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Echinobase Accession
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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT119316.1 TSA: Strongylocentrotus purpuratus WHL22.469712.2 mRNA sequence CATGATCCTAAATGAATGAAGCCAAAGAAGGAAACAATGTCTCTCTGTCCTAAGTAGACGTCTTATATCA GTCTACTCAGGTAGAGTCCAGACTGCCCATATTGCAGCCAAGGAGGTCTCTCCTACCTGGACCCAAGACA CACTACCCACTCCGTAACACCGACATCAAACCACCGCACCTCGTACCATCCACTCCTAACGTACCATTCC GCCATCTGGCAGTTGGACAGCGTGTTGAGACCACAGACGGACGGGTAGGTCTCCTGCACTTCAAGGGCAA GACACACTTTGCCCAGGGATGCATGTGTGGCATCGAGCTTGACGATCCCATCGGCAAACACAACGGTTCC GTTGACGGGATTCATTACTTTGAATGTCCTCAAAGATACGGGGTGTTTGTTCCAGCACACAAGGTCCACA ATCTACCTCCCCCTTCGCCTTCAAGCCCAACATCAACTCTTTCACACAATTCCAGTACTAGTATATGCAG TAGAGATAGCAAAGACTCTAAACCAAGCAGTAGAATACCCACGTTAGGTTTAGCTGGTGGAAAACTCCCA AGACCAAAGACATTACCTGTGTGCAAAGACTCCATTTCCAAGCTGAAGTCGAACAAGAAAAGCGGTAAGA ACATTGATTGCGGAAGGAGCGATACTTCTTCAGAGAAGTCCTCAACATCCAGCAAGCTGTTTCAATCCAA GAAAATTAGTCCTGTACATACCAGTATTACCCATTCTGGGTGGACAGGTGAAAATAGAACTAAAGGCAAG AGGACTACAGATACTCAGGTTAACAAACTAAAACCAAATCATAATACTACTTTCACTGTGAGTGACAATA AACGACAGTATGCGAGGGTGACATCACCGAAGGACAAAGCTTGTAGGAGTAGTAGTACCGAAACTAGTAG CAAGACTCTTCTTCAACGGAAACTTGCGCGCAATAAAAATGTGAATAGTAAACTCAACTCCCGCCCAAGT CTGAATGACTTAACAAGGACGTTTGAAGAAGGAGAAACAGATGAAAATAGACAAGACAAGCCAGACCTTG TTGAAGGTTGTTACTCTAAATTGAACGAGACCTTTGAGTTGGACAAGGAGGTTTCATCATTTTTCCAGGA ATCTTGTTCAGGAAGCCTTGGCTGGGACGACTCGCATTCGCTCAGTCCGCTTGAAGATAGTTCCTCTGGT CGCGAAAAATCAGATTCTAGTTTAGCGTGGGATTTTGAAGTTCCTCAATCATCAACTCCAGTGCAAATCC ATCTCCAAGTAGGTTCAGATATCAGAACTTCTATACCAGAAGAACCTAGGATTTATCCTCTAGGTATCGG AGCTACTGCTCCTGCATTCACCGTGGATAGTCTGTCTAGCGATACTGAAGATGAGGAAGTGGAGTACAAT GAATTTTTGGCAATTCCAACATACTTAGATACGCCAACGGGTCGATACAAATTTGATCTTTTAACACCTG AAGAACTTGAACAAGCTTTGAACGAATATAATCTCTTGCCTGAGGAATTACAGGATGCAATAGACTTTGA GCCTCAATTCTCTGATGTGAAGCCAAGGATTTGGGAACCTATTACAACTGTTGAAGACGAGTTTTTAAGG GAGTCGAGTAACGCCCTTTTCTCAGTTCCCTTGACTGCTGCTATGGATCCAGAGCTCAAGGAGAAATATG AGGGCATTGGAACACCACCAGTGGATAGCGGGGCCACCACACCACTAGGAATAGCTTCAAATGGAATGGA AGTAGATTGCTATCCGCAAGGGGTATTTACTACAGATGTAAATGGTAAACCAAGAGAGTACCCCTCTGTC TTACCAACACCAACATCTGATGGACATACTGTGTGCATGGAGAAGTATGGGGAGCTTGTGTTATCACAGA GTACTCTAAGTGATGCCAATGATACAACTCTTGTGGACAACCCTTCTAGTATGGACGATGGTGTAGACCT CTCTGAGGACTTTGAAATGGAGGTAGATCCTCACAATACCACGTATGATGTGGATGTGGACCTTCTGGAG CAGGAGGATGTGGAAACACCCACGTCCTCTTCTTTTGTCGTTCAAAAGTGTGCTGAGAAACGCCAAGAAG GGGATGGTCAAGAGGTCAAGATTGGCATGGTCTTTGAGAGCAACAACAACAGTCAGGTGCCACTGTCCCC TCTGGATCTCCTGGAAGGAACTCATCATTTAAAGACCTGTGATGTACAGGCAGCCATTCCAGAGACTGAT AAATTTGGTGCCGTTGTTGTTTCATCTGGAACCGATGTGGAGGTATCCCAGCATAAGGGAACAACGAGCG GAAGAATAGTGATATCAATGCCTCAAAAGACTTGCTTTCCTGCCACTGCGAGTGAAGTGCAACACAGCAA GTTAGAGCGTATTATGATGGATACTGAGGAGGACCTCAAGTTCAGAATGGATGAGATGGCAGTAGAAGCC AACATGGCTGACCTGGAGGAGAATAAGAGCGTGGAATCAGAGTGCAGCAGAACAGAGAGCGACAGAGCTA CAGATAGAAGGGATACGAAGACACATAGTGGCCAACCTAATGGAGAGTTACAAGCTGTCATGGAGGTTGG TATGTGTCTCATGTCCCATACTGAATCTGCTCTCACAAATGATGTCAGGAGTGGGATGAAGAGTCCCAGT CAGCACTCTAAAGAAGAGGAGAAGAAAGATGATGAAAAACCAAATGGTGTTGCCAAGAGAAAATCTTTGC TGCTTACTCCGAAGAAGGTCTCCAAGAATATCACTTCGCACTCCAGCCATTTCCAAGTCACGTTAAGTAG ACCAAAGACCGGAGCACCAACGACGTCCAACACGGCCAAACCTCCACCTGCTCAGACCCAAGGTGAGAAG GACAACAAGAAGAGCTATACGCCATCATCCTGGAGGAACGAGAGTAATGGATCTACTAAGACTGGTGTCA TTCCTAGGAGGAGATCTGCAGAGAACCGACAGGCAGGTCGGTTGAACGACAAGAACCACCCAGGGCGATA CTCAGCTGATGCTGCTCACCTGGTCCAAAAGCTACAGCCCATCTTGGACATCAAGGAGAGCAGGAGAGCA GAGAGCACCTCATCAATGGAGGTGGATCCTGGAAGCATCACTTCATCTAATCGGAGTATGAGGTCAGAGG TCACTGCTAGCAGTACAACGTCAAAGTTGAGCTCAAAGAATGCTCAGAATGGCAAACCTAACAAGAAGAC AGCATTGTCCTCGAGGAACTCCTCTGAAACCAAGAGACATGAGCGTAAGCCTAGCTCCTCCAGCATGGCG TCGGACCACTCACAGAGAACTGAGTCCAGGAACTCCATCTCCTCTAGACCAAGCTCCAATAGTTCCAGAG AAGCGAGAAATGCTCGACGCAATCGCGCAACAGTCGGTTCCAACTCGTCCGGTAGAAATGTGACCGCCAC CACCACCACCACCAAGCCTGCTACGTCAAGTACCTCTTCACGCAGTCGACAGAGTGGCACCACAACCAGT GAAAGAACTACCAAGTCTGCATCAAAGACTAGTCAAGATACTACTCATGTAGATGCAGCCCCCACAAGAA AGATTGCTGTTCCATCCAAGAAGTCTTCTGATCATCAAGGCAAGAAGGCATCCACTTCTCAAAAAGATCC CCATCAAGACAAACATGGCTACAAGCCCAAGACGACAGCCCACACCCTGCATGCATCGCCTCCAGATCTG GTCTACACCTCCCTAGTCAACGGTGAAGCATCGCAGGAGATCAAACGCCTTGAGTCGCTATGTGAGACAA GGTTTCTTCAACTCTCCAAAGCCAAAGAACAACTCCAAGAAGCTACTAAAGGTTTTGATGCCATGGCAAC CATTGTCAGCTACCTTTCACATGAGGTTGATGGCTTCTCTGCACCTAATCTCAAAGCTACGAATGAAAAG CTGCAGAACCAGGTCACAATGTCGACAATTAAAACGGCTCAACAAGAAGCAGAGATCTGTCATCTCCAGG AGGAGCTCAACATGGAGACACACACCCATGAGGAGGAGACAAGGAGAACAGAGCTCCTTCACATAGAGGA GATCGAAAACCTCACTGAAACACTCCGAGCCAAACATAGCAGAGATATCCAATCAATGGCTACTGAACAC ACACAAGAAATCAGGAGACTAGCTGATGGACATCAACAAGAGATGTGTGACATGACAGCGAGTCATCAAA GCCTAGTGCATGACATTGAGGACCAACACGCAGAGCATGTGACTCAGATCAATCAGGATCACATGGATCA TATGGAGGAGGTGATCAGAGGGAAAGACCAGGAGATAGAGGCTCTCAAGAGGGATGCAGAGGAGAGAATC AGAGAACTTCAGGATGAGGTATTCAAGTGGAAATACCAGTGTGACTGTCAGACGACGAGAACACAGGAGC TGGAGGAAGCCTTGAGGAAGGATGATAACGCCAAAGTTCAGGCGGCCATCTCTCAGTACAAGCACCTACC AGATGAGGTAGCCAGTATGAAAGCTGTCATGGAGATCAAGAATCAAGAGATACATGAACTCAGGATAGCT AAGATGGCTCTACAAAAAGAGCATGATCTGATAGATAAAAAAGATGAGAAGATAAAGAACTTGACCGCCA AGGTGGAAGACGTCCAGGCACTCATGCAAAGAAAGACAGAATATGAGAGGCATCTTTCAACAGAGCATGT CCACCTGCGAGCTTCATACGAGCGTGAGAGTAGCGTTAATAAGAGACTATCCATGGAGAACGAGGAGTTG ATGTGGAAATTAAACCAAGGTGATAACTTTTCACCCCCTCCCCAGTTCAAAGCAACCTCTACCCCTTCCC CTTCCCCTTCACCTACTGGCGCACGGAAAGGCTTCTCGCGATCAAGCTCCATGGACAGCCATGAAAGCGG CGTATTCTCACCCAACCATCCGCATTAATCACGACGATGAAGTACAAGGATGGGCTCGCATGGGTCTAAC AGCGCGGTGTAACCGTGGACCATCGGCAGCAATTTTTCAATGAAGTACATTGGTCTATACCGATATGGCA TAAATGAAGATGTCTTGATTGTATACCCAAATCATCATCATGTGGATGACTGAGGGCTCCCCAATTCAGA CCACTCAACACTTTCCCTCCATCTTGCAATATTTTGAAGAATCAGAGGATGATATTGTAGTTTGGATTAT CTCCAAGATTCTACAATGCTTATCTTAAAAGTTATTTGTTGCAATATTTCAGGAGAGGATAAAAAAAAGT GAAATAAGAATGCTACAAAGTGGCACATTATAAACAAATATTGATTTGTAAAATAAAAACATGCATCCAA GCTGTGCAAATATCATTTGAAACAGGGATTGATGCATGTATGGAAGGTTATACAGTAAGCAAAGAATTTC AAGCAAAGAAGATCATGCCAATTTTATCATATGTCGATCATTACAACATCAAACAGTAGGTTATAATCTA AATTCAAACTCATTGTAATTAATAGTATATTGTGTTGTACCAGTATCTATGGCAGTAGTAACTGATCTGT TTATTGGCAAACATTTCATTTCATAAACAGTAATGAAAATACTGGGTCAGAATTTCTGTAAAAATACTTA ATTGTCAGAAGTCTCCTAAAAGAGTATATTTCTGAAATGATCTAGTAATACAAGTTGTGTAATGAAATAA ACTTTTCTTGTCAAAGTTAAGAGCTTTAACAGTAATAAACTCAAGAGTGCAAATACCTTTCTGTATTCTC TCAGTTGCCATGATATAACTGTAAGCCAATTGGATATTGAATATGTGAAGCAAAGTCAACTCAAGGGATA TTGAAATAATGACTATTATTTTAAAAAGATGAATAAAAGAGAAAGAGATTACACTGTACTTAAAAACTGA TGTAGTAGCCTTTGTTGTAATGATGAAACATGATATAGTATGCTTCTTTTGGAATTGGACATAATCTTTA ATAGCTGAAGGATCTTTGCTACTCTCTTCCATCTCTAGTTCTCACTCATGCCTCATTATTAATTACGCAA GCCATGGTTTGACACACATATGATCTACATGATTTGTTTAGACTCCAGCTTTGGACATTTTATCATGACA TTATTCAGCATGATATCACACATATATTCCATTTATTTAGTGAAACAAACCAAATTTTATCCCAATAAGT ATCACCCTTGCATGCTAATTTTATGTCATCACAAAGATTGCTTTGCCAAATTTTTCTTGTGTTGTTTTGG AGTTTCGATGATTATTTCAAGTATTTACAAAAGTGGAACATGTGCTAAACTTTGTTTTAGGATGGAAATA GTCTTTTTCTTTCTTCGGTGTGCCATTTATATTTCTCTTGGGTGCCAAAGACAAAGATATATTGCCTTTA TTTGAAAATCAAATGCTTTTTCTTTCTTTTTTTGGAATGTTAGTAAGTGGTTCTATGATATTTCATTTGT TCATCTTTATGAGGTGAAAGAAATGGTTGCCATGCCAGTTATTAAACCTAGATGTCATTGAAGATCTCTG AATTTCTTAATGTATGTTGTGAGGTGTAGATGTGAGGAAGGGTTCAATGATGTACTCATCACACATTCAC AAGCGAAGAGTTCTAGCTGTAGTCCATGGTGTAACATTTGTGTGTTGGTTTTGAAGGAGTTTAATTGATT GTTTTCCATCAGAGTGTGACCTTTGACCTTTGTATCCTCTCCCACCCTGTATCTCTCTCAAAACAAGATG AATATTTCTGATTGTAAATAAAATGTTTATTTGTGTAATTATAATATTCTATTGATTATTTTCCTTTATT TTTAAATTTTCTATCAAATTTATGCTCTCTGTAATTACCTCATGAAAGATCTGTATATCAAGCTTTGTGT AAATGATGTGTTATTTCATAGTTAAATTATTCCTATCTAGTTAGTAGATCATGGACAATGCACCTTATCA AATCTAACATCTGGATGATTACTACTTCTCCTAACAATCAGAATTTTTGTTATATGTAATTGTTGTCATA TCAAGGGTAAGCTATGTACAAACATACGCATCTGAAACCCTTTGATTTTGCTGTTAAAACTGGATAAACT GGATTAATAGTATCATGTTTTATTTGCTGAAACACCTGATCATGGCTGCTCAGCCAGGGGGTAATGATAG TATTCACTGCTTTGTTTCTTAGGGGAACAGCACTGTACAAATCAACTAATGAACTGTATTTTCATATATC GGCTAAATCAGAGTTAATTTGTGATTTTGACTGATAATACTGAGATACCTTAATGTAATATAAAACAATA TGAATACTTAAAGTCAAATACTAATTGTGGAGCACCAGGTTTGTCAACTAAGACAGACATGAGCGCAATG ACAAAAACCCACTATTAATGTTTCAGGAATTACGATCATTGTATATGGTTATGATATATATATATATATA TATATATAAATGAATGAAGACTGATGCTCAGGAGCATCCAAGATAATGGGGAAACAATGAATAAGAAAAA GAAATTTTCATATATTTTTAATGGAGAGTTGTTGCTGCAGATGTCTAGCTTTAGTAGGGTGCATTGTTCA TGAACTACATTTTTGTCTATCTTAGGGAAATTAGGGACCAATCGTGAAGACTGGTTGCTTATCCCTTCTT ACTGCTTTAATTGGTGCTACTCTATCAAGTGTTAGATTGGTGATGGGATTTCATTACATTGTATCTGTAA AATCATACACAGCACACAGCACCACAATCTTCTTCAGTTGTACACTTCAAAATAGTATTCAGGATTGATG ATGATGTTTTTTTGTTACCTAGGTTATATCATGATAGTTTCCTTCACATAGATACTCTCTTTCTTTGTGT CTTCATTTCTTCTCATTCTCACCTTCCCATCTCAATTTGTATTTCTTATCTTTTTATATTATCAATAAAT TTTATTTAATGTAGAGTTTCATTGCTTCATTTTTTAATAAATTATTGAAAATGTGAATAATCTCATTTTC TCATTTTACCTTATATTTGGTCAGTTCTTGGATAGTGAGTTAATTTTATGATTTATTCATAAAACATAGG AAGCAGAACTTTGAAAATGAGTTATGTGAAATTACTGGAGCAAATAAATGAACATATCAGTACATTTGAT TACCATTTATGACTTGTCTGACAATATCTGTAGAGGCATTTTTATATGAATTAATTAATCTGTTCAATTG AACCCCCTAATGCGAGGGTATGAAGTACGGACTGTAGATATCATAAAGATGTTTGAACTAGATGTGTAGA ATATCAGACAAAATGCATTCTCTACATTCCAAACAAATATGGTAGTGATAGTTCATTTTGATAGGAATGT TTTTATTTGATACTAAACCAGGAAACGGCTAACATCGTTTGGACCTTAGACAAAATATCAAGCGTATTTA TTTCTTTAAGAATATACTCTTTATTCTGTATGTCCCAGTCAGTCATACCCTAGTCATTCCTTATCACTAC ATTGTAGACATTTACTGTATTTGTTAATTAAATTTGTTATTTCATGTTATCAGTATAATTATCAGTTATA GTTATCAGTATAAAAGCTATAATGGTTTTAGTGATTAATTAATAGAAGCCAGGAACAAAAGAGGCATTTA TGAGTCTCTTTACTTTCCAGGACATTTTTTATCTTTGAAAAAGAAAGGAAATATTGGTAATGGACTATAA CCGTCAATACAGATTGTCTTGAATAGTTTATGAAGTCAAACAGGTTTGCGATGAATTATAACAAGTTAGG AGTAATAGAAAGGCAAGGATATGAACAAGAAACTATATACACTCTTTCTATTTCCATTTCCAACTCTAGG ATTCAGTTTTAGTAAGGAAAATTCCTTTATAGCAATGAGTAGACGTGTCTGTAAGCTCCCTGTACAAGGC AACAGTTTGTATGTTGCATGATGCTCGCTCTGTAGGTTGCATCTGTTTTTGTATACAGTTTTGAAGTGTT CTGTCATTGTTTGTATCTGTATGCTTTTATCTTTCTCTCATTCTTCTCCTTTTATAACTCCTTCATTTCT CTACAAAATGATTATCTCATTTCATCATGCTTTTTGTCAGATTTCTCAATTTTTAGCAAATTGATTTCTA TCTGTGAGTGTCTTTCATGTTTAATAAAGATATCTAATTTGCGTCTTCTATAAAAGCATTAATGACTTCA TGTCACATTGTGCAAATGATTTGTTCAGCATTTTTTCATCATTGCTTCTTATGTATTATTTTACTTTTAA CACCATACCAATTTATCATTAATAACTTTCATAATAGACATTAAATCTGTTTTGATAGAGGAGACTGAAG AAAATATTTCAATCTGAATGTCATCAAATAAACATTTTATGTGTTTGAGATTGTACTTGATGTAGATGGA ATCAAATTGCTGCAGTCATATTAAAATAATATTAAAGCAATATCAGTGAAATTGAACTACAAATCAGAAT ATTTGATCACTGTTTTTCTTCTGATAGATGAAATTACAAAGGTTTTAGTGAATACATGGCTTATCAATTC ATCTGTGATCATGCTGGTGTACATACATGTTATCAAAGCACAGTGACTCTTTTCTTAATAATGACACTTA ATGGTGTGTGAAATAAATTTTTAAAGCAGCATTCATTACAAACAGATAAATGAAAGAGAACATGATTTGT GTACTTTCATCTGTTCATCGCAACTGTCTACTGCAATCTGGTCGTGTGCTCGTCAAAATAAAATGTGTCG CTTTCTCGTGATGTGAAAACTAGAAATTACTTGTAGGAATGTATAGAATAATGTGCACATTTTGAATGTT ACCATGGATATTGTTGAAATCCTATTGCTTTCGATCTGGTGTATTTATATATTGTGACTGTACAGTATGA ATAATGCCAATATTATAATATTTAAAAACAGATAAAATATTTATTGCAGCTTCTGTGTAATACATGCTTG TCTTGTTAAAAAGGGAAAGAAATATTTCAAATGAAGCTTGAAGCTTCCTGATATGCGTATCGGACAGAAT AATCATGAACACATCTTTTTATGTAGCTGTAAATTTGTCGTTTACCCTGAATATTTGGTTGTTTTTAAGA GAAAATGGGAAATGTGTATTTCATGTATATCTTCAAAATATTTGCATGATTTATTTCAGGTGTACAATAA AAGTTTTTGTTTATATCTAAAATTCATGTCTCAAAATGTATTGCTTTGCC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
