Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT097064.1 TSA: Strongylocentrotus purpuratus WHL22.436737.0 mRNA sequence CGGGTTACTATCACTTAAGTCCCACTAAGTTCTTAATCTCGTTGTTTTTCTCCTTTTTGGCATCGCGATC TCTCGCGACTTGACACCTTCCTACGCGCTCTGTCAGCAATAATTCTTCCTCACCTCAGGGTTATCAATAT CTCGTAATCTATCCATCCCTCAGAAGACTACCATAGCTCATGGATGGGGAGACCCAGGTGAGATAGACAG AGAATGATTGCGATGGACAGGCTGATAAGAGTCTTCGGTTGCCAATTTCTATTCGCTGAGCTCTGATTAA AATAGGACTACGGAAGATCGAGTGAGAGTTAGAGAGAGTGAAGAAAAAAAAGTGGTACAAAGTCGTCTGC TCATACAGGTACAGTCCCGGAGGTGGGATTTCGCGTTGGTTTCTTTTTTTACCTAACGCGTGGGGAGAAT CGTCTACTATTTTATATATCGCTTCTTCTTGTTCTTTATTAGCTCGTTGGGACCCTGAGGCGGAGTTAAT TCACACCTCGATTTTCATTGTTTGCTATGCTCTATACCTGTCCCGATCGCCCATATTCTTGCCAAACATC GAAGAGTTGCATTACCATCGCGACACACAAATTGACAACTTCTCGGCGGAGCGGCGCTGGATGGGCGAAG AGCGGGGATTGGAGATTTCATGATTGAAAGTGAGATAATAACATATTTCTCCTTCTTTCTTCATCTTTGA TCGAGCGATACGCGAGGGAGTCGAATTTTCCACGAGAAAAGGGAACTGCATGTGGTTTAGAAAACAGTTG TATTGATCGCAGCTCTTTCTCAAGGGGACCTGTCCAACGGAAGCTTTTATTTCTTGCGCTTCGGTTTCAC TTGAGAAACAAGTACTTACAATGGGCAAATGATATTCTCCATTCTGCCTAGTTGTTATCTAATTTATGAC TTGGAATGTAATAAGTGCTTGATAAACATCACGTCTTTTTCCGACATTGCAAAGAGAGGATGAAACAGAG GAACTTAACACAGAGATCATCTACCTTGTCTTGGGACCTTATCATCAGCACGTAAACTGGTAAAGACGCG GACGCAAAAGTGTCGTGGACGCTATCACTCACCCTCATTAAGAACAACGAGACAATTACTGATGATGTAT AGCTGACGATCTTCTCCGAGACATTAAAGCGAGATAAAACACAGAGAATTAAGGGATATATCCACTTGTT ACCCATCCAGTCGAACAGAGGTTGTCATCTAACTATCGTCCTAGTTTGATTCCAGTCGTAAAACGATTTG TGCACGAGATCACACCAAAACACAAGTGCGTCACGTTCATTTAAAGGCTGTCTGTGACATATTTTCCTGA GAATATCGTGCCCTTACATCTTATCCAGTTATGACTGCACAATGACTGTAAACTCCGCGAACACCGATCA GAATGTACCGCCTTCGTGGGATTCGTCGTCAGACTTCTTCCTGGACTATGCCACCAACGCGACCAATGGC ACACTCGTCTACAACATCCCACGACTCATTATCTCTAGCGCGCTACTGCTTATCATCATTATGGCGGTCA TATTTGGCAATATCCTGGTGCTTCTTGCAGTACTCATGGAAAGAAAACTGCGCACCGTGACAAACTATTT TATTTTCAATTTAGCAGTAGCTGATCTTCTCTTGGGAACCCTCGTTCTTCCATTTTCTGGTACCCTAGAG GTAATTAGCTACTGGCCATTCGGTCAAAAGTTTTGTGACGTATGGGCGTCGGTAGATGTTCTTTGCTGTA CCGCCTCGATTGTCAGTCTTTGCGTTATTAGCATCGACAGATACATTGGTGTTACAAGGCCGCTGAAACA TAAACTCATAGTCACACCGAGGAGGGCGCTGTTGGTCATTGTCGGTGTGTGGATACTGTCTTTTGCCATT GCAGTTGGTCCGTTGTTTGGGTGGAGACCACCCAAGGATGACCCTTTAGAGTGCCCGCTTTCAGACTCAA TAGATTATGTCTTCTTCTCGGTCTCTGGGTCTTTCTACATTCCATTAATTGTCATCATAGTCCTATACAT TCGCATATACCAAACTGTTTCTGTAGAATACAAAAGTAGACATGGTGGGAAGTCTCACGGCTCGCCATCT ACAAGTTCAGAGAAAGGTAGCCCCAATGGGGTTGTTCTGCGGATGCATAGAGGCAGTGTCCAGACGCCTC CTGGACATCAACTGGTAAAACGCCAGAATTCGGCCAACAGCCTCCTAAGGCCTTCCAGAACTGCGTCGCA AAGATCGGTTACCTTTAATCGTGAAAAGAAGGTAGCTAAAACGCTTGGGATCGTTGTCAGCGTCTTCTTC ATGTGCTGGTTTCCATTCTTCTTCCTGCTTCCTTTAACCTCTGCTTGTACTAGTTGCTACGTCCCACCCT TGGCCTTCAACATATTCTTCTGGCTGGGTTACTGCAACAGCTTCATGAATCCCCTGATCTACGCGGTGTC CAACATGACATTTCGCCGGGCTTTCAAGAAGATCCTCTCCTGCCAGTACTGCCAAGACTGTCCATGTGGC CCGACCAGCGCACCGCGTAAGATTTACAGCGCAGGCTCACGTAGTCGGACAAGAACCAGTAACTGCTTGC AGTACAACGCCGTACCCACGTGTAATGATTTTGATTTGAAAGGGCAAGACGAGGTTCTTCAGGTCGTTGT TGCGAGAAGAGCGTCCTCTGCATCAGAGGGCCACTTAGGGAAGGACGAAATACAGGATTTACTGCCACGC TCATCGTTGCGGAGGACACTCTCTGATGCAGGACGGCCGGTGGACTGCAAAGTGTTGTATGCGCGGTTGT CGGCCGGTGCAGATGCTTCGCTAAGTACCATTACAGAAGTCCAAGAGCACCCTGAACATGAGGAGTCTTC TTTTCACGAACGTGGACACAGAATCTATCACTTTTCTAGCAGTAGCGAAGATGTGTCATTGTGCTCTTCA CCTAGCCATTCTTCAAAAAACCCAGAGAGTTCCTCGGCCAGCGAAGGTATACAGTACCCAGGGCCTCGAG GACCAAACCTGTTGGTAACTAATGCTGTAATAAATCAAACCGACTCAGATAGCGCAGGAACCCCGAATCA TTGCAGCTCTACTGTTAATGGTATTGAAACTCCAGAATCCTTGGACTTGAACGCGAAAAAGAATCATAAT CTAATCACATGCAGACAGAGGGCAACGAAGGAATTTAATAATCGACAAGAACCCAGTAGATTAATTTCAA TAGAGACTTCGTTATGAAATGCAAGACTTATAAATTATATGTAATTATCGCTGCTCATAATGAGTCTAAA AGACGGGATCCACATCTAGCTCACACCTTGAAAAGGTGCAAATTCGTTGCAAATTTGTTCGTGCATATGA AACTAACAAAGTGTTAAAGCCCCTTAAAAGTGTTGGGAGCCTCAAATTCGCCTACAATTTTATGGAAAAT TTTCATTCAAATTGTATCATTATGTGAAAGAGGATATCATTTTAGACCAGTTCTGCAAAGATTTCCCCAA CAAAAATGTGTTTGAAGACAAATATTGATAAAAGATTACATCATTTTGGTTTTCTGTTGTTGGCAGAAAA CCTAAATCTTGTATTCTTTCAATCAATATTCGACTTCAAACACATTTTTTTTTAAAATCCTTGTAGGAAT GTGTCTTAAATGACATCACCTTTCACATCATGATACAATTTAAGTGAAATTTTGCCATCGAATTGTGTGG CTCCCAACACTTTAGAGCGGCTTCAAAACATTTGATATTTCCATAATGCGAAATGATGATTTTTTTTTTA AAGAGTATTTTAGTTTTTAACATTTGCATTATGTCTTTATTCTAATTTTTGAATAAATAGTTTAGATGAT CGATTGAAAATCGTTAAGAAAATGAAAAGAGTTAATACTCGCTTGAATTTACACACCAGGGGGGTGTTTC ACAAAGATCCTAAGTTGAACTTATCTCTAAGTTTGACTTAAAATTATGGAGAGCCATTTGTAGCCTTAAA ATAAAATATATTCAAACGCGAAAATTCAAGTATTTCAGACTTTTCATAAATTCCACATCAATAACATTGA AATCTCCTTGATAATTGAAAATATGAATGTTTTGACTCAACATTTAATGTCTTTTAAATAACTTTTACAA AATATTTTCAATGATGCTAACGGCATTCCATAATGTTTAAGTCCAACTTAGAGATAAGTTCAACTTAGGA TCTTTGTGAAACACCCCCCCCCCTGGACAACTACTTTCTGGACTACATTTCCATGACTTATAAGACAAAG AAAAGTTACCCCTGGACGATTTCCCACTACTATTTTGCCCAGGAAGACTGCACCTCCATCGGCTGTCAGC CCGGAACAAGTACCCCCAAAGACTACCTCGAACAATCACCCCTTATGAAAATTACCACCAATAAACTACC TCTCCGATAATTACACCCGGACAACTGTCCCTCATCAAAGACAAAGGTGATTGAAGAGTAACGAAGTTAT TAAATGCTCGCATGAATGCAAAGCTTATCAGGCGACTAACCATCAGGAGTACAACCCACGGAGAACTGCC CCAAAGACAACTTTCACGGACAACCTGTCCTAGAACGACTGCCTGTGGATAATAGTCCATGACAGACACT CCGCTCTATCGTTCCTCGAAAACTACTGCTTAGAACCATCACCCCTGACAACTCGCCCAATTAAAAAAAA AAACATCGACGGAATAGCTCTCCATGTTGACGAAATAGCTCTCCATGATGACGAAATTGAATGCACTTAT TGAATATAATACTGAAGGGGAAAAGCTGGACAACTCCCACTGAGGTCGGTTACTCCTTGACAACTTCCTA TGACGGCCTCCCTCTGGACTAATTGTTAAGACAACCTCCCCCAAGAAAACCTATGACATTGTACAAAGCT GTATTAAGCCTGCCCCTCTTCCTCTCCGACTGTCGAGCTATGGAAGCACCCTCGACCATTATTTCTGTTA CAACTATCTCTAAAGTCAATTACCGACTCGAGACACTAATCTAACCCGGGAACCTGCCCCTCAGGACTTT TTACCCCGGATAACTATCGCTGAGGACATTTATCCTCGAATATCAAAACCTGTGTATTCTTACTCTCAGA CAACTACCCTGGACACCTTTCCACAGGACACCTTATGACAATGTATTCGGACAACTGCGCCTCCCCATGA CAATGTACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds