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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030981748.1 PREDICTED: Strongylocentrotus purpuratus multidrug resistance-associated protein 5 (LOC578391), transcript variant X1, mRNA TTATTTCTTCATCGCATTACCAGTTCTTCTTTTGATATTGACGTTTCTTCAGGCTCATTACAAGATGGAA GAGAACGTGTAAACAGACTGTATACCTAGTTAGAATTACGAGCCATAAACACAAGTGGACTTCAAGTGGA ACTTTTAAAAAAGAAGCTTCGATCTACCAACACAGACATTTGGTACACTTAAATTTTCTGACTGGTCCTT TCTGTTAGCTGTTTAAAAGGGCAGTCGCCCTCATCATCAAGATGCCCACCACGTCGAACGGCAAGTCCTC GGGCGTCGGGGGTTTCATCTCGGCCCTGCCTGCGGACCTGATCGACAATGCTGCCCTCGCGGAGATTGAC GTGGACGAAGGGGTGGAGCTCGTTCCGGAGGTAACGTACCGTGACCTGAAGGAAAAGAAGAAGGGCGTCG CCAAGTACAAGGACCCGCTGAAGGTGTTTTATCCGGTCAGGAGAAAGCCAAAAGAAGAGAACTATTCCCC CCTCGACCATTATGGACTGTTCTCCTTCCTGACGGTCAACTGGTTGACGAAACTTTTTGTGAAAGCAGTG AAGAATAATATTGAATTTGACGATCTCTACGATCAATCGGAACTGGACTCTGGATACCTGAATGGACTGA GGTTTGAGAAGATGTGGGACGAGGAGGTTGCTAAGGTCGGTCAAGAGAAGGTCAGCATGGGTAAAATAGC CCTGAAGTTTGTCCGGACTCGTCTCGTCATCATCATCACTGCTCTTATTGGATACGCCGGTTGTCTCATT GTCATTTCTTCTTTCCTCGTTCAAGAGCTGCTCATATTCTGCGACGAAGTGGAGGCTCCCATGTCCCGCG GCTACATCCTGGTCTGTAGTATCCTGGCGGTCAACATCATCCGTGTCATGTGTGACGTGGTATTCTGGAT GACCTCCATGCGGACGGCCACCAGGCTCAGGAGTGGTATCCTGTCCTTTGTCTTCAAGAAGATAGCCAGG CTGAGGAACCTGCAGGATAGGAGTGTAGGAGAGATCGTCAACATCTGCGCTAACGACAGCCAGCGTCTCT TTGACGTCTGCGTCTACGGTAATTTCCTCTTCGTCTCCATCGTCCTCATCCTCGCCGTGCTGGTATCAGC GTCCCTGATCATCGGTTGGGCTGCTATCTGTGGTGTCCTCCTAACCTTCATCTTCTTCTGGCCTCTTCAG ATGATCTTTGGTAAGATCACATCAATCCTCCGTGATCGCTGTATCTCGGTGACTGATGAACGCGTCCAGA AGATGAACGAAGTACTGACCTACGTGAAGCTCATCAAGATGTACGCCTGGGAGGTACCCTTCTCAAAAGC AATTTCAGCTATCAGGAACTTGGAGCGGTCTCTGCTGGAGAAGGCTGGTTACATGCAGAGCTTCAGTCTC TCCATCTCCCCCATCACACCTAACATTGCAACCGTTCTCACCATCGTCATCTTCCTCTCTTCAGACTACG ATGAACCACTCACATCCACAAATGCTTTCACCTTAGTGGCCATTCTAAATACCCTCAGGGCTGTGATCGG TCCCACCCCTTGGGCCATCCGATCACTCGCAGAGGCAAACATTGCCCTCGGTAGGCTAAAGAGTGTCTTT GTGATGGACGAGCAGAACCCTCTAGACATCCTCCCAAGGAACGATAAGTACGCCGTCATCATCCGAAACG GAGTGTTCGGTTGGGATAGGCTGGAGAGCGGAGAGCAGGAAGAGGAGGAAGAGGAGGAGATCAAACTGAA GAGTAGAGCCATTGAGAACGGCGCCAACAACAACGAAAGGAAGGTGGCGTACGTCCATACAAGGGAGGTC AACCTGCAGGTTGACCTTGACGAGGAAGCGCCCTCCAAGAAGTCTGCCATCACCATCATCGAGCCAGAGA AACCACATGGCAATGCGGATGCGGGTAAGAAGGCCAACGAACAAGGCAAGAGATTCAGCATCGCTACCAA GCCAGTCTCCCTGGCCGAGGCCGGCCTGGATACGGTTGCCGTCGATAAACTCATCCAGAAGAGCAAAGTT CATCCAAGACGCCAAATTCCTGACGACAAGGTCTCTAAGGTGCTCTTCGGGATCAACTTTGCTCTGGAAA AGGGTAAACTGACCGGCGTCTGCGGTACCGTCGGAGCGGGCAAGACCTCCCTCATCTCGGCCATCCTCGG ACAGATGCACAACATGGAGGGCGACAACTGCGTCCAGGGCGCATTCGCCTACGCCGCCCAGGAGGCCTGG ATCTTCAACGCCACGGTCAAGAACAATATTCTCTTTGGAATCCCGTTTGACGAGGACAGATACGATATGG TCTTGGACGCTTGCTCCCTCAAACCCGATCTGGCTATTCTACCAATGGGAGATCAAACCGAGATTGGAGA ACGTGGTATCAACATGAGCGGAGGACAGAAGCAACGTATCAGTCTGGCGAGGGCGCTATACTCAGACCGT GACATCTATCTCCTTGACGACCCTCTCAGTGCCGTGGACGCCCATGTTGGTCTTCATATCTTCACACATT GCATCAGCACTGCCCTCAAGGGAAAGACTGTACTCTTTGTTACTCATCAACTTCAATACTTGAAGGACTG TGACCTCGTCATGACAATGATGGACGGCCGCATCGTCGAGCGCGGTCACCACGACGAGCTCATGTCCGTG GACGGCGTCTACGCAAACCTGATCAACACCTTCCACTCCAAGCAGGAGGCGGCGGACCTGGAAGACCTTG AGAACCCCGAGGCCGATGAGGACATGCCGGAGCAGGAGGAATCGATGGTGGAGAGACGAGAGAGGGCGCA ATCCCAGCTTAGCTCTCGGTCCAGGGCGTCCAGCTTCATCGCGGACGCGGCTCCGGATCCAGAACCAGCT GTAGCAGTCACTGATGGTAAACTGATGTCTTCGGAGGATAAGAGCACAAAATCTGTTGGCTGGGGCACCT ACGGCACCTACATCAAATCGATGGGCGGCTATCACATGGGATTCCTCGTACTCTTCTGTTTTATCCTCAT GTTTGGCTCCATTACACTCAACAACATGTACCTCACTTACTGGCTTAACCAAGGAAACGGGACTGACCCT GACGGTGACATTGGTTTGAATCCTGACGCTCAGAAATATCAGTTGATCTACGGCCTCTCTCTCATTGTTA TCATGATGTTCGGAGCATTCAAGAGTCTTGTCTTTATGAAGGTAACGCTGAAAGCTGCCTCTCACATGCA CGACACTGTCTTCATCAACGTCTTCCGCTCACCGATGAGTTTCTTCGATACCACGCCCACTGGTCGTATT CTCAACAGATTCTCCAAAGATTTGGACGAAGTTGATGTGCTGTTGCCTTTCAACCTTGAACTCTTCCTCC AAAACATCTTCCTCGTCTCCTTCGCCCTCATCGTGATCTGCATCATCTTCCCCATCTTCATCGCAATCAT CATCCCGACCTTCATCATCTTCATCATCATCCTGCGCTACTACCGCAAGGGCATCCGCGATCTCAAGCGG ATCGAGAACATCACCCGCTCGCCGTGGTTCTCGCACATCTCCGCCACCGTCCAAGGCCTCTCCACGATCC ATGCCTACAACAAGACGGACGACTTCATCGTCAGGTTCCGCATGCTGCTCGACGGGAACGCCCTGCCGTA CATGTTCTTCAGGATGTCTGCTCGGTGGGCTGGCGTGAGGCTGGAGACTCTTGTCATCCTTCTCGCTTTC GTTGCTCATCTCCTTGTGGTCTTGTACCACGGTGAGATCGATTCTGCAACGGCAGGTCTTGCTGTGTCAT ACACCGTTCAGTTGACGGGTATGTTCCAGATGTTGGTTCTCATGGCCTCAGAAACAGAAGCTCGCTTCAC ATCAGTAGAAAGAATCCAGAGCTACATGAAGAATCTTGTTGCAGAGGCACCCAGGGTAATCAAGAACAAA CGCCCGGCCAAGCAATGGCCAGATCAGGGTCAGATAGAGTTCAGAGACTTCAAGATGCGCTACAGGGATG GGCTCCCTCTTGTGTTGAAGGGCGTCAAGCTCGTCGTCAAACCCAATGAGAAGGTTGGCATCGTGGGCAG GACAGGATCAGGTAAATCGACCCTTGGAGTTGCCTTGTTCCGATTGGTAGAGGGCGCCAGTGGGCAGATC ATCATTGACGGAATCGACGTAAAGCAGATCGGTCTTCATGATCTTCGTTCTAAGCTCTCCATCATCCCTC AAGATCCTGTTCTCTTCATCGGAACTGTCAGGTATAATTTGGATCCTTTCAATGAACACGGTGACAAGGA GCTCTGGGAGGCCCTGGAGAGATCCTACATGAAGGACAGGATCAGTGCGCTCGAGAGTCAGTTAGAAGCT CCGGTTACAGAAGGTGGCGATAACTTCTCAGTAGGAGAGAGGCAGCTCATGTGTATGGCGAGGGCTTTGC TGAGAGGCAGCAAGATCTTGATGTTGGATGAGGCTACAGCAGCCATTGATACAGAGACAGACTCCTTGAT CCAGCAGACAATTAGAGAAGAATTCAAAGACTGTACCATGCTCACGGTTGCACACAGACTTAACACCATC CTTGATTCAGATAAAGTACTGGTTATGGACGATGGAATGGTTGCGGAGTTTGATAAGCCAAGCACTCTCC TCGCCAATCCCAACTCTCTATTCAGTGGTATGGTGGCAGCAGCTGAATCAGCCCAGAATCGTTAAACACT ACCCTTTGACCTCCCTCAACAAGGTCATCCTGTGTCACATACTTTATATGACCTCAACAAGGTCATCTTT TCATATGTACTTTAATATGGACTGGTATTCATTACTAGTGATGTATGTTGAAGATCACTGCATGCAGCTC TTCATATGAAGTTATTTTTGTAATATAAGATCGTCCAAAGTTTCTTCTGAATTTTTCAAACTAGCCAAGT TGATTTGGACTTGAATCCCATAGAATGTGTAAGTATGCTATGCTAAGGTTGGATAAACAAAAGCTGTATG GATTGATAATGCAAGATGTTAATTTTGCTATTTTAATTTTTGTTTACAATTGATTTTACCAGTAGCTGCT ATGTAAAATGAATAAAATAATGGTATAGTTTCAACATGTATGAAATTCTTGTTAAATATCTGCAGCGATT GATGGTAAACTTCATTTGAAAATAAATGGGGCCAAACATACAGACAGTATAACGATGAGAAAGCTCAAAT AAACATGTTTTTCTTGTTTTCTTGTTTGCTTTTAGAAGACCACCACTATTGGTGAAAAAAATGTGCTATC CTGTATAAAAGTCAGAAATAAATAAATGCCAACTAGTAATCAGGTATGTACTCTGGTACATTCTTCAACA CTTGATGTGATCTGTTATATATAGCTTCTAAGGAGCTGCTGTTTGGTCGATTACTGCAACAAGTAACAAA GTTAGGACCATTTTATATTATCAAGGATGTATTTCTGCTTCAATTTGATCATTGACACAAGTTTTGCCTT TGAACACATAAACGAGGTGCAAATTCCGAAATACACAGAGCTGAATTGTAGCTCATGTTTTTAATGAATG CCAATATAAGACACTCTAGAAAATAGTCTCATTTGGTTTTTGGTATATTCCCAATGACAAGTTTTCGTTT CAGTTGTATTTTCTTTTTCTTTTAATGGATTCCTTTTTGTCTACAAAAAATGCAGTGTTTTCTTTGTAAT TGTTCAGCAATCAGAGAAGTTCTGATGTGTATTAACCATGATAAATCTATGGGAACCACCCATAGAATAT GAGGTAAACTTTCAAATGCCTACAAATGCAGAATTAGGGATAAAAAATGATAATATAAAGTATTATCAAG CAGTATATATGCTTTGAAGAATTGTGTTTGCGCTCTAATTCTTTTAAATATCAACAGATGTTCTGTATAT TTTTGCATACTACAAGAGAGAATAGAAGTATATTTTGAAACATGTGATGTGTGATGGCAGTGTTGCCTTA ATATTTCTATATTTGTATCTTTTGAAATCAGTGGGATTCACAGATAAACTGCCAATTTTGCTGTTACTAT CATTACAGACTGGGCTTTTGTCTTCTGCCCAAAATGAGATATTTGCATCATCTCAGCGTGAGATTTATTC AAATTACGATGCTCTCATTTTCTTCTCCTTCCTATCTTAGTTATTCTTTGAGCGGTATTCAAGTACTTCA TTATTCCTTGAACGAAAAATGATAGTATTTATACATTCTTAAATTAGTAAAAGCTTTTGTATGATACAAT TAACTTCCAGGGAATTGATAAATTAATTAAGAATAATGAAATGCCAAAGTTATATTTGAACTCTCAAGAA AGTACGCAATATTTATATTGTTCTTATTTCAATGACTATGTATACTTCAACGAGAAGCTAATGATGTACT GTACGATTGTGTGTTCAATTGTTTGTATATATTGTAACAGAGAAAGAGAAGTTATGGAATTGGTATATTC TTTTTATTTGATTGTATAAGAAGATATGAATGTAAAGTTGAATGGTGCTGTCTCCAGATATACGTGTATG AGATAATAAATTATGAGAACAAGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
