCGCGTGTCGTTCTCGAAAGCACAGATCTAGACGCGAGGCAGTCCCGCGAAAGTCAATGCATACATGGAC CAGTACAACCAAGCAATGTCACAACGAGATCGACATGTCTAAGCAGAAGTAGGAAGGGGAGACCGCAAAA ACGAACTGAGAAAGATTAAAAAGTGTATCTGAATCACCCTTTGTGCCATTTGAATATGGGATCATGCAAT GCAAAAACCATTTGATGATAACAATAATGATACAGAGAAAATAAGTAGGAAATACACTGAGCGGAGACCG GAAGGGCTCTCTAATAAAAACTCTGATTTACCATGTGTGAGACTTGGCAATATTGGACGGATTTGATTTA ATGGTGTTTTAAAGATAGAAATAAGGAAAGAAATGTGGATTATTGACGAGAAAATACCAGGATGCTTTTG TAAGCATTGTTTACAATATCCTGTTTTCTGGACAGGGTTTTATATGGTAGCTTACACGGGATAAATCTTT CCCCTTCCCTTTCATTTTTTTTTCTTTTTCTTTGTTCCTCCCACTCCCTCCCCCTCCCTCAGTCACTTTT GGACTCTCTCTGATATGCTTACTCATTTAGACTTCTGCAAGTTTTCTATGAAATACTTGTGTGTGCGAGT AATTTATACCAAAGCATAAGTGAAAGTGCTTATGGTGAATCTGGACAATTGTCTATTTCTTTTATCCCCA TTTATCCCGAGAAAGCTTAAGAAATTGATGTGTATGATGTAAATAGATCTAAGAAAAAAATTGATAACAG AGATGAGAGAGAGAGATATATTGCATTTGTAATTATTATACAACTGCAATGTGTTATTTTGAATGAATTT TTGAAAACATTTTGATTGCATGTCTTTTTTTTTCTGTGAAAATTTTTTGGTGTCAGACAAATTTTACTCT TAGCTGTATTGTGGTGTGGTGTAAATTTCATTGATTTTTCTTGCATATTTTCCTCTCTCTCTCACTCTGT TTTTGTCAGTAGTTTAGAATTATTTCTGCAAGGAAAAAAAAATGTCACAAATTGTTTTTGAGATATCCTC TTTGGGGAATAATTGATGTCGTCAATAAATCATGTATCATTTTGTTGAAGATTATTCAACCTCGTATAAT CACCTTGGTTAAGCTCAGAAACTTTTATTGTGTTGGTTTTACATTTCTTTTCTGACATGCTCCAAGAGCA AAGTTTTTCTTCTCTGCGCGACGCAAAAAGGACGTCTAGATCCGACGCTCAGGGTCGTTATAACGTAACA AGTTTGTTGTCTTTACGTATAATCTTTGTAGATATTTGCCTTTGTTAATTTTGGTCTTTGCTGTGAGATA ATTTGCTAGAATAATTCTGAAACTAATTTCTTTGAAAAGAGTCACAATTTCACGTTGCTTGGCGGCTTCT ATCTTCCGAGAGCATATAGAGTTTTGCCTTTTTCTTTTGTGAGTCACTGACAAAGAATGAACATTCCACA TGTGTTGCACTTTACTCTGTTATTTTTAATTAATTACTGTGGCCAGATTGTTGAGGTGAGGCCTGCTTAT ATAATAGTACAGCTGGAACTTGAAGCAATACATCTCGCGGTCGAGATATGATCTTTACACATTCTTAATT CTCTGTATCTAGCATTCTTACATTTACAAATGTTAACAATCTCTGTACTCATGATGCTCTAATGCTGTGT TCATATTAAAGCAGTACATCTTTGTTCTCGCATGATATTGACAGAGCTCTGTCTCACAAATTGTTTGTTC CAGCGAACATGTCTGAACGTAAAAGAGACAATCACTCGCAGTAAAAGGAGGTTTAACAGAACGTAATTTA TAACGTTTACTTTCTTGGTCTGTGTTTTAAGGATATGTGCAAACTTTGAAAAATGAGGCTTTGTTCTAGT CACTGCTGTTTAAAGTGGTATTTTGATAATTTCATGATGATCAGGCAGTTTGATATGTGAATTGATATGT ATTTGTAGCAACAAATGATATTCTGTACATCGTATCTAATTTTCATTCTTATCCAACGTACGCTAAGCTA TGTATCGTCTTTTTAAGCAAATAATGACTACTTGTGTATATTCAGAGACAAAAAATTCTTGTACATGTCA CCTTTTTTTTAGGTTAGCCCATTTTCCATTTGGATCTGCTGTGGTGTATTGTGTAAAGAGATAAGCTAAA AGAAGCTTTGCTTAATTATTTTGTTTCAATTCTGTATTTCTCTCCAAAATTGAGAAAAATGTGTCACTCT CTTTATTATTTTTTAAATCTGTGCACTCTGCGTGAAACAATTTCTTTCTCAAGCCTTTAGTCAAGGCTGA GTGGGGGAAACTCTGCTCCTCTTTATTTCTTAAAACCTCTATGGAGTTTGGAAGCTGGGCGGCCGATTTT TAATGTGCCTTATAATCAGGGTGACATACCAGTACCATAAAAGGTGTTTCTTTAAAAGCCAGAGATGCAT TGAAAAAGTAAGAAGACAGATTAAAAGGGAGGTTTGCTTTCAGGCAGTGTGTTGAACTTTGGAGAGCATT TTACCTTGTCTCTTTTCCAATCATACTCATCTTGCTCTTGGTGGAGCAGAGCGTATTAAAGCAGAAAGTT TTATGTCCCGGATATATTTTTGTTTGTCATCTACCTAGAAATGTATGCTGCTCTCATCATTGCGTATCAT GTAAGAAGGATGTACTTTACTCTTGTAAATGATTGAAGTACATTTCTTTCAGAATGTGGTAGAGAGCATG CCAAGAATCCAGAGGGAAATGCTGAAAAACCCTTTTTTTCTTCTGATTTATCAATCTTGTATATGTAGTG TATAGGCAAGTTTCACTCTATTATTCCATGTATTTTAATCTCTGTGGTATTCATAAATGTGGCTTTGTAA AAATTTGACACAAGATAATAATATTGTAGCTTTCAAGTTATCTTAGATATTTAGAACATACTTGGCTAGG TAAGAAGTTTACTACAGCTAAGAAGTGGTTTCTAGGGTATGTAATGCTGTTTTTCTCTTTTAATCTTCTC TGTTTTCTTGTAAAGGCTATGAGAGTTGTTTCTTCCTCTTATTTCATTCAAATTTCCTTAACTTTGCCCG TTTTTTCTCCTTGTTCATGGCAGTGCCTGTCGACTGCACACAGCAAAGTGAGCAGCATCGTTGGCGTGTT TTCTGTGCACATTTCTCAGGCTTTGCTTTACCATGAATAAGGATAACACTTTAACTCATCAATTCTACGT CTAGCTGCATGAGGTATTTTTTTTAATATCCTTTTGTTCTGTAACAACCGTTTTTCCCCATTCTGCAGAG TGTTCCAACAAACTATTAACATGCACTCTAGTTTTTCTCCTTCCTTACGTTTCCTACATGTATATAAATC TTTCCCTTATTCACATTTTTGTTTGGTAGCGATTTCACCTGTTTTTCTTCATAAACATTTGATTTGAAAT CCCTAACTGTTTCACATTGATACTTTGTTGTTCAAGTCACTCATCTATATCTCTATGCTCTTTCTCTCTC TACACAGCCGATTGAGCGCACACAGCGTTTCAAGGCCTATTGCTACGCTATTCTCGCTTCACAATGCTGC AGTTATATAGGCTTTCTTCACTTCATTATGTTGCTATTACACTCTCAGTTTAACAACAATCGATCACCTC AAAGTCTTAACTCTACACGCTTTTTGCACTGGAACTTGTTACAATGAGCTCTTGGTGCAAGGGGCATGAT TTTGCCCTGAGGCTGTCAAAGGGTTAAGATTTTGGGATGGTCTTTCCAGAATGTTTTATTCTTGAAGATT GTTTGTACAAAGAAAGTGTTGACAGGACTTCCAATGCTAGAATAATGTAAGAAACATCATTTAGGGGCAC AAGGGACTGGAAAAAGCAAATCTTTTATCGTGAAAAACTGGACTAAAAATCATGTGTTCACAGTAGAACA AGAAGGTTTTGGACCATTTTGGAATTTTAGACACTTGTGACTGATAAGTCAAAAATGCAATTCTGTCTGG ATATAATACTTTATCCTGTCAATGGTACAAGTACCCAAGGGGTTACACTCTTTCTCAATTTACCCTATCT CTTGCATCAAATAGCCTTTCCATCTGAGCTTATATGCCTCTATATTTGACTAATATTTGGTTCTAGCATT GTTCTGCCAGCACTTTCCTGACTATGTTAAGATATGTTTTGTTGCTTATCATCCACCTTCCACGGCCATA GTCACTCTCATAGCCACACCTGTATCCCGCCATTTTTTATTGAGTTATTTTTCTTCTCTCTCCTCCAAGA ATTTATCCTTTGTTGATTTTTTTTTCTCTCTTTTCTCCTATTTCTGCTAATAAACTCTCAAGACTGTGCG AAAAATCTTCTCTCGTGTTCTCTTTCTTCTCTTCGACTCTTACTACCACTACTTTTACTACTACAATCAC GTATTCTCTGACGACACAAAAAACAAAAAATTCAAAACTATGTATTCCTCTTCCGGTCTGTATTCTATAC TCTTCTCCTTGCAACATATGTTTGTGTATTATCTCAAGCGTGAGGCTGTGAATTTTTAACGTGTTATCCT TCTATAGTCAGGATTTTTATTTTATTTTCCTTCGAAATTAACATTTTGTTGCTACTTGCTAGATGATTTT TTCATGAAATAACCAAGTGCATCTTCTTTTTTTAAATTAGTAGTTGTGATAGGTTTAGCATGTCTCATTA TTCTGTTAGAGACGTTAATTTTGTGTGGTGTACCTAGATCTAAAAAGAAAAGAATTTGTTTGTACGTGAT TAATTTATTGATATTATATATATACTCCAATCCCAGCCCGACATCGTCTTTCATAATACGCTGGCCTCCG ACCTTTGACCTTGCACCGGAGGTCGGTCACGAGCACACATGATGGGTCATTTACAACTTGAAGACATTCC TTTGATAATAAATCTGTGAATTCCTCTTCTTTTTTTAAAACCAAAGTTGTTTTTTATCACAGGAAATATA GAAAAGACTTTTTTATATACAAAATTTGCACCCCTTTATATGGATGATTTGAGCTGTTAGCTAGCAATGC TACACATTTTTTAACAATGGATTTGGACATTTTATTTTTTCATGAAGCAATCATTGTACAGACATTATTA TGGAAACATTTTTTCTCCTTTTTTTTAGGGTATTTAATACCAGGCCTTAATACACCTTCATTTCCCCCCA CAAACTTAGTGAACAGTGTAATATTCTGAAACTGAAAAATAAGATGAAATACCTTGAGATAATACCTTGG GATTAAGTTGAGCTTAATCTCGTGGGATCAAACATATCTTGAATGATGGCCCTCGACTGATCGATCCATC GATTACGACGGAGAGGCCCGATGATGACTCGACTATGACCTCGTAGTTGCCTGAAATATCCAGGGATTTT TCAAGTGTGTTGTAAAAAAAAAATATGAAAGAAGTGAGAAAAGCTTAAAAAAAGATTGAAGAGATTGGAT ATATTAACGTGTGATTTTCATGGTAAATTAAAAATACTTGTTTTATACAAGAGGCTGATGGAATAGAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds