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Echinobase Accession
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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041599463.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121408128 (LOC121408128), transcript variant X2, mRNA TGAGTGCCCCTTATCACACTCTTAACCCAACAGTTACGCACTGATAAGCTAAGTGCATGGATACCAGTAA TATCACTGTGTGTGTGTTATTAGTGTTGTATGTGTATGAGGGATACACGTGGACCAAACACACACTAACG AGACACCCCGAAAGGAAGTATTCAATGGACTTAGCACTGGTACAGTTTGGGAGTTCCTCACCAACAAACT TTGTCAGACAGTGCAGACCGGTACCTGCAAGAAGTCGGGTTTGAGTTTTATGTTGCATATCTGACGTAGG ATTTATATACCGGTATATAGTTACTGGATCGTGTTGTGATTATATAAGGATTATATTGTGAACTTGTGAA TGGTAGGAATCCATCTTATAGTGTGTTGGAAGTAAATATTGAGTTTCTTTAAGACTTTCACTTTGGATTT GCCCCCTCCCAAGGGGTGAAGTACAGGGCATGCAAGATGTCTACTCAGGTAGAGTCCAGACTGCCTACGT TGCAGCCAAGGAGGTCTCTCCTGCCTGGACCCAAGACTCATTATCCACTCCGTAACACCGACATCAAGCC ACCTCATCTCATACCATCAACTCCTAACGTACCATTCCGCCATCTGGTAGTTGGACAGCGTGTGGAGACC ACAGACGGACGGGTAGGACTCCTGCACTTTAAGGGCAAGACGCACTTTGCGCAGGGATGTATGTGCGGCA TCGAGCTTGACGATCCCATTGGCAAACACAACGGTTCTGTTGACGGGATTCATTACTTTGAATGTCCTCA AGGATTCGGGGTGTTTGTTCCAGCCCACAAGGTCCACAATCTACCTCCCCCATCGCCTTCAAGCCCAACA TCAACTCTTTCATATAATTCCAGTACTAGTATATGCAGTAGAGAGAGCAAAGACTCAAAACCAAGTAGTA GGATACCGACGTTAGGTTTAGCTGGTGGTAAACTCCCAAGACCAAAAACATTACCTGTGTGCAAAGACTC CAATTCCAAGCTGAAGCCCAACAAGAAAAACAGTAAGAACATTGACTGTGGGAGGAGTGATACTTCTTCA GAGAAGTCCTCAACATCTAGCAAGCTGTTTCAATCCAAGAAAATTAGTCCTGTACACACTAATATTACCC ATTCAGGGTGGACAGGAGATAATAGAACTAAAGGTAAAAGGACTACAGATACTCAGGTTAATAAACTTAA ACCAAATCATAATACTACTTTCACTGTGAGCGACAACAAACGACAGTATGCGAGGGTGACCTCACCTAAG GACAAACCTTGTAGGAGTAGTAGTACAGAAACTAGTAGTAAGACTCTTCTTCAGAGGAAACTTGCCCGCA ATAAAAATGTGAACAGTAAACTTAACTCCCGCCCAAGTCTGAATGACTTGACAAGGACGTTTGAAGAAGG TGAAGCAGATGAAAATAGGAGAGACAAACCTGATATTGTGGAAGGTTGTTACTCTAAATTGAATGAGACC TTTGAACTTGACAAAGAAGTGTCATCGTTTTTCCAGGAATCTTGTTCAGGAAGCCTTGGTTGGGACGACT CGCATTCGCTTAGTCCGCTTGAAGATAGCTCATCTGGTCGTGAAAAATCTGATTCTAGTTTAGCATGGGA CTTTGAAGTCCCTCAATCTTCAACTCCAGTTCAAATCCATCTCCAAGTAGGTTCAGATATTAGAACTTCT ATACCAGAGGAACCTAGGATTTACCCTCTAGGTATTGGAGCCACTGCTCCAGCGTTCCCAGTGGATAGTC TATCTAGTTGTGACACTGAAAATACAGATGAAGAAGTGGAATATAATGAATTTTTGGCAATTCCAACATT CTTAGATACGCCAACAGGTCGCTACAAATTTGATCTTTTAACTCCGGAAGAACTTGAACAAGCTTTGAAT GAATACAATCTCTTGCCTGAAGAATTACAGGATGCAATAGAATTTGAGCCTCAATTCTCCGATGTTAAAC CAAGGATTTGGGAGCCCATTACAACGGTTGAAGACGAGTTTTTAAGGGAGTCGAGCAACGCTCTTTTCTC AGTTCCCCTGACTGCTATGGATCCTGAGCTCAAGGAGAAATATGAAGGCATTGAAACACCACCAGTGGAC AGTGAGGCTACCACACCACTAGGAATTGCTTCAAATGGAATGGAAGTAGATTGTTATCCACAAGAAGTGT TTAATAATGATGGTAAACAAAGAGAGTATCCTTCTGTTTTACCAACACCTACATCTGATGAACATACTGT TTGCTTGGAGAAGTATGGGGAGCATGTGCAATCGCAGGGTACTCTAAGTGATGCCAATGATACAACTCTT GTAGACAACCCATCTAGTATGGACGATGGTGTAGATCTCTCTGAGGACTTTGAAATGGAAGTGGATCCTC ACAATACAACTTATGATGTGGATGTTGACCTTCTTGATCAGGAAGATGTAGAAACACCCACTTCATCTTT TGTCATTCAGAAGTGTGTTGAGAAGCGTCAAGAAGGTGATGGTCAAGAGGTCAAGGTTGGCATGCACTTT GAGAGCAACAATAACAGCCAGGTGCCAATGTCCCCTGTGGATCTTCTTGAAGGAACTCAGCATTTAAAGA CCTGTGATGTGCAGGTGCCCATTCCAAAGACAGATAAATTTGGTGCCGTTATTGTTTCATCTGGAACGGA TGTGGAGATATCGCAGCATAACGGAACTACTAGTGGAAGGATAGTGACATCGATGCCTCAAAAGACTTGC TTTCCTGTGACTTCTAGTGAAGTTCAACACAGCAAATTGGAGCGTATTATGATGGATACTGAGGAGGACC TCAAATTTAGGATGGATGAGATGGCAGTAGAGGCCAATATGGCTGATCTTGATGAGAATAAAAGTGTGGA GTCAGAGTGCAGCAGAACGGAGAGTGACAGAGCTACAGATAGACGGGATACGAAGACACATACAGGCCAA CCTAATGGTGAGTTACAGGCTGTCATGGAGGTTGGAATGTGTCTCATGTCCCAAAATGAATCTTCTGTTA CAAATGGTGTCAGGAGTGGAATGAAAAGTCCCGGCCAGCACTCCAAAGAAGAGGAGAAGAAGGATGAAGA AAAAGCAAATGGTGTTCCTAAGAGAAAATCTCTGTTGCTTACACCAAAGAAGGTCTCTAAGAACATCACT TCTTCACATTCAAGCCATTTCCAAGTTACATTAAGTAGACCAAAGACAGGAGCTCCACCAACGTCCAACA CATCATCCAAACCTCCACCTGCTCAGAGCCAAGCTGAGAAAGACAACAAGAAAACATACACACCATCATC CTGGAGGAATGAGAAGAATGGATCTACAAAGACTGGTGTCATCCCTAGGAGGAGATCTGCAGAGAACCGA CAAACAAGTCGGTTGAACGACAAGAACCACCCAGGAAGACACTCGGCTGATGCCACACACCTGGTCCAGA AGCTCCAACCCATCTTAGACATCAAGGAAAGCAGGAGAGCAGAAAGTTCTTCATCAATGGAGGTGGATCC AGGAAGCATCACTTCATCTAATAGGAGTATGAGGTCAGAGGTGACTGCTAGCAGCACAACATCAAAGATG AGCTCAAAGAATACTCAGAATGGCAAACCTAACAACAAGACAACTCTGTCTTTGAGGAACTCCTCGGACA CCAAGAGACATGAGCGTAAGCCTAGTTCCTCTAGTGTCACTTCAGACCACTCACAGAGAACTGAGTCCAG GACCTCCATTTCTTCTAGACCAAGCTCCAATAGTTCTAGAGAAGCGAGACATGCTCGACGCAATCGCGCA ACAGTCGGTTCCAACTCCTCCACCAGAAATGTGACATCAACCAAGCCTCCTCCATCAAGCACCACTTCAC GCAATCGACAGAGTGGTACAACAACCAGTGGACGTACTACCAAGTCTGCATCAAAGACTAGTCAAGATAC CACTCATGTAGATGCAGCTCCTACAAGAAAGATTGCTGTTCCATCCAAGAAATCTTCTGATCATCATAGC AAGAAGGGATCAACTAACCAGAAAGACCCCCATCAGGACAAACATGGTCACAAACCCAAGACGACAGCCC ACACCCTACATGCATCCCCACCAGATCTGGTCTATACGTCGCTCGTCAACGGTGAAGCATCGCAAGAGAT CAAACGTCTTGAGTCGCTATGTGAGACAAGGTTTCACCAGCTTTCCAAAGCCAAAGAACAACTCCAGGAT GCTACCAAGGGTTTTGATGCCATGGCAACCATTGTCAAATACCTCTCACATGAGGTCGATGGCTTCTCTG CTCCCTATCTCAAAGCTAAGAATGAAAAGCTGCAGAAGCAGGTGACAATGTCAACAATTAAAACAGCTCA ACAAGAGGCAGAGATTTGTCGTCTCCAGGAGGAGCTAAACATGGAGACACATACCCATGAAGAGGAGATT AGGAGAACAGAGCTCCTTCATATGGAGGAGATTAGAGATCTTACCGAGACACTCAGGGCCAAGCATAGCA AGGATATACAAACAATGGCCACTGAACACACACAGGAAATTAGAAGACTAGCTGATGGCCACCAACAAGA GATGTGTGACATGACAGCGAGTCATCAAAGTTTAATCCATGATATTGAGGACCAACATGCAGAGCATGTA GCTCAGATCAATCAGAATCACATAGATCATATAGAAGAGATTACAAGAGAGAAAGACAAGGAGATAGAGA CTGTTAAGAGGGATGCAGAGGAGAGGATTAGAGAGCTACAGGATGAGATTTTCAAATGGAAGTACCAATG TGATTGTCAAATCAAAAGAACGCAAGAATTAGAGGAAGCTTTAAGAAAAGATGATGATGCCAAAGTTCAG GCTGCCATAGCTCAGTACAAGCATCTACCAGACGAGGTAGCCAGTATGAAAGCTGTCATGGAGATTAAGA ATCAAGAGATACATGACCTCAGGATAGGAAAGATGGCTCTTCAAAAAGAGGTTGACTTGATTCCTGATAA AGATGAGAGGATTAAGAACTTGACAGCGAAGGTTGAAGACGTCCAAGCACTCATGCAACGCAAAACAGAA TATGAAAGGCAACTATCAACTGAGCATGTTCACTTGCGGGCCTCATACGAGCGTGAGAGTAGCGTCAATA AGAGACTTTCCATGGAGAACGAGGAGTTGATGTGGAGACTAAACCAAGGTGATAACCTTTCACCCCCACC CCGCTTCAAAGCAACGTCGACCCCTTCACCGTCCCCATCACCGACAGGAGCACGGAAAGGCTTCTCGCGA TCAAGCTCCACGGAGAGTCATGAAAGCGGCGTATTCTCACCAAACCATCCGCATTAATCGTAAAGATGAT GATGAAGAAGAAGGATGTGCTCGCATGGGTCTACTAATGAGGTACAAGCAGATGCGTTTGAATGTTCAAT GAAGATGCAGGATATCGCTTGTATTGGTCAATACCACCGTGGTATCTAGTAGAAGATGCCTTCATCGTAT GCCCAGAATGTCATCATGTGGATGATAGAGGGCGCTTCTCATCAGATCGCTGAATATTCCACATTGCAAT ATTCTGAAGATTCAACGAGTTGTGATTTATCTTCTTGCAATATTCTGAGACAAGAAGGAAGATAGTGATA TAAAATTTAATGGGTTTTGAGATTAAGGTCATCAAAAGGTTAAATGTTGCAATATTCGAGTAGAGGATGA TTATGATAAATGAGGCAACGATGTTACAAGTGGCATATTATACAAAAATTATGTGCTTAGCAAATGATGC ATCGGAGCAGTAAGATGAATGTGAAACAAGGATTTAAAGTGTGTTTGAAAGGTTTTACTGAAATTATAAA TTTTAAACAAACAGACATGAATGGTAGTCAGTACAACATCAAACAGTAGACATTTATTTGAATTAAACCT TGTTATGATAATAAGTAAAGTTGGACTGTAGTGTATTCAGCAGTAGAACAGTATGTGTACCTAACAACTA TTTCATTTTGTAAACAGTAGTCAAATAGTCAAAACTGTTTGAATTCAGTAAAAAAATAATAATGATTGTT TGCATCTGAAATTAGTCAATGTTGTGAGATTTAACAGTAATAAACTCATATAATGCCAATACTTTTCAGC ATTCTCTTGATTGTCATATTATAATATGAGCCTCTGAGATTTCAATATGTGAGGAAAAAAGCAACTCAAG AAATAATGAATTAATTTAAAAAAAGAAAATAATATGAAAGAGAGATTGAAATGTACTTAATACTGAATAA GTAACCTCCATAGTTATGGTGAAACATGAAATAAAAATATGCTACTCTTGAAAATGGACATAAAAGTATT TCTGTTTCTCTCTTTCATATTTGTTTGCCACTTATTATAAATTATACATGCCATGAATTTTACAAAATCT TCATTTCTTTTAAGAATATATATCATCATTAAGCATGATATTTAAAGCTGGTTGTTCAGAAAAATACACT GATTTTTATATAAATAGTGTGTCCCTTGCATGCTTATTAATCTCCATAAAAAATATTCCTTTGACTACTA TTTTCTTGTGTCTTTTGGAGTTCTAGTGATTATTTCAATCACTTAATTCAATGTCATAGAAGTGAAACAT GTGATATACTTTATTTAGAATGGAAACTACTCTTTTTTTTCTTTCGCTTTTTTTCAGTGTGCCATTTATA TATTCTTGGGTGCCAAAGACAAAGATATATTGCCTTTATTTGGAAATAAAACTTTCTGTTTTGTTTGTTG AAGATAGTCTACTATTAGATGTTAAGCACCAATAAATTATTCTAAAGCAGTTCACTTGTTAAGTATTCAT GAAGCGATAGGTTACAGTGCCAGTAAGGCTTAAAGATCATATTCGTTCAAATATTCTTGTGGGGAATAGA TTTAAAGATGAGATAAATGATGAATTATCATAATACCATGGTAATTGAAGAGTTGTTGGTGTAGTCCCAT TGTGTAGTATCTGTGTGATTGTGTTAAAGGGGTTTAATTGATTGTTTCCACCAAGAGTATGACCTCTGAC CTTGTATCCTCTCCCGACACATATCTCTTTCTAAAATATAATGAATATTTCTGATTGTAAATAAAATGTT TATTTGTGTAATTATATTCTATTGATTATTTTACTTTATTTTTAAAACTTTCTATCAAATTATGCTCTTT GTAATTACCTCATGAAAGATCTGTATATCAAGCATTGTGTAAATGATGTGTCATTTCATAGTTAAATTAT TCCTATCTAGTGGATAGATTACGAACATTGCACTTTACCAAAGCTTACATCTGGATAACAACTATTCCTC TTAATAATTCTAACATTAATATAGATCGTGCTATCAGGAATAGGCTAAACATGAGCACTGCACATATTAA ATATATACTAATTATACATATTAAAACATACTGCCAATTGAATCTTTAAAATTGGTGTTTGGAACTAGAT ATTGTTTGGTTAGATGCCAGATGTCTACCAATATAGAAGTAGATAACATAAGAGACGCATTGCGGAAGCT TGATTTGAATAGAAATCAGAGCTTGGTATTCTTAGATGAAAGACACTGCATGCTAGAACATGTGTGTGAA CATAAAATTGTTTCATATAATTGAAACAAAAATCAGGTATATATCTGATTTATGTGAATAATTTCAAGAC ATTGCTAATGTAAATGAAATTATCAAGTAGTGAACAAACCATTTTTTCAAGTTAAGGAATTCATATTCCT GCAGAATACTTGGTTAGATGATAAAATATGCTCTAAAGCATTGATTATGAAGCAGATATAATTTAAAGTA GAGGAAATTTCATATTTATTTTATGGGGGTTTAGTTGTTGCAGATGTGAACTTCGGTAAAGTGCAATGAT CATGGATTGCATGTTTGTTTATTTCTATCTTAGGGAAGTAAGGGACCAATCTATGAGACTGGTTTCTTGA TCCCTTCTTACTGCTTTAATTGGTGCTACTCTATCAAGTGTTAGATCGGTGATGGGTTTTCATTACATGT TTTAATCACACACTGCACCACAATCTTCTATAGTACACTATGATCTATAGTATTTAGGATGGTTGATGAT GTTTTAGTGTTTAGATTTTAAGAAATCTTCCTTTTTATGGATGTTTTCCTTTTTCCCCTTGTGTCTTCAT TTTTCACCTTCCCTCTATTTGTGATTATTTTCTTATTTATCATTATTTTCTTAAATAAAATCAATCAATT TTGATGTAGTTTTTCATTGCTTTGTTTTTAATGAATTATGAAAAAAAAAGAAAATACCACATTTGTTATT TTTCATTTATAATCTAATTCTTGAGTAAAAGATATGTACCGGGAACACTATATGAGTTATGTGAAATACG GGGGAAATAAATGAACACATTAATTCTTTTGAAAATCTTATAACTTGTCAAATAATGGGTTAAGAAGCCT ATGTATTTGAATCTAGTAAATCTGTACTTCATAATTTTAGGATTGTAGATATCATGTTTGAACAAGGTGT TGCAAATTTCAGACAAAGTGCATTCTCTACATTCCAAAAAAAATGTTGGTAGTGATAGTTCATTTTGATA GGAATGTTAATAATCAAAACAGGATTGGCTTACAAAAATGTTAATTTTATATGGAGGAAACATAAAAGAT ATTTTAGTTCTTAGGGCATAATCATGTGTATTTGTTGTAAGCTAGGCACACCCTGTCAGATATTATTTGT CACTTTAACATTGTTGTCATGTTAATGGTATATTTGGTGACTGTTAACAGTTAGCACAGCCAATAATATC GTAAGCTATGATGATTTCATTATCTTCATGATAGCCAGTAAAATACGAACCACTACTGGCTTTTCAACTC TCTCAAAGTTTGCATCTTGTAAGAGAATATTGAGAGTAAAATATTGAGCTGTAACTGTCAATGCAGATAG TGTATACTATTTAATGGAGCCAAATAGAATTGTGATTAATTCTGAATAGTAACTGTAATAGAAAATTTAG ACAAATTTGACTGTTGGTTCCACATTCTCCCTTTTTCTATTAACATATTTTTAGCAAACCTTAGCAATGA GTAGACGTGTCTGTAAGCTCCCTGTACAAAAGTAACATGTTGCAAGATGCTATTTTTGTTGCATCTGTCT TTGTATAAAGTTTTGAAGTGTTCTTTCATTGTGTCTGTATATTTTCTCTCAATCTGTTTCTCTTCTAAGC TCTCTTTCATTGCATTATGGTTCAACATGTGTGTTAGATTTCTTGGTGTTTTAGCAAATTTATTTCTATC TGTGATTGTCTTTCATGTTTAAAGGAAATATTCTGTGTGAATTGTTTAAAAAACAAGCATTAATGTCATA GTTTCACTCTGTGCAAATTGATTTTTCAGCATTTTCTTTATGTATTTATCCTTTAACACCACCTTTTATT TCTTTATTGATCTTAAAAATAGAAATATTGTCTGTTCAAAAGAACCAAAAGAAATATTTTTATTTGTTTA GCAATTGGACATATCATACTTTAACTATCTACTTAATGTAGATGAAACAAATTGCAGCAATCATGTCACA TTTATAACAGCAATATCACTTAAATTATTGAACTAAGTCACCTCAATATTTCGATCTCTACTTTCCTCTA ACAGATATTTCTCAAGTTTTTAGTAAAGTCCTGGCTCTTTCCATTTGTGATCATGCTGTAAGGAAATGAT GTACAAACATTTGATCAAAACACAATAAATTTTTTCTTGTAATGGCACTTAGTGTGTGAAAATGAATTTT AAAGCAGCATTTAATGGCAGACAGACAGACAGATAAAAGAGAACATAATTGATATCAATTTGTCTGTTTG ATGAAAAAGTCTTGTCCTGCAATCTAGTTGTGTGCTTGTTAAAATCTATAGTATGTTGCTTTCTGGTGGG TGTTTCATGAAAGTTGTCAGCACTGACTGTTACTACGGTAACTGTCGGAGAAAGACAACTTTTCAGTGTT GACAACTTTCATGAAACGGTCCCCTGATGATACAATGTGTAAAATAGATACTACTCATGTAGGGTTGTGA AGATATATGTGCGCATTCTATATGTTACCATGGATATTGGTGAAAATCCAAATGCTTTTGGTGTGTATTT ATATATTGTGTCTGTACATTATGAATGATGCCAATATTATAAATTAACATATTTAAAAAAAGACAAAATA TTTATTGCAGCTTTTGTGTAATACATGCTTGTTGTTAAAGGAGAGAGGGAAGGGGAGTGTATTTCAAAAT GAAGTTTTTGACTTCCTTATTTGTGTATCAAAAAGAATAATAATCATCATGAACACATCTTTTTATGTAG CTGTAAATTTGTTGTTGACCCATAAATTTGTTGGTTTTAAGAGAAAATGGGAAATGTTTATTTCATGTAT ATCTTCAAAATATTTGCATGTTTTATTTCAGGTGTACAATAAAAGTTTTTGTTTA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds