Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041612810.1 PREDICTED: Lytechinus variegatus probable ATP-dependent RNA helicase DDX28 (LOC121418732), mRNA ATATGCGAACGAGTACAACATGTCAGCGCCCTGAGACAAATTCGATCCTCTATCTCTTCCTGGAGGCTGG ACGCACATTTCTTCTTTTTCAGCACACTTGGACTGCATCAAATAAAGTTATTGAGACAATGTGACATACA GGATCTCATTACTTTTAAATATACTAGGCTACATTATCATCTGAGAATATTCTAAGCTAAATGAATGAAG TGAAGTGAACGTGAAGATCCCCGAGGAAGGCTACCCGTGCCGTGGTCCAAGACGCGACGTGCATGAATTG GCATCATGGAGATATGTGCTAGATGTACTCTGAGATTTCATAAACTAATGTGCTACACAAGATATTACCC AATCAGTTTCATGAGCACAAGGCCAAGTCCTGACATCCCAGTTATCAGGATCCCCAAGGCCTTACAGAAG AAAGTCCAGACCATTCAAAAGAGCCAAAAGAAAGGTCCAATCAAGTGGAAGGGTAGGATCTTCACTGCTA GGCCTGGTACAGAGATCATCTCATCCAAGAGAAAGGAGCACAACCACTATCTTAACCAGACCTACCAGAA GCTCTCTCCTCCCAAGCTTGCATCTCAGGGTTGGAAGTCCAGTAAATCCAGGGGGGATTACTTTAACATT CTAGCCTACAAAGGGAATCCATCGATCACCAAGACACAAGAAAATGAAGCAGAGACTGCGGATAAGAAAC CCAAAACTTTTCAAGACCTGAAACTGGATCCTTCTGTCATTAGAGGATTAGATTTTATGGATATCAGTAC ACCTACAAATATACAGTTGTCTGCAATACCTAGTATCCTGCAGGGAAAGAACACTCTGTGTGCTGCAGAG ACTGGTAGCGGGAAGACCTTGACTTACCTACTTCCGTTGATACAGAGGTTGCTTGATGAATCAAAATTGA CAGGCACATCTACAGCTGCGGAGACTGGTCTGCCTAGGAGTGTGGTGCTTTTGCCTGTCGGTGAACTTGT CCATCAGGTTCTGGAGGTTTGTAAGATTCTTGCCGAGTCTACTGGTTTATCAGTTCAATACTTTGACGGG GAGACAAGCTTGAAAAACCTGGAAAAAAGACTGAGTTCATCCACTGACATTGTCATTTCAACACCTGGAC CCATTATAAATGCTGTGAGACAAGGTTATGGCAACTTGAACTGTGTATCTCATGTGGTAATAGATGAATC GGACACTATGCTTGATGATAGCTTTATTCAACAAACCCTCAAGATTTTAAAACGGATTAATATTGGAGAA GGAAAGGCATGTAAAGTAACAGCCCCAGGTGAAGCCCAGCTGACAATGGTAGGAGCAACCATGCCAAGGA AAGCTACAAACATCCTTGCTGACATCATCCCACCTGAGAATCTTGAGGTGATTTCTAGCCCTCATCTTCA TCGTATAATGCCTCATGTTCATCAGAAGTTTCTTAGGCTACACTCACAGGATAAAGCAGTCAAGATCCTT GAGCTAGTAAAGAGAGAACAGAAGAGTCGTGTTTCCAGTACCATGGTATTCTGTAATACAGCATCGACCT GTGATTGGTTAGCTCACTTTCTTACTGAAAATGGCGTTCCAGCTCTTAGATTACATTCTAAAATGGGTGG CAAGTCTCGTAGTGGAATAATGAAGGCCTTCAAAGCAGGTGAAAGTAACATCCTGGTCTGTTCTGATATT GCATCCAGAGGAGTAGATACAGTAGAGGTGCAGCATGTGGTAAACTTTGATTTCCCTCCGTTCATGTCTG ACTACATCCATCGAGCAGGGAGGGTGGGGCGTGTCGGCAGCCAAGGGAGCGGTCATGTGACTAACTTTGT GGTACACAAGTGGGATGTGGAGCTGGTCAATAAGATTGAGAGAGCTGTAAGGATCAGGGAGGATCTTCCC AGAGTGGATGCAAACATAAAACAGAAGCATAACAAGAGGGTGATAGACCAGGACCTACAGGATGTAGAAC AAGCTCTGAAAGGCTGAGGATAGTCCAGTAACAAGCCCAGTAAAGATCTGTATGATCCACATTCACTGTG AGAAACCAAATCAGATGGTCAAGGCCAAGTTTTTTGGGGCATCCAATCTTGAGGTCTACACTACAGTCTC AAGAAAGATCTGTCTGGTTTTGTACTGGCTCCTGTATGAGATGGTCTCAAGATTTTGCAGGAAGGAGGCA AATTGTCAATTTGCATGTATACAGAAAATCAAGACTGAGAAAGAAAATGATGTACCATGTATATGATATA TTTTGGCAAGGACAAGTTGTCATTTGTTCAGACTGTATTTGGCAATACCATTTAAATATTATAATCATCG AGTGGTAATAGCCAATTATTTGTTGCATGCATGGTTAGTTCAAATCTCTGAACGAAACCAGTCCGAATTG CTCTCTCATATCCAGAATCTATTGAAACCTATGTGATATGGGACCCTGACTTCAATCACCCCCCCCCCCA TAAAAAAATTAAATCCTATTTTGCGACTGTGATTTGAAATAAAACCACTCTGTAATGATTTTTAATTCCC CTTCTCATTATGAAACTTCACATTATAATATCTGGCACAGCTTTGGTTTTGTGTCACCTCATATCCCATC AACTACATTATGTCACAAATTGCCATTGAGCTTTAATAGGCACTATACCAAACACCAGAGCCGTGTTTTT CACTCCAGAATTCTGCAACTGTCTTTTCATTGCTGTGACATTCACCAAAGACAAAACAATTGAGGAATGT GGGAGAGATGTGACTCCTGATCAAAGATATAGCAGTGTTTTGTTATGGTGCCTTGATTGCTAAGCCATGT CATACCATGTCTGAACTAGCCTTATTCCAATGATGATGGAATGTTCCTTTGTTTATGCATACATGTATCA TCCAACTTTTGTTAATTGGGAGCTTTATTTGTCTCATTCATGATGTGGAGTCTTTTGATTTGGAGAAATC AGGGTTATTTTTTACATGAATAAGGGGAAGATTCTGTGTCATGGGCTAGGTTATGAAATCTGTAGCTCCC TTAATAGGCTAATGGAGAGAATGGAAAATACATATTTTTACATGATGTATGCTGCATTGAATAAAATATA TCTATATTACAATGGAAGGCATAAGGTGTTTATATTTTTGTCTCAATGACCTGTTATAATTTCATCCATG TTCTTTGGCTCACAGGACAAAAGTAATGTCTAGCACCAATTTGATGGAAATTTGATTTATTTACAGGACA CCATACAAGTTTCATTCTCAGATTTACAATATGTTCCATCTTTAATATTTTGTAAAACTAAGAAGAATGG GAACATGAACTGATTGACCATCCATGCTTAAAAAAAACATGCCATACATATATGGTATAAAAATGAAGTG CTTAAATAAATCAAGTTCAAAGAATTATCATGTCCTTTATCCTTTAATTATAAGAAATGTGTGTACAGTA TAGATGATGTTTCCCTCATAGACTACTGAGTTATATGCAAGGTACCACAGAATAGGGTTCCCCGCTTTTT AAGAAAACAGGATTCCCTGATTTTTCCCTGATGAAGTTTGAAAATTCCCTGATAATTAATTAAACCCATT CCCAATTTTGCATGTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds