Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT102526.1 TSA: Strongylocentrotus purpuratus WHL22.600831.3 mRNA sequence AAAGGAAATTTAAACGGTGTTCATCATGCTGCGTACCGTATCCGGGTTGTGTGGTATCGTACCTGAAGAT GTTCATACCTGCGATGAGAATTCCATCAACATTTTGGAACGAGGATTAACAGGATATCTTTAGTTTGCTT TAAATCGTTGTGATCTATGGAATTATATAAAAATGGATCGAAATAAAGGACTACGAGGTGCGAGCTACTT GGAGCCCAGAAACAGGATACGGACGAGTAGCAGCGACAGCAGCGGGTCTTCGTGCGGGGACAGTGAAGGG AGCCAGGAGAAGCTCAGGCGATTGTTCCAGACGTGTGATAGCGACGGCGATGGTTTTATCGATGGACAAG ACATATACTTGATGTGCCGTGAGCTGAATATGGAGGACAGCGTGCACGATCTAATGGTACAGCTTGGGGC CGACCGTCATGGCCGAATCTCTTTTGAAGAGTTCTTACGGTGCCAGCAAAAGCTACAGGGCGAGATCAGG TCAGTGACGGAAAGTGCACCCGCCAGACCACCAGACCACCACAGAGGTAGTATGAGCAGTGCTGATGAGA TGTACCAGGACAGACTACAGAGGGCGGGCTCCCCGAAGATGGGCAGTAATTCTAGCCTTCCGCGGAGTGG GCATTTAGGTTCATGGCCAGCTAGCAGTGATAACAGTTTAGGAGCATCGTCTACGGCGAGGGACAGTTGG GAGCGGGATTCCGGAGCTCGTGATCTCACAAGTCCGGAGCCAGGTACCTTCCTTCAGAAGCTGATGGACA GTGCCACCGCAGCTGGGGGAGGGGCCAACTTCCTGGAGCTCGCCAATACTCTCCATTTGGCAGCCCTGTC ATCGTTAAAGGGAGAGATCATCGAACTAAGTAACAGGTTACAGAAAGTGACGTCAGAGAGAGACTCGTTT GAGAAAAGACTCACAAAAGCACAGTTGGAGAGAGCAAGGTACATGCAAGATAATGATGACAGGTTGGACC AACAAGCAGTACGGTATGAGGAGAGGATCACAGAACTACACAGTGTCATTGCGGAACTCAACAAGAAGAT CGACAGAACGCATAGCAATGCGATCCAGGAGGAAGAGGAGTTTTCCCATTCTGCCTCCAGTCCTCCAAGT AACATGAGTAACAGCGGAGGAAGCTGCAATGGAAGCAGTTGCCATGACAGCGATTCGGCAGCCAATATGG ATCCGTGCAATGACCTAGGAGCTGAGCTATCTAGGGTGGTAGGAGAGCTAGAATGTGCAATGGAGGGGCG CAAGGTCGGGGATGTCTTTCGCAAGCACATAGAGTCTGCTGAGCATGAGGTGGAGAAACTCACTGAGGCA TCCGAAGACATCAAACAAAGAACATTACAGGCTGTGCAAGAGGTGGAAAGCCTGGACCTGGACAGCATCG AAGCCCAGTCACCCCAGAGCCATCGGACCACGCCCAACGGTCACTTCAGCGGTCACCACCAGCTCCACCT GGAGACCAGGAGACGGAGCTCCTTGGAGCAGGAGGTGACTCTTCTCCGGGATGAGAACGAGACGCTCAAC TCATCACTCAGCATGAAAGAGGAAGAGATGCACAAGCTCAAGGCTAGCTTCATGGGTATCAGGGATGAGA GAGATAAACTCAGGAAAAAGGTGAGAGAGCTTCAGAGCATCCTCCACGCCAACAACCAGAAACTGGGTGG CTACACCTCTTCATCCTCTGCCGAACAACTCAACTCACCCAACCCCCGACACTCGCCCCGTCACTCCCCC GGTCCTTCCCCCTCTCAGTCCGCCCAGAATGTCAACCCCAGCACTGGAGAGCTTAGTCTGACCGGTAGTG ACCGCAGGACGGACATCCCAGTGGCCAAAGTGGCCGAGAGGGTCAGGTTAAAGCAATCAAGATCAGCCAG TAGCAGTAGCAGGAGTAGCAGTGACCGCTGTGTCCTGGGCTCGGACATCAGCAGTATAGGGATCACGAAT CCCAAGGTAGCTGAGCACCTAGCCCAGACACTACAATCCTGCTCCAGTATGCAAGAGATCCTCCAGACCC TCTCATCCTACGGTCTTTCCATCCCAGAGCACAAGGCCCGCGAGATCGAGGTCGACCTGGAGAGACTTAC CAGTAAAATTGAACACTTGAGGTGCCAGAACGATGTCCTGCAACTCTCGCTGGAAGAGAGCAAGTCTAAC GCTGACCGGCTGACCATGTTGGTGGGCAAGTACGAGTCGAACAACACGGCTTTGCAGCTGGCGGTCAACT ACAGCGAGCAGACCATTGAGGCCCAGGAGGTTGTGCTGGCATTGAAGGAGAGTGAACAGTCGGTGCTTCT GGCCAACTGCAAGGCCGCAGGAGTTGGACTAGAGAGCTCAGAAGGATCAGGAGAAGACTCAGAGGAGACG TCCTCGATGCTCAAACGTGTCCATGACAACCGGAAAGTATCAGAGAATGTTGCCAAGGCCTTGTTGCAGA GGTTAGACAGAAGCTGTGGTACGATGGTATGCCACGTACCACTACAACCCTGGGAGGATCTCTCATCACA TAGTCATACAAGCACCACAAGTTCAACGGCGAGCAGCTGCGACACAGAGTTCTCCAGAGAGGACGAGCAG CGCCTCCGTGACTACATCCAGCAGCTGAAGAACGACCGGGCAGCAGTCAGGCTGACCGTGATGGAGCTAG AATCCGTCTATGTGGATCCTCTCAGCCAGGAGTCTACTCCCAGCGGTGACAGTCAGAGGCTGGACCTGGA GAATGCAGTGCTCATGCAGGAGCTTACAGCACTCAAGGAGGAGAAGGCGGAGCTAAAAGCACAGTACTAC CTCCTGGACAAGGAGAAGAAGACCCTGGAGCTCAAGCTCAGCTCCAGGGAGGCCCAGGAGCAGGCATACA GGGTCCAGATAGATCATCTTAAATCAGAGGTCAAAGACTCCCTGAGCTCACCGTGGGAGGAGCAGCCATC GTCGCTAGGGAGGCATAGGATAGACGTCATGATGAGAAATGGAAAGGTGGAGATGGACCACCACTCAAGG CAGGGCTCGACCAGCAGCAGCGGTGGAGGACCAGGAGGCTGCGGGGGCGGGGGAGGAGGCTCCGGAGGCA CCACCCCTGCCATCACTCTGGCTGAACTGAGCATGCTGGAGGACCCCTCCCTCCAGGTCAACGCTGCTGA GATGCTACGTAGGGAGAAACGTCTCAAGGCTCGCATCCAGGAACTGGTCTTGACCCTGGAGAAACTTCAG AAGAACTCTGAGATGAGACACCAACAGTCTGCAGAGTTTGTGGCTGATCTAAAGAGGGCTAATAGTGCTT TGGTGACAGCGTATGAGAAAGCCAAGAAGAAGCACCAGAGTAGGCTCAAGAAGTTAGAAGCACAGATGAT GGCCATGGTTGAAAGACACGATACACAGGTGCGAATGTTGAAGCAGAGGATCGCACTATTAGAGGAGGAG AATCATGCTTCCAGACCGCCGCATAATGAGACGTCGTTATGAGAAACTCCGACCCTGCCCGTGACCCTAA TCAGACCCGTGAGATACCATGGCAGTCTGTGTGGAGCATTCAGCGGAAATAGACTCTTAAATGTAAACCA GTATGGAGTTTGAGGAGAGAAATCATAGGAATTATGACCAAGCCTGGAGAAAACTTTTATGTGAGCCGCG GATTTTTCATTTCAGCGTATTAAGTGGAGCCGTCCCCGAGTTGGAGAGATGCATAAAGAATGGCTGTCAA AAGATGCTTGCTGGCAGACTCTTCATGCATTCAGACATGATGATGATGAACTTTATATTGTTAATGTGGC TTATGATTAAACCTTCTTTGAATCACTATTTATTTCATGCAATTTTGTTTCGTATGTAAAAAGAGAAATT ATGTAAGAGCTGTATTACAACAAAGATTATGTTTTCACTTTGATTTTATACAGTAAACTGTTCCCAATCT TCCTCCAACCAATTCATTCTCTCAGTCATGCTTTTAGTTAGAAGAAACTAAAAGTATAATGACACTGGAA TTATATTCAGATGAAAAATGGACAAAGGAAGGCAGCATCCTCTTTTAAACCACAGAATCATACCTTCTTT TTTTTGCTGGATAATTTCCAGCCTTCTTTTCCATTAATTTAGAATAGGGGAAGATTTATGTTAATGATAA GGAAAATATCTTATCCCTTATAATCACCTTTTTTGTTTGTTTGGGGAGGGGGGGGCAGACATTTATTGAT CTAGCTTGGTAGAATATGTGTGACAATGTTTACTGTTTAAGAAGTCATTTGATTGCATTACATAACAATG TAAAGTACTGAATGCTAATTTTAAAGTAAAGAAATGTACATGATGCCTTATGGCCTTGCCTTTTAATTTT TTTTTTTTTTAAAGTACAGGCATTTGTGAACAAGCTCATTTAATCAGATATATGTGAAAGTCATGTTGAA ATTGTCTTTATTTTAATTTTTTATTTAAAATGTGTGATTTTCATAATCTGGAATAACTCAGTTTTCAGTT TTTGAAAAGATATGAGATAAATAGTCCTATACAGTTTTGCTCATTCTATTCTTTCATTTTTCACCTCTCT ACTTTGCTTTCTTACTCTTCATCTTATTTCCCTTTCTATTGGCCATTTTGCTTGGATTGTACGATCCAAG ATGTGCTGCCAGTAGATATTGATCACTTTCTTTAAAAACTATTTATTACGTTTACTGATACTCCTGTATC TTGCTTTGATCTTGCCCTTTTCCCTTTTGTTTCAACAAATGGAAACATTTAATTTTGATCCCTCGTAATA ATGACTGTTAATTTGTGAGAGGGGGATTCTTCTTTAAGTTGTACTGATTTTTAGTAAGACCATAGTTGTA TAAGTAAACCTGTTAGTTAAACTTCCTGTTTCTTCCACAGCTGCAGGCGTCAGAAATTGTAGAACAAAAA TTCATGCACTTCTTTTGTTATGACCCTATCTATTTCATAATCCATCAAGTCAAGAATGGTTTGGAGGCTC CCAAATATGACAAATAAAATTGTTACAATGCTGATTAGACTTACATGTAGATGGTCTTTACTTAGTGACA TCCAATTTTCCTCACATCTTCCTTCTCTTTTTGTTACTATGATAACAAGTGTCCATAACATTGAAGTCTT CCTGAGCATTTTATTCAAATGTCACAGTTTCATTACTTTGCTTTTGATTTATGTCGATTATTCAAAAATG TTTCCTTTATGGTTTGACTTTTGCATTTTATGTATTATCATTTTATGTATTTTCATTTCTCAAATGTCAC CTTGATTTTAAGCAAATTAATTCAAATCTTGCAAGTCCCATGAAATTGTTTTTTTTCAGCCAGTGAGGTG TGGGAGGTATTAATCTAAAGATGATGTTACTTTTGTACACTTAGCTAAAACAGAATTAATCATGGCAATC TAGTATCATTTTATTATTTTTGTATACATTTACTGAAAAGACAAACAATATTCCAATGCTGTTTTTGACT TAGTAGAACAATGTGCTGGAATGTAATTGCGAGTTGTATATTTACCATAATCATCAAAACCAACATCGTT TGTAAAGTAGTACATTCATTTGATGTACAGTGGTGTTGGGGAACGCATTAGGGGCACCAGCCCCCCCCCC CCCCAACAACAAAAATTTTCACCAAACTTGCAAAAGGAAAGAGAAAGAGAGAGAGAGAGAGATGAGATGG AAAAGGAGTAAGACGACTAGATTGGTCACTTAACTTGGTCTTATTTCATCTACCTATTAAAACCAGCGTC CCCACAATGACTGGACTTCGACAAGGCTTCATATAAGGGCTCCACATTTTAGGGAAGGGTTTCTAAACAT TTCAGAATTTGGAGGGTCCATACTTAGATTTGGGCGCCCAAGTGTTCTTGGCGCATGTTATTGTTGAGCC CTTGTTCATGACTTAATGTAATCTGTAGTAATAAAGTTTATCATTTTTAAATTTTCTCTCCATTTGCATT ATTCATATTCTGTATTTTTGATTTCTTTTTAATCAAACCACGACACTTTACAACCTTTATGTATTGTTTG AACATTTCATTATGCACAATTTGCCTTTTTGTGTTCTTTTCCATGTGCCAAGAAGCATTTCATTTTCTTT CTTTCTTTTAACAAACCCATTTATTGCTCTTCCAACACTTTGTAATATTATCATATTTTGTAACACTTGG TAATATTATCATACTTTGTAAAAGTTGGTTTAAAATTTGTTTAGGAGAGAAATGTTGGGAAAGGTCTATG TTCAGTTAAAATGTTCATGTTAAGGAAAATACTGTTTGAATTGTTTTCATTTAGAAGTGCAAGGGGTAGA AAACACTTTGAAGTTGATTTTTACTCTCTCTCGTAAACACACATTTGTAGACTGTTATGTCATGGTTCAG TCTCATTGTTAATTTTAAATGTCTTTCATTGTTCCATTTTTAGAGACCATAACCGACTCAAAGCAAAGTT CTTATGTCATTGTTTGTGATTGCATGGTAATTTATTGTAATTGAAAGCTATCTGCTTTGAACAAACTAGT TTACTATAAGAGCAGAAATATGTAATTATAAACCCTAAATTAAGTATGTAATTGTTTATGTGTAAATATA TACATAGCTAATCAACATAAAAATTATATATATATATTGTTATCCTGCATGTTTTATGTAGGTATCTTGT TTTGTTTGTTGTTTGTTTGCATGACTGTTAAAATACATAAATAACTATTATCAGTGGCAAAACTTCAATG TATGCAAAACAGACAATGATGAAAGAAAATAAAAGAGAAAATTATTTTATACTCATATCTAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds