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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_011683202.2 PREDICTED: Strongylocentrotus purpuratus serine-rich adhesin for platelets (LOC763960), transcript variant X1, mRNA CGACTCTACTACTCTGTACGAAAATCAATTTCTATGATCCATCCAGCGATAACTCTCCTACTTTCTCACT CCCTCTCTCTCTGCCCACTTCTCACTACTTGACTTGTGTCAGGCCTATCCGTAGCTCATTTGCATACATA TGAGTTAAAAGCAAGAGTGAGGCCACAACTGATATTGTTTCTGTCATTAGTGATCGGTACACGGATCATG CGCAGAGCTGTCTGCATTCCCTGCCAGTGAAGGCAAGAGCGGGAGAGGAAGAGAGAGATAGGGGGAGAGA AATATTGTGAAACGCTTCTATCTTTGCACCAACTGTTCAGTTGAGTGTGCATGGATGTATGGCATATGCC TCGATCTATCCCAAACATGTTTGCGTTGGCATGTTCGTGTTGATACGTCAGGATCAATTCTTAAATCGGG TGCCTGTGGGTCTCTCATGTCATGCACATACGTGATCAGAGTGGATTCTTAGAGCTGCTTAGTTTTGCTG GTGTTGTATTCCTTGTGTCATGGCGTCGAGGAGTAGATACGGACTGATCTCTGCCTACAGTCGATGCTAA TCTGGCAGAGAAATGGCTTTCTCATTCCTCATGTTCGCCTATGACCCTTTCCTACTTAGCCCAAAAGACT CTACTCAGGTAGAGTCCAGACTGCCCATATTGCAGCCAAGGAGGTCTCTCCTACCTGGACCCAAGACACA CTACCCACTCCGTAACACCGACATCAAACCACCGCACCTCGTACCATCCACTCCTAACGTACCATTCCGC CATCTGGCAGTTGGACAGCGTGTTGAGACCACAGACGGACGGGTAGGTCTCCTGCACTTCAAGGGCAAGA CACACTTTGCCCAGGGATGCATGTGTGGCATCGAGCTTGACGATCCCATCGGCAAACACAACGGTTCCGT TGACGGGATTCATTACTTTGAATGTCCTCAAAGATACGGGGTGTTTGTTCCAGCACACAAGGTCCACAAT CTACCTCCCCCTTCGCCTTCAAGCCCAACATCAACTCTTTCACACAATTCCAGTACTAGTATATGCAGTA GAGATAGCAAAGACTCTAAACCAAGCAGTAGAATACCCACGTTAGGTTTAGCTGGTGGAAAACTCCCAAG ACCAAAGACATTACCTGTGTGCAAAGACTCCATTTCCAAGCTGAAGTCGAATAAGAAAAGCGGTAAGAAC ATTGATTGCGGAAGGAGCGATACTTCTTCAGAGAAGTCCTCAACATCCAGCAAGCTGTTTCAATCCAAGA AAATTAGTCCTGTACATACCAGTATTACCCATTCTGGGTGGACAGGTGAAAATAGAACTAAAGGCAAGAG GACTACAGATACTCAGGTTAACAAACTAAAACCAAATCATAATACTACTTTCACTGTGAGTGACAATAAA CGACAGTATGCGAGGGTGACATCACCGAAGGACAAAGCTTGTAGGAGTAGTAGTACCGAAACTAGTAGCA AGACTCTTCTTCAACGGAAACTTGCGCGCAATAAAAATGTGAATAGTAAACTCAACTCCCGCCCAAGTCT GAATGACTTAACAAGGACGTTTGAAGAAGGAGAAACAGATGAAAATAGACAAGACAAGCCAGACCTTGTT GAAGGTTGTTACTCTAAATTGAACGAGACCTTTGAGTTGGACAAGGAGGTTTCATCATTTTTCCAGGAAT CTTGTTCAGGAAGCCTTGGCTGGGACGACTCGCATTCGCTCAGTCCGCTTGAAGATAGTTCCTCTGGTCG CGAAAAATCAGATTCTAGTTTAGCGTGGGATTTTGAAGTTCCTCAATCATCAACTCCAGTGCAAATCCAT CTCCAAGTAGGTTCAGATATCAGAACTTCTATACCAGAAGAACCTAGGATTTATCCTCTAGGTATCGGAG CTACTGCTCCTGCATTCACCGTGGATAGTCTGTCTAGCGATACTGAAGATGAGGAAGTGGAGTACAATGA ATTTTTGGCAATTCCAACATACTTAGATACGCCAACGGGTCGATACAAATTTGATCTTTTAACACCTGAA GAACTTGAACAAGCTTTGAACGAATATAATCTCTTGCCTGAGGAATTACAGGATGCAATAGACTTTGAGC CTCAATTCTCTGATGTGAAGCCAAGGATTTGGGAACCTATTACAACTGTTGAAGACGAGTTTTTAAGGGA GTCGAGTAACGCCCTTTTCTCAGTTCCCTTGACTGCTGCTATGGATCCAGAGCTCAAGGAGAAATATGAG GGCATTGGAACACCACCAGTGGATAGCGGGGCCACCACACCACTAGGAATAGCTTCAAATGGAATGGAAG TAGATTGCTATCCGCAAGGGGTATTTACTACAGATGTAAATGGTAAACCAAGAGAGTACCCCTCTGTCTT ACCAACACCAACATCTGATGGACATACTGTGTGCATGGAGAAGTATGGGGAGCTTGTGTTATCACAGAGT ACTCTAAGTGATGCCAATGATACAACTCTTGTGGACAACCCTTCTAGTATGGACGATGGTGTAGACCTCT CTGAGGACTTTGAAATGGAGGTAGATCCTCACAATACCACGTATGATGTGGATGTGGACCTTCTGGAGCA GGAGGATGTGGAAACACCCACGTCCTCTTCTTTTGTCGTTCAAAAGTGTGCTGAGAAACGCCAAGAAGGG GATGGTCAAGAGGTCAAGATTGGCATGGTCTTTGAGAGCAACAACAACAGTCAGGTGCCACTGTCCCCTC TGGATCTCCTGGAAGGAACTCATCATTTAAAGACCTGTGATGTACAGGCAGCCATTCCAGAGACTGATAA ATTTGGTGCCGTTGTTGTTTCATCTGGAACCGATGTGGAGGTATCCCAGCATAAGGGAACAACGAGCGGA AGAATAGTGATATCAATGCCTCAAAAGACTTGCTTTCCTGCCACTGCGAGTGAAGTGCAACACAGCAAGT TAGAGCGTATTATGATGGATACTGAGGAGGACCTCAAGTTCAGAATGGATGAGATGGCAGTAGAAGCCAA CATGGCTGACCTGGAGGAGAATAAGAGCGTGGAATCAGAGTGCAGCAGAACAGAGAGCGACAGAGCTACA GATAGAAGGGATACGAAGACACATAGTGGCCAACCTAATGGAGAGTTACAAGCTGTCATGGAGGTTGGTA TGTGTCTCATGTCCCATACTGAATCTGCTCTCACAAATGATGTCAGGAGTGGGATGAAGAGTCCCAGTCA GCACTCTAAAGAAGAGGAGAAGAAAGATGATGAAAAACCAAATGGTGTTGCCAAGAGAAAATCTTTGCTG CTTACTCCGAAGAAGGTCTCCAAGAATATCACTTCGCACTCCAGCCATTTCCAAGTCACGTTAAGTAGAC CAAAGACCGGAGCACCAACGACGTCCAACACGGCCAAACCTCCACCTGCTCAGACCCAAGGTGAGAAGGA CAACAAGAAGAGCTATACGCCATCATCCTGGAGGAACGAGAGTAATGGATCTACTAAGACTGGTGTCATT CCTAGGAGGAGATCTGCAGAGAACCGACAGGCAGGTCGGTTGAACGACAAGAACCACCCAGGGCGATACT CAGCTGATGCTGCTCACCTGGTCCAAAAGCTACAGCCCATCTTGGACATCAAGGAGAGCAGGAGAGCAGA GAGCACCTCATCAATGGAGGTGGATCCTGGAAGCATCACTTCATCTAATCGGAGTATGAGGTCAGAGGTC ACTGCTAGCAGTACAACGTCAAAGTTGAGCTCAAAGAATGCTCAGAATGGCAAACCTAACAAGAAGACAG CATTGTCCTCGAGGAACTCCTCTGAAACCAAGAGACATGAGCGTAAGCCTAGCTCCTCCAGCATGGCGTC GGACCACTCACAGAGAACTGAGTCCAGGAACTCCATCTCCTCTAGACCAAGCTCCAATAGTTCCAGAGAA GCGAGAAATGCTCGACGCAATCGCGCAACAGTCGGTTCCAACTCGTCCGGTAGAAATGTGACCGCCACCA CCACCACCACCAAGCCTGCTACGTCAAGTACCTCTTCACGCAGTCGACAGAGTGGCACCACAACCAGTGA AAGAACTACCAAGTCTGCATCAAAGACTAGTCAAGATACTACTCATGTAGATGCAGCCCCCACAAGAAAG ATTGCTGTTCCATCCAAGAAGTCTTCTGATCATCAAGGCAAGAAGGCATCCACTTCTCAAAAAGATCCCC ATCAAGACAAACATGGCTACAAGCCCAAGACGACAGCCCACACCCTGCATGCATCGCCTCCAGATCTGGT CTACACCTCCCTAGTCAACGGTGAAGCATCGCAGGAGATCAAACGCCTTGAATCGCTATGTGAGACAAGG TTTCTTCAACTCTCCAAAGCCAAAGAACAACTCCAAGAAGCTACTAAAGGTTTCGATGCCATGGCGACCA TTGTCAGCTACCTTTCACATGAGGTTGATGGCTTCTCTGCACCTAATCTCAAAGCTACCAATGAAAAGTT GCAGAACCAGGTCACAATGTCGACAATTAAAACGGCTCAACAAGAAGCAGAGATCTGTCATCTCCAGGAG GAGCTCAACATGGAGACACACACCCATGAGGAGGAGACAAGGAGAACAGAGCTCCTTCACATAGAGGAGA TCGAAAACCTCAATGAAACACTCCGAGCCAAACATAGCAGAGACATCCAATCAATGGCTACTGAACACAC ACAAGAAATCAGGAAACTAGCTGATGGACATCAACAAGAGATGTGTGACATGACAGCGAGTCATCAAAGC CTAGTGCATGACATTGAGGACCAACACGCAGAGCATGTGACTCAGATCAATCAGGATCACATGGATCATA TGGAGGAGGTGATCAGAGGGAAAGACCAGGAGATAGAGGCTCTCAAGAGGGATGCAGAGGAGAGAATCAG AGAACTTCAGGATGAGGTATTCAAGTGGAAATACCAGTGTGACTGTCAGACGACGAGAACACAGGAGCTG GAGGAAGCCTTGAGGAAGGATGATAACGCCAAAGTTCAGGCGGCCATCTCTCAGTACAAGCACCTACCAG ATGAGGTAGCCAGTATGAAAGCTGTCATGGAGATCAAGAATCAAGAGATACATGAACTCAGGATAGCTAA GATGGCTCTACAAAAAGAGCATGATCTGATAGAGAGAAAAGATGAGAAGATTAAAAACTTGACCGCCAAG GTGGAAGACGTCCAGGCACTCATGCAAAGAAAGACAGAATATGAGAGGCATCTTTCAACAGAGCATGTAA CCCTGCGAGCTTCATACGAGCGTGAGAGTAGCGTTAATAAGAGACTATCCATGGAGAACGAGGAGTTGAT GTGGAAATTAAACCAAGGTGATAACTTTTCACCCCCTCCCCAGTTCAAAGCAACCTCTACCCCTTCCCCG TCCCCGTCACCTACTGGCGCACGGAAAGGCTTCTCGCGATCAAGCTCCATGGAGAGCCATGAAAGCGGCG TATTCTCACCCAACCATCCGCATTAATCACGACGATGAAGTACAAGGATGGGCTCGCATGGGTCTAACAG CGCGGTGTAACCATGGACCATCGGCAGCAATTTTTCAATGAAGTACATTGGTCTATACCGATATGGCATA AATGAAGATGTCTTGATTGTATACCCAAATCATCATCATTTGGATGACTGAGGGCTCCCCAATTCAGACC ACTCAACACTTTCCCTCCATCTTGCAATATTCTGAAGAATCAGAGGATAGTATTGTAGATAGGATTATGT CCAAGATTCTACAATGCTTATTGTTAAAGTTATTTGTTGCAATATTTCAGGAGAGGATAAAAATAAGTGA AATAAGAATGCTACAAAGTGGCACATTATAAACAAATATTGATTTGTAAAAAAAAAACATGCATCCAAGC TGTGCAAATATCATTTGAAACAGGGATTGATGCATGTATGGAAGGTTATACAGTAAGCAAAGAATTTCAA GCAAAGAAGATCATGCCAATTTTATCATATGTCGATCATTACAACATCAAACAGTAGGTTATAATCTAAA TTCAAACTCATTGTAATTAATAGTATAGAGTGTTGTACCGGTATCTATGGCAGTAGTAACTGATCTGTTT ATTGGCAAACATTTCATTTCATAAACAGTAATGAAAATACTGGGTCAGAATTTCTGTAAAAATACTTAAT TGTCAGAAGTCTCCTAAAAAAGTATGTTTCTGAAAAGATCTAGTGATACAAGTTGTGTAATGAAATAAAC TTTTCTTGTCAAAGTTAAGAGCTTTAACAGTAATAAACTCAAGAGTGCAAATACCTTTCTGTATTCTCTC AGTTTCCATGATATGACTGTAAGCCAATTGGATGTTGAATATGTGAAGCAAAGTCAACTCAAGGGATATT GAAATAATGAATATCATTTTAAAAAGATGAATAAAAGAGAAAGAGATTACACTGTACTTAAAAACTGATG TAGTAGCCTTTGTTGTAATGATGAAACATCATATAGTATGCTTCTTTTGGAATTGGACATAATCTTTAAT AGCTGAAGGATCTTTGCTACTCTCTTCCATCTCTAGTTCTCACTCATGCCTCATTATTAATTACACATGC CATGGTTTGACATGATTTGTTTAGACTCCAGCTTTGGACATTTTATCATGATATTATTCAGCATGATATC ACACATATATTTCATTTATTTAGTGAAAGAAACCAAATTTTATCCCAATAAGTATCGCCCTTGCATGCTA ATTTTATGTCATCACAAAGATTGCTTTGCCAAATTTTTCTTGTGTTGTTTTGGAGTTTCAATGATTATTT CAAGTATTTACAAAAGTGGAACATGTGCTAAACTTTGTTTTAGGATGGAAATAGTCTTTTTCTTTCTTCG GTGTGCCATTTATATTTCTCTTGGGTGCCAAAGACAAAGATATATTGCCTTTATTTGAAAATCAAATGCT TTTTTTTTGTTTTGGAATGTTAGTAAGTGGTTCTATGATATTTCATTTGTTCATCTTTATGAGGTGAAAG AAATGGTTGCCATGCCAGTTATTAAACCTAGATGTCATTGAAGATCTCTGAATTTCTTAATGTATGTTGT GAGGTGTAGATGTGAGGAAGAGGTCAATAATGAACTCATCACACATTCATAAGTGAAGAGTTCTAGCTGT AGTCCATGGTGTAACAATTGTGTGTTGGTTTTGAAGGGGTTTAATTGATTGTTTTCCATCAGAGTGTGAC CTTTGACCTTTGTATCCTCTCCCACCCTGTATCTCTCTCAAAACAAGATGAATATTTCTGATTGTAAATA AAATGTTTATTTGTGTAATTATAATATTCTATTGATTATTTTCCTTTATTTTTAAATTTTCTATCAAATT TATGCTCTCTGTAATTACCTCATGAAAGATCTGTATATCAAGCTTTGTGTAAATGATGTGTTATTTCATA GTTAAATTATTCCTATCTAGTTTGTAGATCATGGACAATGCACCTTATCAAATCTAAGATCTGGATGACT ACTACTTCTCCTAACAATCAGAATTTTTGTTATATGTAATTGTTGTCATGTCAAGGGTAAGCTATGTACA AACATACGCATCTGAAACCCTTTGATTTTGCTGTTAAAACTGGATAAACTGGATTAATAGTATCATGTTT TATTTGCTGAAACACCTGATCATGGCTGCTCAGCCAGGGGGTAATGGTAGTATTCACTGCTTTGTTTCTT AGGGAAACAGCACTGTACAAATCAACTAATGAACTGTATTTTCATATATCAGCTAAATCAGAGTTAATTT GTGATTTTGACTGATAATACTGAGATACCATAATTTAATTTAAAACAATATGAATACTAATTGTGGAGCA CCATGTTGTGTGTCAACTCTGACAGACATGAGCGCAATGACAAAAACCCACTATTAATGTTTCAGGAATT ACGATCATTGTATATGGTTATGATATATATATATATATATATATATATATATATATATAAATAAATGAAG ACTAATGCTCAGGAGTATCCAAGATAATGGGGAAACAATGAATAAGAAAAAGAAATTTTCATATATTTTT AATGGAGAGTTGTTGCTGCAGATGTCTAGCTTTAGTAGGGTGCATTGTTCATGAACTACATTTTTGTCTA TCTTAGGGAAATTAGGGACCAATCGTGAAGACTGGTTGCTTATCCCTTCTTACTGCTTTAATTGGTGCTA CTCTATCAAGTGTTAGATTGGTGATGGGATTTCATTACATTGTATCTGTAAAATCATACACAGCACACAG CACCACAATCTTCTTCAGTTGTACACTTCAAAATAGTATTCAGGATTGATGATGATGTTTTTTTGTTACC TAGGTTATATCATGATAGTTTCCTTCACATAGATACTCTCTTTCTTTGTGTCTTCATTTCTTCTCATTCT CACCTTCCCATCTCAATTTGTATTTCTTATCTTTTTATATTATCAATAAATTTTATTTAATGTAGAGTTT CATTGCTTCATTTTTTAATAAATTATTGAAAATGTGAATAATCTCATTTTCTCATTTTACCTTATATTTG GTCAGTTCTTGGATAGTGAGTTAATTTTATGATTTATTCATAAAACATAGGAAGCAGAACTTTGAAAATG AGTTATGTGAAATTACTGGAGCAAATAAATGAACATATCAGTACATTTGATTACCATTTATGACTTGTCT GACAATATCTGTAGAGGCATTTTTATATGAATTAATTAATCTGTTCAATTGAACCCCCTAATGCGAGGGT ATGAAGTATAGACTGTAGATATCATAAAGATGTTTGAACTAGATGTGTAGAATATCAGACAAAATGCATT CTCTACATTCCAAACAAATATGGTAGTGATAGTTCATTTTGATAGGAATGTTTTTATTTGATACTAAACT AGGAAACGGCTAACATCGTTTGGACCTTAGACGAAATATCAACCGTATTTATTTCTTTAAGCATATACTC TTTATTCTGTATGTCCCAGTCAGTCATGCCTAGTCATTCCTTATCACTACATTGTAGACATTTACTGTAT TTGTTAATTAAATTTGTTATGTCATGTTATCAGTATAATTAGTAACATAATTAGTCAACACGAAGCTATA ATGGTTTTAGTGATTAATTAATAGAAGCCAGGAACGAAAGAGGCATTTATGAGTCTCTTTACTTTCCTGG ACATTTTTTATCTTTGCAAAAGAAAGAAAATATTGATAATGGACTGTAACTGTCAATACAGATTTTCTTG AATAGTTTTTGAAGTCAAATAGGTTTGCAATGAATTATAACAAGTTAGGAGTAATAGAAAGGCAAGGATA TGAACAAGAAACTATATACACTCTTTCTATTTCCATTTCCAACTCTAGGATTAAGTTTTAGTAAGGAAAA TTCCTTTATAGCAATGAGTAGACGTGTCTGTAAGCTCCCTGTACAAGGCAACAGTTTGTATGTTGCATGA TGCTCGCTCTGTAGGTTGCATCTGTTTTTGTATACAGTTTTGAAGTGTTCTGTCATTGTTTGTTTCTGTA TGCTTTTATCTTTCTCTCATTCGTTTCCCTTTATAGCTCCTTCATTTCTCTACAAAATAATTATCTCATT TCATCATGCTTTTTGTCAGATTTCTCAATTTTTAGCAAATTGATTTCTATCTGTGAGTGTCTTTCATGTT TAATAAAGATATCTAATTTGCGTCTTCTATAAAAGCATTAATGACTTCATGTCACATTGTGCAAATTAAT TGTTCAGCATTTTTTCATCATTGCTTCTTATGTATTATTTTACTTTAACACCATACCAATTTATCATTAA TAACTTTCATAATAGACATTAAATCTGTTTTGATAGAGGAGACTGAAGAAAATGTTTCAATCTGAATGTC ATCAAATAAACATTTTATGTGTTTGAGATTGTACTTGATGTAGATGGAATCAAATTGCTGCAGTCATATT AAAATAATATTAAAGCAATATCAGTGAAATTGAACTACAAATCAGAATATTTGATCACTGTTTTTCTTCT GATAGATGAAATTACAAAGGTTTTAGTGAATACATGGCTTATCAATTCATCTGTGATCATGCTGGTGTAC ATACATGTTATCAAAGCACAGTGACTCTTTTCTTAATAATGACACTTAATGGTGTGTGAAATAAATTTTT AAAGCAGCATTCATTACAAACAGATAAATGAAAGAGAACATGATTTGTGTACTTTCATCTGTTCATCGCA ACTGTCTACTGCAATCTGGTCGTGTGCTCGTCAAAATAAAATGTGTCGCTTTCTCGTGATGTGAAAACTA GAAATTACTTGTAGGAATGTATAGAATAATGTGCACATTTTGAATGTTACCATGGATATTGTTGAAATCC TATTGCTTTCGATCTGGTGTATTTATATATTGTGACTGTACAGTATGAATAATGCCAATATTATAATATT TAAAAACAGATAAAATATTTATTGCAGCTTCTGTGTAATACATGCTTGTCTTGTTAAAAAGGGAAAGAAA TATTTCAAATGAAGCTTGAAGCTTCCTGATATGCGTATCGGACAGAATAATCATGAACACATCTTTTTAT GTAGCTGTAAATTTGTCGTTTACCCTGAATATTTGGTTGTTTTTAAGAGAAAATGGGAAATGTGTATTTC ATGTATATCTTCAAAATATTTGCATGATTTATTTCAGGTGTACAATAAAAGTTTTTGTTTATATCTAAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds