Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038216792.1 PREDICTED: Patiria miniata alkaline ceramidase 2-like (LOC119741113), transcript variant X1, mRNA GGGAAAGTTTGTTGACCGACCTCTTTGAACATGCATAATGTCACGTCAGCTGCGCGCGGGCCGGGGCACC TGCATTAATAAACTGTGTGTGCAAAACATGTGAGAATAAAGCACTCGTATCCATTTCTGTCCACATCCTT GGCTTAAATTCATGGCACAACGACGTGGGATTTGAGGAGCTGTCACCATGTTTAAAGAACTTAGCCCAGG GAGTTCTGCAATTGATTGGTGCGAGGATAATTACTCGGTCTTTCCATTCATTGCTGAATTCTACAACACA ATCAGCAATGCTCTCTTCTTTGTGTTCCCGCCCCTGATGTGGGTCCTCTTCAAGGAGTACGCGCGGCGTG TCAACCCTTCCATTAATCTCATCTGGCTGCTATTGATGGTAGTCGGAGCGTCGTCTGTCTACTACCATAG CACACTAAGTCTCTTTGGCCAGCTGTTGGATGAAGTGGCCATTCTCTGGGTGGTGTTGTGTGGGGCGGGC CTGTGGTTTCCGCGGCGATATTATCCTAGGATTCTAAACGGAAACAGAAAGCTTTTCCGCATCATTGTAA CCATAGTGACGCTCGGTGGAACGATGATTGCTTTCATCAATCCATGGCTCAACTCATTCCTAATGATGCT GTTTGTCATTCCTGGCATCATCACTATGTACCTGGAACTCAAGAGGGTGCACTGCCCGCGGGTCGTCAGA CTCTGTCGGACCAACATGGTTCTCTGGGTCATCGCCGTCACCTGCTGGGTCATGGACCGCACCTTCTGTG ACTTCTGGCTCTTCGTCTCCTTCCCCTACCTCCACTGCTTCTGGCACATCTTGGTCCTGGTGGCGTCTTA CAGCTCCGTGGTCCTCTTTGCCTACTTCGACGCCATGAATGAGTTCCCGGAGATGGGGCCCGTGCTGCGT TACTGGCCCAAGGACCGCTACACCAACTTCGGCATTCCGTACGTGACGCTAAAGTGCGTTGTCGCCAAGC CAAAGGATTGAACCTGTGCTGCTGCAGTTTGACTCAAAAATCAGGTGGTATGGTGGTAGTGTTTCACTTT CAGGGGTCATATACTTTCAGTAAATGAAGACTTGCCATTCCTTTTTCAAGTTGTTAATTCTGTAGCGCTT ATCTGTGTAATACTATCTGAAGAACTCTCACCAAATTACTGTCAACGTGTTGTTGGAAATATTCAACAAA TCGGGTATTGATGATGAACATGATGAAAGGAAAAATTGACCTGGATAGCGGTGTATTCAAAACCTGATGG TGGATGTTTCCACGGAATGATGAAAAAGCCTTTAACTCCATGCTGTCATTCTTTCGTTTAGGTTTAAACA ACTTTTTTGGCAATGTTATTTTTTTTGTAGATTGGGAAACCTGGCTTTATTTCTGTATGTGTGAAAAAAT CCTGCATTGTACACTGCAACTTTCAAGCATTCAATCATATTCCCAATTCTTGCCCCAAACTAGAGAAGCT CATAAGCACAATTGTTGGAGTTAGGATTTTTTTTTCAAGTGTTAGGATATTTTTATTCAGGTCCTCTAAC TGCCAAGTGTCACATCTGGGCTTTGAGTCACAACAGCAGAATCAAAGTCACACTTCCTTGATAAGTGTTT GGTTCATCTTATTTTATATATTAATTTTAAAAAAAATCTATTGTATTAAAGTACTAGTACCTTTTCGTTA ATTTGTTTACAATGTGGGTTCTTATGATTCACAAATATTGTTGTCCACTGCCACCATAACTTAGCTTTAG CTTAGCAAGTGAAAAGTTTTATAGTTATATTTATCAAACAAACAAGCCCTTGTTCTAATTTAGCATTGTT CAAAGTGCACAGATTTGCCCTTGTACATGAACTATTAAATGCAGAATTCAATTAAGTGTAAAATATTTGG TTCAGTTCCTATAAGCATGATTGAAACAAAACCTAACAAACTCCAACTTTGGTTACTAATTGCAGTTTCA CCCTCATGTTTTACGGAATTCGCCCAGCTTTGAAATATTAAACGCAGTGTCAGCATTATGAACTCTACTT TATTTCGGATTCAAATTTGATGTGTGTTCTGCCAAATGGCGTTAATTGTCTTTATGAATTCAAGATGGTA GTACTATTTGTGACAGTAAAATTCAGTGATCAATGCAAATGTACATAGAAAAAGAAAATGTGAGCACAAA TTTAAGAGTAATATATATATTTATTAGGTAGAAAATTATAAGTGCATGTAATCTACAATGATTCTCACAA TAGTGGCATGTAGTCTATTATCTCGTTAGTTAATCTGTTTAGTATAAGTCTTGATTTTGCGGAGTTTCCA AATTTTAAGAAAATCTCTTCCAGTTTTTTTTTTAACCCTACAGGTAAGTGTACTATTAAATGTTTGAAAG GTTTGCCCAGTAAAACCTGATTTGTTTTAAAGTCATTATTTATGTCAGAAGGTTTGCTACAGTTAATCGT AAAAATTTAGTCTTGTTTTTATTGTTTTTAATTAAGTGCTTTAGTTTCCGTTGTTTACTGAGGGCATTTG ATAATTATTTGTATTGTTAATTGAGAGTTGTTGTTGAACAATTTCATGTAAATGTGTGAAGCACAAATAA ACACATCGCAGAGGTACATTCATTTATAATGTATATGTATCGGTACAGGTATGCATACATTAACTTGTAC ACAATTTTTTAAAAGCCATGACGAAATAATATTTTTTGGGGGGTTTATATTCCAAGCAAGAGAGTATTCA AAATCTCATGAAAGACAGGTTTTTTTTTTAAAGCAATATCATACTTTAGTTTCCAAGAAAACAGGAAATC TCATGCATAATTATGTTGATCATCGATAAGTCTTCAACCTAGCATCAGATGCAGCACAATATTCAGTTGT CATGACAACAATGCAGAACAAATTTTGCCATTAATCACAGATGCAGAGTTTTGTCGGAAATCTTATACTG TGTTGCATCAGAACAGGTTGTTCTGGTATTAACATAATTGGAAAGCCAATTTTATCTAATGTGGGTCTGT TAACAATTATGTAAATGTACATGTACCCATGTGCATGGGCACTTAATCTTGAACAACCTTATCCAGCTGT GAAGTGCTTGTAAGGGAAACCTGCTTGTTCCATCAACATGATCAAGGACAAATGCAACTCATTGTATCTA AATGTTTGTGTAATTTCTCCATGCTCGGGATATTTCATCCTTGAGCTGCATAATGAATACGAATGACCTA CAATTTTACTTCATAGTGTGCGGCTGCACATGTATCTTAGAAACATAATGTAATAATCTGTAACTATTAC CTGTATGTACCATGATGAAATGCCTTGTTTTACAGGCCTGTACATTGTAGGATCATTTGCATTTATCCCA AAATTAACATACCAAATTATTATCAATAACTTTACTTGAATTAAAGATCGTTCTGGTACTAAACTCATCG TGAAATTATTCAGTCTGTCTTGAAGTCATTTTGGAGAAATCAAGAAATATGTAGGTGATTTCCAAAGATC AGTCAATTGACTGATTTTTTTTGTTGGAATAAAGAGTGCTACTGAAGAAACTCATGTGATCAAATGGTTA TGCATGGTTTTCACTGCTTTCTTGAAAAGTGTAATATCCACCGAGTTGAAACTTCCACAGGTTAGGTTTT GAACATTCTTCTTTGGATTTTGAGTGGTGCTATTATTGGAAACGAACAAAATGCATGAAAAGCAAATGAT CCTGATATAGTCATTATATGTGCATGTCTTTTTGCCAAGGTTGTGGATCACTGCCGACTAACATGTGCAA TTTACAGTAGTTAAAACTTTCACATGTTACATTAAGTAATTTGTTCTATGTATTCTGGGTGTCGCCTTTT GTGTTTAAATATAAATCAAAATCTGCAGTGATCAATGCAAATGTAAAAAGCCTGAGTAAACTTTAGTCAA ATTCACAAATGTAGATTATGGAATTTTCAAAATCATTTCCTTTTCAGGGTGTTTCTGAAAATTTTAATGT CTCATTAATTTGAATTTGAATTTCATTTAACAGTTGGTTCAGATAATTGTGTATTATTACAAAGTTTTAA TATATACCTTGATAAAATACACAAATTCAAATTAGTTTGAATTCATCTTCCATTTTTTTTTGGCAGCTGC AAATTCCACTCGTACACAAATCAAATCGATATTAAATTTGCTATTCAAAAGTATGTAAAGATTCATTTTC CAACGAAAATGTCTTTCATTTTTACTAAAGCTGATGTATTAGGACAATGTCATTATTTTTGTCACACATT GAGGATGTTTATTATTGCACAGTAAAATAATAATGTTGTGATCCCTTAAGGCTTACATTTATTTATGCGG GTCAGCTTTAACGCACAAGCAGTACCTGGCTTATGATATCCCCAGTTACGTGTATAGCTACATGTGTAGC TAAGGGCACTGTTGTCTAGTTGTTTGTTAGTTTTATGTAAAGAGCAATCGCGTTTAGAAAATTAATCCGC GGGGCAGGTACCCTCAACAACTCACAAGCATGAGTACAAAGAGCAGTGGTTTTTATGTTTTACATTGAGG GGCAATGATTCCTTTGAAAAAAAAAGAGCTTTGTATATTATGCTCATTTCACGCTCGAGCTAGACTTGGC ACAAGTCTGGTGTACATGCACAGGTACAGTCTTCCATACTGTATTTACCCCTATATAAGTCTGACTTGAG TCAAGTCTAGCTCCTAATTCAAAGCTGAATTGAAAATAAAGTGATAACGTAGCATGGACCAATTTTTTTG TTCAATGTCTCATTGGAAAGTTCATACCTTTTGTAATGCTAACAACTCATGAACAAGCCAATTATAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds