Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999763.1 PREDICTED: Strongylocentrotus purpuratus metastasis-associated protein MTA3 (LOC589211), transcript variant X3, mRNA AACCTGGCTAGGCTCGAAGTCGACGAGGACGGAAATCGGACGTGGGGGTGAGCGTAACGCGTCTGCGGCT TCCGCTCGAAAAGAGCTCTTAATTTTCAACATTTTTGCTTGAAAATATCACATCTGGCTACTTTTCAGAA TGGCGGCTAACATGTATAGAGTTGGTGACTATGTCTACTTTGAGACATCATCGTCCCAACCATACCTCAT TAGAAGGATTGAAGAACTCAATAAGACTGCCAGTGGAAATGTAGAGGCGAAGGTGGTATGTTTCTACCGC CGCAGAGACATTCCTAACTCGCTCATCCAGCTTGCAGATAAACATGCAATGGCCCTTGAGGAGGAGCAGG AGGAGGCACTGGAGGAGTTAAACGAGAAGCAACGTCATCAGCTGAAGCATCGTGAACTCTTCCTATCTCG TCAGCTAGAGACCCTTCCGGCTACACACATCAGAGGCAAATGCACAGTCACATTGCTCAATGAGACTGAA AGCCTTCTCTCCTACTTGTCCAAAGATGATGCCTTCTTTTACTCACTGGTGTATGACCCTCAACAAAAGA CCCTGCTTGCAGATAAAGGAGAAATCAGAGTTGGTTCTCGCTACCAAGCTGATGTCACACCACTCCTCAA AGAAGAAGAGACAGATGGACGTGATCTTGCAAACCTTGAGGCTCTTACATGGAACCCAGAACACTGTATG AATGACAGAAGCATTGACCAGTTCCTGGTGCTTGCAAGGTCTGTTGGAACCTTTGGACGTGCCCTTGACT GCAGTAGTTCCATCCGTCAGCCCAGTCTTCACATGAGTGCTGCTGCAGCATCAAGAGATATCACACTGTT CCATGCTATGGATGTGCTTCATCAGCAGACCTATGAACTGGCCAAGGCTATGGCCATCTTGGTACCGGCC GGTGGACCGGTCATCTGTAGAGACCAGCTGGAGGAATGGTCAGCTTCTGAAGCTAATCTCTTTGAAGAAG CTCTAGAGAAATACGGCAAGGACTTCAATGATATTAGACAAGACTTTTTGCCATGGAAATCTCTCAAAAG CATAGTGGAATATTACTACATGTGGAAGACCACAGATAGATACGTACAGCAGAAACGTCTCAAGGCAGCA GAGGCTGAAAGCAAACTTAAACAAGTCTACATACCTACTTACAACAAGCCGAACCCGAATCAGATCAACG TAGCTACAAACCTGGGCAACCGTCCCAGTCCACTCATTGCAGGGGGCAACCCTTTAGGACAGGGTCCACC ACCGGTTCAGCCATGCGCAAGGGCTTGTGAGAGCTGCCATGCAAGCAACTCATTTCAATGGTATTCCTGG GGACCAGCCAACATGCAGTGCAGGCTCTGTGCTACTTGCTGGGTGTACTGGAAGAAATGTGGTGGACTTA AGATGCCCACTAGACTGGATGGGGAACGTCCTGGTAACCTTAGGAACCGTACAGAACGCCCTCCCATGCC CTTGTCTGGGATGCATCGGCCTTTCTGCTGTACCATTAGCGGCTGTGGCAAGTTCAAATTGAAGGCACAC CTAGCGCGCCATTGTCAGACGGTGCACGGCCTGACCATACGTACCAGTAACCCTCGGGCCCTGTCCCTCA AGACAAGGCAGGCATTCATGCTGGTCACTACCCCACTCACACGCCTCTCTCGTTTCCTCTGTAAGAACAT GCTCAATCTACCTCACGTGGCCAGGTGTCCCTTTGACCCCATCAACGTGGCTACAGTCAAACAGGAATGC CAGAATCAGCTAACCCCAGGTGTGATCCCCACCATGCCTAAGCTGAAGCCAAAGACCTGGCCTAGGGTGG ATGTTGTCATGGCTAACCTGGATCAGGACCGGCCAAAGAAACCAGTCCCTCAGCGACCAACACCAAACGG TAATGTACGCCCTCAGCCCACCAACCCTATTGGCACGCTATCTAACATCAGAAAACGGCAGCTTGATGAC AGTGGAGGTAGAGAAGAAAAGAAACGAAAAGAAGGCCCACAGACAAAGCGTACAACCATATCAGCACCTC GTCAATATAGAAGAACTGAATATGATGAAGATGGAAAGCTGAGAGAAGTGGGTCAGGGGGATCCTCTATC TCGGAGGAAGCGTCCGATTAGTTGGCTTGATGCTCCTGACGATGTCTTCTTCCATGCAGACAGTAATACC AGCAGAAAGCTTAGGAAACAGCTTAGTGTGCAGGCGCAGCGTCGCCTGGCCCGCCGTCCCTGGACCATGG CTGTTAGACCACTCAACCCAGGAGTCGTCCCATCACAGCCAGTTGGATCCCCATCCACGGTCAAACCTCC TGCGGATCCCATCGTCATTGATGACGACTAGACTATCCGCCTGGTTAACAACAAGCACACTATCGCCTGG CCTTCCATCCCTGGACCATGGCTGTTAGACCCTCAAACCCTGGAGTCGTCCCACCACAGCCGGTTGCATC CCCATCCCCAGTCAAACCTTCTGCAGATCCCATTGTCATTGATGACGTCTAGACTATCCACCTGGTTAAC AGTAATACCTCAGCGCACTGGCGAACAGACTCTACACTGACTGATGCTTGCTCATCCAGGGGTAGTGTTA TTTTTTGTTTGGTCTGTTAGGTCTGGGGTTGGTGTCATTTGTGTGACTGGGGTTTAAGGAATGGTAATAT TTCTCTTTAAAGTAGGCCACTTCTAATACTAGTTTGTCACTGAACATGTAGAACAGACACAGTGGAATCC TGTTACAGCATATTACTCATAGAGACCCAGAAAATTACCTTGTTTGCTGAAACCTCATTTTATCAGGGCA AAATTACCTGTTTGTAATGAATATCAAGTATAACCAAGTTCTACTGTATATTATAGTAGTTGTATGGTAA GCATTAGGAAGATTTTCAAGATTAAAATGGCAATATGCTGTAGCTGGCTCTAAAGGGTTGCCTGTTATCT TGATCAATTAAACTAATTAATTGATCCTAAATTTGGGAGACATTTAGAGGATAATATATGAATAATATGG ACCTTTTGTCAGATTAGCCTTGTGCTAAACAAGTAGTCTAATTAATGACTTATATGTGCAGAAAATTATG AAGGTGAGCTGTTTTAATGTACATTGTAATGTTGTTAATATAGCTTTTAGAAACCGTTCAGAGAAATCTT GCTAGGGCCTCTTTAAAAAAAAAAAGGTTCTGTTTAATAATCATTCAGTGAAAATACACAGATAACACAA ATCAGAATTAAAGTATTGCAATTAATAGTACTTTACATCACAAATATAATTGAAACATAGAATTTCTCTT TAAAGATGTTTTGAAATGATCAAACACTGAGTAAACTTATTGAAGGTGTAACAAAAATTGGCTCTAGGAA ATCCAATGACATAATTTTGTAAGTGTGTTTGTATATACGTTATTATGTATAGTGTGTTATGTGATTTTGA GATGCAACTGGAGCCAAATTGTGCTGATTCTTTTTTGGGGGTTAACTTTTTTATTTATTTCTTTTTCTAG TGACTTTCATTTTTATTTTGTAGCAATACCATCTTGTATTGATAATCTTGTATTATAGTTGTTTTGATAC ATGTTCACTTGTGATAAAATATAATTATTTGATTTCGGAAAATATCCATTGATATGAATGAAAGATGATT TTTTTCTTCTTCATCAATATGGAATGTATAGAATTTTTAAATGAGTTTCAAATGATGTTTATCTCAATAA GATTTGTTTCAAAATGATGACTAAATATAATATATATAAAAAAACAATGATTCGGAGGAAACCCAAAACA ACGAAATCAAATTCTTCTTAGTTTGCTTAACAAAATTTAGCAAGTATTTATTCACTGAAAATCTGAAAGG GTTACTTACTGGTAAACAAAAAGCCACAAATAAAATGAGCAACTATGTATTTAGTGGCAATACATCAAAT ATTCATGTGCCAAAATATTGATTATTTTTGCCCCAATGATTTCATTTGCTGATGGTCACATTGATGTACA GTGTACTTTTTGCATAATAATTAATTTTTTGCTATTGTTTGTTCATGTTGAAAATTCATTTTAGGTGGAT AGGTGAACTCAAAATAGATCATTGCAGTTGTCCATGTAATGCTTTTGAAAATGCCAACCCTTTGATGTCC AAGATGAGAACGAATTAGTCAAAAAATGTAATCATTTCTTTTCTCACGAGGGGCTTTTTTATTTTATAAA ACCGTCTGGTATGTGTTTTCATCCTAAACATTGTCAGGATCTAATAATGAATCAGCATATGTAAATAAAC ATCTCTTCTTTTTGTATCCAAGATGTGAATGTTTCTCTGTTAATTTGTAAATATTAATTTTTCTAGTGAT TGGAAAGTATTACCATGTAGCTATGTATTTAGAAAACGAGCCAATAGTGTTTTGTATATTTGATTTTTCG GGGAAAGAAAATAAGCTTTGTAAAACATGAATGCATGTGGAAAAAAAAACTATGGAGAATTGTAATCTGG TATTTCTAGAAACATTTTGTGTTGATAAGAATTGTGTATTTTATTATGAGGTCATTTTTGTGAATTTGTG TCTTTTTATACACTCTTCACGTGACAAAATATTTAAAAGGAAACTCCATACAAGCGACAATTGATAGCAT CACTCTGAATTAACAAATCCTTTCTGTGTTGATAACATTGTAAAGGATGCTATGTGACTGTCATCCCTAG TATGATCTTGAATAAACCGGTTCTTGTAACATGTACATGACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds