Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT117225.1 TSA: Strongylocentrotus purpuratus WHL22.59742.2 mRNA sequence TGCGAGCATAACAATAGTGGTATGTGGCGTCCTTTACTAGGGTGATTTGACTCACGCACCACCCCCATGC AATGATATTGTGAGGGACTGTAAGCTCTCCAACTCCCACGGCTGACTGTCAGTCGAGTCACTACGCAAGA CCAGTCATCGCATTTCTCAACCCTTAATCATATGCTTGCATAAGGCTGTGAAGACTGACTCAGTAAACGG AACTCAGAATATTGGAAATATAACAACAAGTGTGCATTGCAGTGGAAGTGGAGCTGTATTTTAGCTTGGA TAGTGATCGGCAGAGGAAGATTGTTGTGAGCTCTTTCCTTGTGTTTATACGAGCTTGAGTGCCTCTAGTG TAAAAGGAATTGCAGCCTAAAGAAGAAAATTTCAACAAGATACTTTTCTCATCTGTCAATGGCCCAAGAC GCCCAAGACACGTGAAGAAGGGACACTAAACATTCAACTATTATTATAAAGAGGTGGACAGAGACATACT AACCAGAGAGAGAGAGAAGACAGAAGGAGAAACCATGATGGAAGTCGGCTATGGGGGCCGTCTGAATGGA CACAGCTATGACAGTGGCAGTTCAACCTTGAATCGAGGAGGAGGAGGAGGAAATGGAGATGTGAGATGGG AGAAGGATACAGTTTCAATCCGACGGGCCCAGGGATTGGGGTTTGGTATCGCAGTGAGCGGTGGTCAGGA TAACCCCCATTTCTCCAGCGGTGAGACCTCTATCGTCGTGTCAGACGTTGCACCCAATGGACCGGCAGAG GGTATGCTCAAAAAGAATGATCGTATCCTATCTGTAAACGGGGCCAGCATGGAGAATGCTTACCACAGCG ACGCCATTGGAGCTCTGAGACACAGTGGAGAAGTTGTCACCATTACATATAAACGCAAGATGACCGGACC CCCTCCACGTGCAGCTGACACACAGCTCGATGGCATTGACAACAAGCAATACATACGACTCTCAAAGAAT AGGAATGAGAGTTATGGAATGCGACTCGGGTACAAGCTCTTTGTGGATAGCCTGAATGAGTACGGTGTCG CAGCATCCTTGGGGCTCAGGAAAGGAGATGAGATCCTTACGATAAATAACACCCCTGTGGCGCAGGTCAG TCTATCTGATGCCCATGCAATCATTGAGCGGTCAAGGGATGGTATGGAGCTGGACATCACTAGACCGATT GCCTTGGACAGAGTATCTCTGGCCAGTTCCATCGAGCAGTACACTGCTCCTACCCTGCAGCCAGGGCTAC AGGCAGGCCCTCCCAGACCCCCACCACCAGCCGAGGAGGATGAATACATTCCTCCTCCCCCAAGACCACC CAGTCCAGGTCAGGATGACTTCAGAGATGGCATTCCTGTTGACCCGGAAGGAGATTCCCATGTGGTGAGC TTCAACAAGGGAGGCAGCGTGGGTATCAAGCTGATCGGAGGTAACGAGGTGGGAATCTACGTTGCTGGTA TCAAACCAGGTAGCCCTGCAGAGAGCTCTGGTGTAGCCATCGCAGACAGGATCACATGTGTAAACGAGGA AATCTATCTCCAAGGTTTGACAAAGGAAGAGGTGGCTCTCCTTCTGCTCACGTTACCTGATTTCATTAAG CTAGAAGTCAGACACAGCAGATCAGCTTTTAGAAATGTCATGGAATCGGGGAGAGGAGACAAGTTCTACA TCAAAGCACATTTTGCGTATGAGAACCCAGTAGGAGAGGAGTTGAAGTTCCCCCGTGGTACAGTCTTCAG AACGGTAGACACCTTCCCAGAGGGTGCTATGGGTTACTGGTATGCCATCAGATTGGATAGGAATAACATT GCAACAGAGAGGGGACTCATTCCGAACAACAGCAGAGCAACTCAGAGTAACATGGCTCAGCAGTCTGTGG AGACCGTCAAACTTCTCAACACAAGTGGTACTAGGAAAGAGTTCTTCAAGAGGAGGGGCAATAGAGCCAG CATGAGGAAGATCAAGAGTTCTGCTGTTAGAATCGAGATCGAGGATGAATACGATGAGGTTGTCTTTGCT GGAACACCAGGTAAATTCCCTGCCTATGAGAGAGTCACTCTAGGAACAGTTGGTTTTGCCAGGCCTGTGG TTATCTTTGGACCTCTAGCGGACATTGCCCGAGACCATCTCAAGGATGCCCTCCCGGATAAATTTGAGAA TCCTCTTACAGAGCACACATTTGACAGTCACCCAGGGGAACAGCTAAAGATAAATCCTCAAGGCATGGTC AAGATTGGTTCAATCAAAGACTGCATTGACAAGGGTAAACACTGTCTGCTTGATGTGACGCCATTTGCAG TTGAGCAGCTGAACCTGATGCAGTACTACCCCATCGTCATCTTCCTGAATGCAGACTCTCGCTCGCAGGT CAAGGATATCAGGGGACAGTACATGAGTCCAGAGCAGAACAAGGGCTCCAAGAAGCTATACAAGACTAGC TTGACCCTCAAGAAGGCCTTTGCACATCTCTTCACAGCCATGATCCCTTTGACCACTGATAGCCAGTGGC TCCAGAATGTGAAAGATGCTATCAGGATACAAGAAAGGAAAGAAATCTGGATGTCAGAGACCAAGTACGA GGAACCTGAGGCAGATGAGAGTCACCTACCTCTGGTGGGCCCCATCATCCTACCAATTGACTATGATACC GATGCGGAATCCATCTTCCCTGACTCCCATGCCAATAGCACTCTTGACTCTGACATCGAGCGGCTTTCTC CCACGATGACGGCAAACACCTCAGCAACCCCTGGCGCCGCCTCGGAGAGCTCATTCAACTTCAGTGAGAA AGAAGTCAAAGCTACCCTTCCTAGGACAGACCCACCTCCCAAGAGATACTCCTCAGATGAGGAAGAGTTT CCATCAAGCTTTGACCGCAGACGTAAATCTCGATCCCGTTCCAAGAAGAAGGAGAGTATCTGGTCATCTC TGAGGCGCAGCATGTCCCGCTCTCGCTCCAGATCTCGGGATAGGAGAGAAGAAGCCAGGGAGATTGAAAG GGAGGAAGCCGAAGAGGAGAGGAGAGAGCAGGAAAGAGCAGAGAGGGAAAGAATGGAAGAGGAGATGAAC AAACGGAACACTCTAGAGCGAGAGCCTGAGCAGCGCCCTTCAAAGAAAGACCAGCACCGTCGTCGAGACG AGGCCAAGGAGATTGCAGAGGAAACCCTGAACTCAAGGGGCAAGTCACAAGGTCAGGAAGACCTGAGAGC TCCAAGTGATACCATCAACCTCGGCACCCTTGTTGATGAGTTCAAGTCCTTTGGCATTGATGGTGATGTC AGCGTCAATGGCCACATGGAGCCAGAACCTATCAGTGCCTCACTGGACGTAGAAGTGGAATCAGCCCCTC CTCCTTCTGCATTCAGACCGCAGCCACAACCCAGGACCAAGCCCATCCAGCCTGTAGTCTCTCTGGTCCA ACATTCGGCACCCATCGAGACAGACCTTGATGCCATTCAACCCCCTTACACTGGCTATGAGGATTCAGAT CTTCTGCCTGCAGCACCCAAGACTCCAGTCCTGGAGACAACATTCGGGCCAGAAGACAGTGACAGTGATG ATGATGAAGATGAGGGTCCTCCACCTCCTGCACGAATGGAACATAATCCAGCAGAGACTCGTCCAGCAGA GCCTGCCTCTCGTCCCAGGAGAGTAGCTGCAACTCCAAAGCAGCAGACCCCAGAAACTCGTCGTTCAGAA CCATCCCGCCCAAAGAGGACACCAAATACCCCTATGTCCAAGCCTGAAGCTCGTCCTGAAATAGAGCTGT CTTACTCAGCAGAAGTTTCACGTCCAAAGAGGACATCATCAGTATCTCGCCCAGCAGAGCCCACGGTGGA TATTTCTGCACCTAGCTGGGAGATCCCAGACTTCCAGGAACCAACCCGCTCATTGCCCCCTGCACGCCCT CCTCCTCCCCCACCAGAAGAAGAGGAGTTACCCCCACCACCCAAACCAGAATTACCCCCTCCAAAGCCAG TGGAGCCTGTATACAGTCAGGTGCAAAAGAGCAAACCTAGTCCACATGTTAGTCCTCTGGGATGGGACCA CAGCGAGGTAAAGCAGAGTAAGCCAAGTCCAAGGGCCAGTCCGCAAGGATGGGACCTACCTGCACAGGTA GAACCACCACCACCACTTGCTCAGCCTGCTTTCCAGACCTCTACACCAGCCACCAGCAGCTCAAGATGGG AGACCAAAACAGAAACTGAGGTACACACCATTACGGTTGGGTCAGGCTTCGTCAATGCAGAGGTCAAGAA AGTGGACCTTGGTGGTGACAAGTCAGAGGATGAGGTGTCTGCTGATGCATACCGCAACCAGCTTGCAAAA ATGGCTAATCTGATCAAGCGCAGTGATAGCCCACGTGGATGGTCGAGCGCCACTAAAGCGCCCTCTCAAA TCAGGCCAGTGCGGGCGCCCAAACCACCAACAACGGGACAAACTGGAAATGCCTACCTGGACAGTAAAAA GGCAAGGGAGAACTTCTTTAATACTTCGGAGCCCAATGCGCCACCCAAAGCACCAGGATCACCTTATGAC AGGGAGTCCTACCAGGCTCACAAAGAGAGGACCAAGAAGAGATCGCAGTCACCAGGCAGACAGTACCAGG AGAGGTCAGGCATCTACCCACCACATAACAACTATGACAAGAAGAAGCCTGCATTCAAACCCATCCCAGT CGATGAGGTAGCCTTAAAATCTGATGAGGGACAAGAAGTTGTGGATACCGTCAGAGGAACCTTCGACAGC AACGGAGGGGTACTGAACTCCCCTTCCACCGGTGTGAGCATCCACATCCCTAAGGGTGCCATCCCAGAGG GTTGCAGCCAGGAGCTCTACTTTAAGGTCTGCAGAGATACCAGTATGCTGCCTCCACTCGACAAGAACAA AGGAGAGACATTGCTGAGCCCGCTGGTGATGTGTGGCCCTCACGGTCTCAAGTTCATGAAGCCTGTAGAG CTGAAGCTGCCTCACTCTGCATCCAACACCCAAGAAGGTTGGGAATTTAACCTCAAGTCTAGTGATGCAG GACAAGGAGAGCCAGCACAATGGAAGAACCAGAACATCCCTGGCCTGAAGAGTGCTGAGTCTAAGCCCAT CACCAAGACAGTGTCTGTCATGGTGGACCACTTCTAGAACCACCTCCAAGACCACACTACCATCCCCAGA ATAGTACAACACATGGACTAGATCTTCATGGTGATGACTGATATGATAAATGTATTCAATATCAACATAT GTAGAGCAAGATTTACATGGATAGGTCTACATGTATATCTAACATACAGGATTAAACTCCTCCTTTGTTT AGATACAGTTCTACACTTGGAATGACATGTCTGTGCCTCTAGGAAACAACTCATACCTGTTTATGACATC TTGCTTCATGTTCAGTTCTTAATGTCTTACATTGGAATGTGTTGTGTAGGATAGAGGTCAAAGAGAACTC GAGGTGAATCAAATTGTCGGTAGCAGCTTTACATCAAGACCAATGATATTTGATGAAAATTTAGTGCCAA CTATGTTTTGTCATCCATTTTTTTAATGTCTAGGTATTTGATGGAAGATATTAGACATGTCAGGACCATA TTAGAATATATCTTTTATCAAGTCTTGTCGCCTTAATGATATCCATGTGAGAGAAGAAAAAACACTGAAT GTCATGTTGATAGAATTAAACTTCAGATTCTTCTTTCAGTCATAAGATCAGCTTTAGAAATTCATTTCCA ATATTTCCCATTTTTCCATGAACAACATGTATTCTTACATCCCATCCCATTGATATGTTGTAAATACAGT ACTCCATGTATTCCAGTACAAAGCCTGATTCTGTACTAAACAGTCAACAGTACTTAGCTTAGATTGTATC TGCTTTATTCATTCCAGAGGGAACTCAAATATTTGCTTATACCTTGTATTTTTTAGATTAAAACATCATC ACTAACACTAATGTATAAATAATACTTTTTTTTCTTCTTTATGTCATATTGTTTTTCTTCTCTGTTTTTG TTCAATTTTGGAGCAGAAATTACCCTGGACTTATTGACTTCAAATCCCTCCCAGTGGGTTTGTGTATGAA TTCTTAATAACCAATGGAAAATTTGCTCTGCTAATCATGCCAAATTGGTAGGCTAAGTGTACTTTTATAT TAAGATTTAGATCAATATTTTAGTTAAGCTCTTCCAAACGCATTATAAACCAGATTTTATTGACCTTTTT GCAAGATACATGTATATATTCCTTTTATGATGAAATGTGTTGGAGGACAAAATAAAGGATTGTGTCCAAT TATTTTGTCACATAATTGTAGTCCAAACACCAATGTATTTTTATACTAATTAGCAGTGCCTTTACCAGCA CAATTGGAAGTAATTTGAGATAGACCTAGCAGCAATCAATGATTTCATTTGATATGATGTAAATAGTATT CTGCAGTTGGCGGGCAATGAGACTAAGAATCAATAATAAGGCAGAGTTCCGACTCTGTTTCTGAAGATTG TATCAAAATTGTAAATGAGAATTTAGAAATTTTAAATGTCCAACTGTATTTGTAAATATTGATGTAGATT TCAAATCATGAATACAAAATTGTAAACATTTAGCTTATTTTTTAGTCTAACCAAAGTATTACTATTTATC TGTATGATTGCTTATTTGCTTTAACACATTACCTTGCTGTCTAGTGTTTCATATTCTGTGATTGTAAAAG CCTTTTTTTTATATTCATTATTTGTTACTAATCATATATATGTAGAGAAATCCTACCTCTATTAATTGCA TCTGATTTCCTAGAGTAACAAAAGAAGAGGAGGTGGAATTTTCACTGAATGATCAAGTTTCTATGATTGT CAGGCTTAATATAGTCTTTTTTTGCTATCAAATTCGTAGCCTACTTAGCCTGCATGTTTAGTAATGTAAG TTTACACTTCAGTGAATGCTGATTGCTGCAAAGTAGAAGGAGGAAGCTAGAATGGAATTAAAGAAGATGT ACAAAAAATATCTTTGTTTAAAATCATCCAACTTGTGATTGGTTTCTTATCGAACCGTGTCGAGTAAACA GTGTTGAGTTATGTGACATCAAACTCTGAAATAAGAGTGAAGACTTATATTCTGTAAACTGAATTTCAAT GCAGTTTCATTTTTCATTTATGCATTACAAATTCATGGCTTTATTCCTACTAGACATACAATTATGTAGA CATAACAATGCCCTTCAATCTCTTGAATATCATCCATATATGTTTAAGACTTTATTTTTGTAGCATTGCC ACCATTTTGATTGTTTGACAGCTGTATTCAGCAGCCTGTATCTTGGAAAGTATATTTAGTGTTTATCTGC TTTCACGTTTGTTGTGGTCAAAGTCTCTGTTTGAAATTTTTTTCAAACACTGAATTTCGTATTCATCCAA TAATGTCAATGCCTTCTCATATGCACAGAAAACATTATATTACATGTTTAATGGCACCAAGAATTTTTTT TTCTGTTTTTCTTGGCAATATATAATTGCTTTTATAATTTTACATTTAGGTTTAAAATTTGTTAGTTTTC CATCGTTTCACCATGCACTTTATTCCAGGTATAATAATTGTTCTCATTCATGGACTACCTATGTCTTAAT AGGTAGAGAGGTATACCGGTAGTTACGGCTTCCATTGTGAAAAATGCTTCATCACTTGTGTATTGTACCA TTCAACATTCATATTCTCAATGCTCTTGTAACATTCAGTTTTAACTTACAAAATAATAAGATAGAGAACG ATTTATTTGTTTGTTGTGTTTAACAAATATTTTCTAGCAGATATTTTAAGTTCTGTTATAGTATTCATGA AAATAACTTGTATTCATTCAACTAGTTATGCTTGTATAATTAAATGTGTTGTATTTTGAGAAATTGTATT TGTAATAGAGGCATCAATATCCATTCTATTCTGCTGCTTTTATATCAAATTATAGAAATTGCAGATCACT TTGTATTAGTTTTACTGTACCTTCTCACTCTACGGGTGTTGGGCACTTATGATTATGTAATTAAGGGTTC ATATCGTCATCTTGTGATGAAATAAAATTTCCAACCAAATTTTTTTGTTGTGGTTGCATTCTTTTATTGC TTATTAACAGTGATTTCGCACTTCCTTGTGTGTCTTTCAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
