Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041604627.1 PREDICTED: Lytechinus variegatus amphiphysin-like (LOC121411778), mRNA CATGACTACGTGAATAGCGGTTTTTGTGGCACTCTCGCTGCGGCAGCTCCCGGGGAAACTAGACGCTCGT GAAGGGTATCCTAAAAACTCATTCATTTTCCTCGTACGCGCGGTGCCGGAGTTTTGTTCTTTCAACGTTA CGAATATGGGTAGCACGTACGGCGATCGCGTACGCGCACGTACAGCTGCGATTTGGTCACACAGACAGAG CAAAATGGCGGAGATAAAACAAACAAGAAAATCAAGTATCTTCCATAAGGGTATAAACAGAACGAAAGAA AAGGTCCTTCAGAAGCTGGGCAAAGCAGACGAGACGAGAGATGAACTGTTTGAGCACTATGTACAGAATT TCACTTCACAACAAGCTGCTGCTAACAGATTGTTCAAAGAACTCAAGAACTATGTGACGTGTGTTAAAGC GATGAGTCAAGCAAGCAAAGCCCTCTTTGAAGCTATGGAGTCGACGTATGAATCAGAGTGGCAGGGACAG GAACAACTGGCTAGTGTGAGAGAGACTCTAGACCTACTGTGGGACGACTACCAGAGGAAATTAATTGACC AGATTATGAACCCCCTCGTGTCCTATCAAGCAAAGTTTCCGGAAGTGAAGAAACGGATGGAGAAGAGAGG CAGGAAATTAATAGATTACGACAGTGCAAGGCACAATCTCGAGGCTTCCAAGAAGAAAGACGATCAAAAA TATATCAAGACGCAAGAGGCATACAACGAAGCAAGGAAGATGTACGAGGAGCTCAACTCAGACCTCCACG AAGAGCTACCCACGTTATATGACAGTCGCATTCCGTTCTACGCCAACACCTTCCAGCTCTTGTCAGCAGC AGAGTCAACATTCTATGATGAAGTAGGCAAGGCCAAGGGATCAGTGAGCAGCATTATGGGTGATCTCTAT CAGGAGGCATCAGTGGGAAAATATGACATCAGAAAAAGCATACCTGAGCTGCTACGTCAAAGCAACAACA CGTCCACACCTCCCTCCACCATCTCAACCCCTATCACCCAGTCGGCGGCCTCGAGGGATTCCCCCAACCA GAGCCCCGTCTACTCTGTCCCACCCGCCAGGCGGGACCTGCCGGAGGAAAGGGAAGAGGAGGACGAGGAG GAGGACGACGACGACCAGACGGCCGAGTACCAGGTTCCTCGGTCAACTCCAGTTGAGCCTAATAAAAACC CAGCAGCAGACACGACGACACACAACGGCACATCTCCTTCCTCTCCACCACCTCAAACTAACGGCAGTAA TCTACCATCAGGCGTACTATATAGAGCAAAAGCAACACATGATTACCAACCGAGAGACTCTGATGAATTG ACGCTGACTAAAGGAGACATTGTATGTGTTATACCATTTGAAGACCCAGAAGACCAGGATGAAGGCTGGT TAATGGGGTACAAAGAGACCACGGGAGATAGAGGCGTCTTTCCTGAGAACTTCACTTCAAAATGCTGATG GCTGTGATCATGGCACCCATTCTCTTTCTTAGTTCACATTGCATCATCGGAGGGATTTACACTGACCTGA ACAAAAGGGCACTGATGTTGTAAATTCTTCAACAACAAATATACAAAATTGATGGCAAATTTGCTCTTGG CCAATCTACTGTATGAGGTCTCAGTCATGCATAAAGCCTTGCATAACACTAAGAGCTTGATGAAACGGCC ACAGGCGGGTGTTTCATAAACCTGTTCGTAAGTTACGAGCAACTTTATGAATGTCTGGTGACCCTTTCTT CGGAACTAGATCAAAACCTATTAAATTTGGTGTGTATCATTGAGACAAGAAAGGGTCACCAGTCGTTTGT AAAGTCGCTTGTAAACAGCTTTTATGAAACACCCACCTAGTTAGCATTGTAAGTGATAACTGTTTAGCAG TTCATATGTTTGTTTCGAGCTGTACAGTGTAGTTTTGTCCAAAAGGTGAAAGGCACTCACCAGTGCAGTG AATAATCCTCATTAAGGTATACGCAGGACTTCATTACCAACACGACTGCCACCTCAGAATGTTGGTGGTG TTAACTATATACTGGGGTTCATGAAGGTGTTTTCAGAATTACAAGTGACTCTATGAATAAATGAAGTGCT CAAACGCGAGTCCATGGACTTTTTATAAAAGTCTATTTTTTTTTCATGATCTTTTTAAAAGTTTGACAAA CGATATACGCTGCATATATTGTTAATATTATAAATGTTGGTCATCATGAGCATATTTCAATTTTAGCTTA CAGGATTAAATGTGTTCGGATATCCACCTGGCACTAAATATTCTGCTCCTCTTGAAAGTCTTTTGTAACT TTGCAAACAGCTTCAAGAAGGATTTCCTTCAGGCCGTTTCATAAGTTATGAACTAGTTTGCATGACTGGT GACCCCATTCTTGTGCTAATGCAGGGGCCACAGAACGGTTTTCTGCGGCCCCTGAATGGATGTATCCTTT TATAGCCGACATTATGACCTAAGAACATGTTCCAGTTGTGTGTAAAGTCACGCGTAACTTTTAATACAAA GAATTTTATGAAAATATTGATTATCATGTTGGCCTTGTATCAAAGCATGCATAAAAAAGGAATTTTTTTG AGGGGGGAAAGATTTCTTCTTTGAGAGAATGTGGTGGAGTGATTAGATATTATTACACTAAATTTTTATT GCTGTTATTTAAAATAGTTCAAAGGCAATAGGCTCTTGTATATCAACTAGTGTGCTCAGTGAAGTTACAA TTTCATAAATAATCATTCCTTGGTTAGATTAATCGGGAGGATGTGGAAGCTACAACTGTAGCCTGAGAAT GGTGTGAAATTGATGGGTTCAAATAGGTTATATTTAATCATTTACTGAAATTTTATTCAAACTAACAAAA AAAAAACACCTTACATGATGCTCATCACAGCATTGAAGTTTGAAGAACCATATATTCATTTTCATATCCA TTTTCCCACTCCTACAACATAAAATAGTGTCAGTTTGGTACAAAGAATAATGATTTGAGTGATTATTGGT AATCTTAAAAAATGGTTAGTTTGATATGTGAGAAGTAAGGAATATCTAAGAAAATTGATATTCTCCCCGT CATTTATATTACATAGTAGTTGGTCCAATCATTCTAAAACTGTTCAAGCTGAATGTAAAAAAGAAGGCTA ATCAGTTTAATGAAATCATCCTCATTTAAACTGTCAAATATTTGCCATATTTCCTTGCCTCCTCCCATTA AAAAAAATATGAAGAAGTGAAGGAAATATTTTGTTTTTAGATTAGAATATCGCAAAATTTGACATATCTA TTAAGGAGTGAGACACAGGTTTCATGTGAAGTAGGTAGATCGTTTTGCACTTGCAATTATTTGATTGGGC ATTCATGTAAAAAAGAAAGAATATAAAGTAGGGATTTTCATCAAAAGCAAGATTGTTTTGACATGATGTC ATGTTATGATGTATGCACTAAATGTTTGTCATTTATAAAAAAAGAACACCAAGACTGTTCCATAAAGTAT GTAGAACGTTCCTCTATATGTGGGACCTTACTGAAGTGATTTGCCTCTGCTTTCTAGTTCATATAGCAAG CTGTTATGCTCCCAAATGGCTGGAGTGGATCATGAAGTGAACTAATTTTGAGAAACATGAGGAGCAGTTC AATAAAAAGACTGATATTTATTTGGATTTACCCATCAAATTACTACATCATACAGTTATTGTAAACATCT TTTGAAATATCACGGGGATGTTTTTAGTTATATTTCAAATTCTTCAGAATCCCAGCTTTCATTCGAAAAG GTCAACAGTTCAAATATACCACTGAAACTGTGGTGTTGGGAGTCTTGTTTCTTTTTCTCTCTCTCTCCCG AATATTTACCTATTGAAGTATGAGAATCATCCCCCCAAAGTGAGTTTGAAATATTTTGTCTAGACATATT GGACATAAGGTCTCTGGGGCTCTGGCGCTGTAACACAAAACATAACTATTAATCGTAGAACAGACTTTTA TGATTGATTGCATTGACAACAATGTACGGTCAGTCATGAAAATCACAATCAGTTAAGCTTTGTTGGACAG AACCTTGTAGCTTAGTGATCATGATTGAACTTTTATAGACTAAGAGTGAGTAACCGACAGTAATGTCATG CTGACAAAATTTGTGTTTGATTTTTATCTTGGCGTGTGTAGTTGCTTTTAGTCATAGAAATTATCATGGG TTTGTGAGGATAATGTGTGATGAAAAGATTTTGAATTTCAGTAACGTGAAGGGCACCGCATGCTGTAAAC TATGGTGAACGAGTCCAAGTTCTTTAATATTTATTTCGCTTGAATCAGGGCTCCCCGTCTTGGTGTGTGA ATAAAGCTACATGGAAATATTTGCGTAACTTAGGTGCTTATTTTGAATGATGGTTAGAAGGTTCACATTG ATACTATTTTTGTCTTGAAAATTTCAAGGATTATCTCCTGATAATCATTCTCATTTTTATTGTACTGTAC TCTCATGATGCTGGTCCGAAATTACACCAGTGGCATACATGTGCTAACATTAACACTTCATCTCACGGAT GGTTGCTCAATAAGGGGGCGTGTTTCCTGAGCACATTACCAAATGGGTTGATGTGCTACATACAGCATGC TACTTGTATTTTTTAAGTGTAACTTATAACTCACTCAACTCATAACTCTTCTGAAACTGCCCCTTAATTA TGATACCAGAAGTGAGACGGTTTTCTCTTTTTTATGAATTTATTGATAAGAGGTACTTTTGAATTCCTCT CTTCTGAACAATGGCATTTCTTATTTTCCAGGCAGTGCTAATTATTGATGGTTTGAATGAAATTGTACAT GTATATTTTAGCTCCTTGACTTCCTCATAGCCAGCATTTGTAATACTGTAGCATTATTTATGAAGCATGA ATTGATTGGATGATAGCATCACCCGTTTGGGGTCCACAATGGGTCAGTATTTATATTTCTTTTCAATGTA TTGTGAAGTTAATTGAGCTATGCAATGAAATCATCATTTTTTATTGCTTATTTTGTTGTTATTTTTTATT GATAATTTGTGGAATGTTTTGATATACCTGCTTTTTATATTAACCACTTTCTATCTCTTTGTCTCTATCT TTTTCCTTTTCTCCCTTATCTTGCAAATTCGAATTGCTTAAATTATTTTTGTTTTTATATTAGGTAACTA TGAATAGCACCCATTGATTTTTGGTTTGATTGTATATATCTTGCTCAAGTTTTGTTTCATTCTATCACTA TATCAATATCCTTTTTTTCTGTCTTGTGCTTTTAGTTCAAGACTGAATTATCAGAATTTCTCTTAGTATA CCTGTTGTTTGAAATGTCTATTTATTAGATGTTAGATAATCAAGAGTTAAATTAACTCCATGATAATGGC TGTACAATATGCCCTGTGCTCAAAAACTATATCCTCGTCTTATGACTTTTATATTAGATCATAATCACAA CGTCTATAAAAAAATGTATTTGAACATTGACATGTATGAGGCAAGTATGAAGAACACATAAAGATTCCGA TATCACTTTAATTTGTAATACTAAAACTATTGTAACCTTTTGCACCAAACTGCCATGAAAAAGATAATTT TAGAGATAGATAAACCTTTATTGGAGGAAAATGTTAAAAGCATTGAAAGTGGGATGAATTAAGACTTAAT CAGTGAATATTTGTTTCTTTCATTTCACATCTTACATTATGCATAGAGCTATTAATAATTAATAGCTCTA TGCATTATGTATGAATAGTATTTTTTATGTTGTAATTAATTATACCATAAATACATAACTCTTTGAAATC ATGATTGTAGTTTATTGTCATGCAATTGGAATTTAGGAAACATGCCAAGCTATCAATATTTCATGTAAAA TCCTTTTCTGATTGTGATTATAAATGTGAAATGATTGTCTGGTGGTTGTACCGTGGTCTATTGTAAATCA TTGAAAACATCAGACTAGTCTTGTCTGTGAGTGTTAAAGAAGAATGTATGTTTTGTATTTATTAATGTTT TGAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds