Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_031000168.1 PREDICTED: Strongylocentrotus purpuratus tight junction protein ZO-1 (LOC577362), transcript variant X3, mRNA TTTCTCAGCAGTACAATAGGCGATTCCTTGGAGATGTAAGGTCTAGTGGTGTAGCTGTTATCCTGGTGAT TTGAAGCCTTCATGTATTACACTCTCCATGTATTACCATAGCCTGTATTTGAGATGACGATTAGAAGATA TTTCCTCCACATCCATTAATTGCAGCCTAAAGAAGAAAATTTCAACAAGATACTTTTCTCATCTGTCAAT GGCCCAAGACGCCCAAGACACGTGAAGAAGGGACACTAAACATTCAACTATTATTATAAAGAGGTGGACA GAGACATACTAACCAGAGAGAGAGAAGACAGAAGGAGAAACCATGATGGAAGTCGGCTATGGGGGCCGTC TGAATGGACACAGCTATGACAGTGGCAGTTCAACCTTGAATCGAGGAGGAGGAGGAGGAAATGGAGATGT GAGATGGGAGAAGGATACAGTTTCAATCCGACGGGCCCAGGGATTGGGGTTTGGTATCGCAGTGAGCGGT GGTCAGGATAACCCCCATTTCTCCAGCGGTGAGACCTCTATCGTCGTGTCAGACGTTGCACCCAATGGAC CGGCAGAGGGTATGCTCAAAAAGAATGATCGTATCCTATCTGTAAACGGGGCCAGCATGGAGAATGCTTA CCACAGCGACGCCATTGGAGCTCTGAGACACAGTGGAGAAGTTGTCACCATTACATATAAACGCAAGATG ACCGGACCCCCTCCACGTGCAGCTGACACACAGCTCGATGGCATTGACAACAAGCAATACATACGACTCT CAAAGAATAGGAATGAGAGTTATGGAATGCGACTCGGGTACAAGCTCTTTGTGGATAGCCTGAATGAGTA CGGTGTCGCAGCATCCTTGGGGCTCAGGAAAGGAGATGAGATCCTTACGATAAATAACACCCCTGTGGCG CAGGTCAGTCTATCTGATGCCCATGCAATCATTGAGCGGTCAAGGGATGGTATGGAGCTGGACATCACTA GACCGATTGCCTTGGACAGAGTATCTCTGGCCAGTTCCATCGAGCAGTACACTGCTCCTACCCTGCAGCC AGGGCTACAGGCAGGCCCTCCCAGACCCCCACCACCAGCCGAGGAGGATGAATACATTCCTCCTCCCCCA AGACCACCCAGTCCAGGTCAGGATGACTTCAGAGATGGCATTCCTGTTGACCCGGAAGGAGATTCCCATG TGGTGAGCTTCAACAAGGGAGGCAGCGTGGGTATCAAGCTGATCGGAGGTAACGAGGTGGGAATCTACGT TGCTGGTATCAAACCAGGTAGCCCTGCAGAGAGCTCTGGTGTAGCCATCGCAGACAGGATCACATGTGTA AACGAGGAAATCTATCTCCAAGGTTTGACAAAGGAAGAGGTGGCTCTCCTTCTGCTCACGTTACCTGATT TCATTAAGCTAGAAGTCAGACACAGCAGATCAGCTTTTAGAAATGTCATGGAATCGGGGAGAGGAGACAA GTTCTACATCAAAGCACATTTTGCGTATGAGAACCCAGTAGGAGAGGAGTTGAAGTTCCCCCGTGGTACA GTCTTCAGAACGGTAGACACCTTCCCAGAGGGTGCTATGGGTTACTGGTATGCCATCAGATTGGATAGGA ATAACATTGCAACAGAGAGGGGACTCATTCCAAACAACAGCAGAGCAACTCAGAGTAACATGGCTCAGCA GTCGGTGGAGACTGTCAAACTTCTCAACACAAGTGGTACTAGGAAAGAGTTCTTCAAGAGGAGGGGCAAT AGAGCCAGCATGAGGAAGATCAAGAGTTCTGCTGTTAGAATCGAGATCGAGGATGAATACGATGAGGTTG TCTTTGCTGGAACACCAGGTAAATTCCCTGCCTATGAGAGAGTCACTCTAGGAACAGTTGGTTTTGCCAG GCCTGTGGTTATCTTTGGACCTCTAGCGGACATTGCCCGAGACCATCTCAAGGATGCCCTCCCGGATAAA TTTGAGAATCCTCTTACAGAGCACACATTTGACAGTCACCCAGGGGAACAGCTAAAGATAAATCCTCAAG GCATGGTCAAGATTGGTTCAATCAAAGACTGCATTGACAAGGGTAAACACTGTCTGCTTGATGTGACGCC ATTTGCAGTTGAGCAGCTGAACCTGATGCAGTACTACCCCATCGTCATCTTCCTGAATGCAGACTCTCGC TCGCAGGTCAAGGATATCAGGGGACAGTACATGAGTCCAGAGCAGAACAAGGGCTCCAAGAAGCTATACA AGACTAGCTTGACCCTCAAGAAGGCCTTTGCACATCTCTTCACAGCCATGATCCCTTTGACCACTGATAG CCAGTGGCTCCAGAATGTGAAAGATGCTATCAGGATACAAGAAAGGAAAGAAATCTGGATGTCAGAGACC AAGTACGAGGAACCTGAGGCAGATGAGAGTCACCTACCTCTGGTGGGCCCCATCATCCTACCAATTGACT ATGATACCGATGCGGAATCCATCTTCCCTGACTCCCATGCCAATAGCACTCTTGACTCTGACATCGAGCG GCTTTCTCCCACGATGACGGCAAACACCTCAGCAACCCCTGGCGCCGCCTCGGAGAGCTCATTCAACTTC AGTGAGAAAGAAGTCAAAGCTACCCTTCCTAGGACAGACCCACCTCCCAAGAGATACTCCTCAGATGAGG AAGAGTTTCCATCAAGCTTTGACCGCAGACGTAAATCTCGATCCCGTTCCAAGAAGAAGGAGAGTATCTG GTCATCTCTGAGGCGCAGCATGTCCCGCTCTCGCTCCAGATCTCGGGATAGGAGAGAAGAAGCCAGGGAG ATTGAAAGGGAGGAAGCCGAAGAGGAGAGGAGAGAGCAGGAAAGAGCAGAGAGGGAAAGAATGGAAGAGG AGATGAACAAACGGAACACTCTAGAGCGAGAGCCTGAGCAGCGCCCTTCAAAGAAAGACCAGCACCGTCG TCGAGACGAGGCCAAGGAGATTGCAGAGGAAACCCTGAACTCAAGGGGCAAGTCACAAGGTCAGGAAGAC CTGAGAGCTCCAAGTGATACCATCAACCTCGGCACCCTTGTTGATGAGTTCAAGTCCTTTGGCATTGATG GTGATGTCAGCGTCAATGGCCACATGGAGCCAGAACCTATCAGTGCCTCACTGGACGTAGAAGTGGAATC AGCCCCTCCTCCTTCTGCATTCAGACCGCAGCCACAACCCAGGACCAAGCCCATCCAGCCTGTAGTCTCT CTGGTCCAACATTCGGCACCCATCGAGACAGACCTTGATGCCATTCAACCCCCTTACACTGGCTATGAGG ATTCAGATCTTCTGCCTGCAGCACCCAAGACTCCAGTCCTGGAGACAACATTCGGGCCAGAAGACAGTGA CAGTGATGATGATGAAGATGAGGGTCCTCCACCTCCTGCACGAATGGAACATAATCCAGCAGAGACTCGT CCAGCAGAGCCTGCCTCTCGTCCCAGGAGAGTAGCTGCAACTCCAAAGCAGCAGACCCCAGAAACTCGTC GTTCAGAACCATCCCGCCCAAAGAGGACACCAAATACCCCTATGTCCAAGCCTGAAGCTCGTCCTGAAAT AGAGCTGTCTTACTCAGCAGAAGTTTCACGTCCAAAGAGGACATCATCAGTATCTCGCCCAGCAGAGCCC ACGGTGGATATTTCTGCACCTAGCTGGGAGATCCCAGACTTCCAGGAACCAACCCGCTCATTGCCCCCTG CACGCCCTCCTCCTCCCCCACCAGAAGAAGAGGAGTTACCCCCACCACCCAAACCAGAATTACCCCCTCC AAAGCCAGTGGAGCCTGTATACAGTCAGGTGCAAAAGAGCAAACCTAGTCCACATGTTAGTCCTCTGGGA TGGGACCACAGCGAGGTAAAGCAGAGTAAGCCAAGTCCAAGGGCCAGTCCGCAAGGATGGGACCTACCTG CACAGGTAGAACCACCACCACCACTTGCTCAGCCTGCTTTCCAGACCTCTACACCAGCCACCAGCAGCTC AAGATGGGAGACCAAAACAGAAACTGAGGTACACACCATTACGGTTGGGTCAGGCTTCGTCAATGCAGAG GTCAAGAAAGTGGACCTTGGTGGTGACAAGTCAGAGGATGAGGTGTCTGCTGATGCATACCGCAACCAGC TTGCAAAAATGGCTAATCTGATCAAGCGCAGTGATAGCCCACGTGGATGGTCGAGCGCCACTAAAGCGCC CTCTCAAATCAGGCCAGTGCGGGCGCCCAAACCACCAACAACGGGACAAACAGGAAATGCCTACCTGGAC AGTAAAAAGGCAAGGGAGAACTTCTTTAATACTTCTGAGCCCAATGCGCCACCCAAAGCACCAGGATCAC CTTATGACAGGGAGTCGTACCAGGCTCACAAAGAGAGGACCAAGAAGAGATCGCAGTCACCAGGCAGACA GTACCAGGAGAGGTCAGGCATCTACCCACCACACAACAACTATGACAAGAAGAAGCCTGCATTCAAACCC ATCCCAGTCGATGAGGTAGCCTTAAAATCTGATGAGGGACAAGAAGTTGTGGATACTGTGAGAGGAACCT TCGACAGCAACGGAGGGGTCCTGAACTCCCCTTCCACCGGTGTGAGCATCCACATCCCTAAGGGTGCCAT CCCAGAGGGTTGCAGCCAGGAGCTCTACTTTAAGGTCTGCAGAGATACCAGTATGCTGCCTCCACTCGAC AAGAACAAAGGAGAGACGTTGCTGAGCCCGCTGGTGATGTGTGGCCCTCACGGTCTCAAGTTCATGAAGC CTGTAGAGCTGAAGCTGCCTCACTCTGCATCCAACACCCAAGAAGGTTGGGAATTTAACCTCAAGTCTAG TGATGCAGGACAAGGAGAGCCAGCACAATGGAAGAACCAGAACATCCCTGGCCTGAAGAGTGCTGAGTCT AAGCCCATCACCAAGACAGTGTCTGTCATGGTGGACCACTTCTAGAACCACCTCCAAGACCACACTACCA TCCCCAGAATAGTACAACACATGGACTAGATCTTCATGGTGATGACTGATATGATAAATGTATTCAATAT CAACATATGTAGAGCAAGATTTACATGGATAGGTCTACATGTATATCTAACATACAGGATTAAACTCCTC CTTTGTTTAGATACAGTTCTACACTTGGAATGACATGTCTGTGCCTCTAGGAAACAACTCATACCTGTTT ATGACATCTTGCTTCATGTTCAGTTCTTAATGTCTTACATTGGAATGTGTTGTGTAGGATAGAGGTCAAA GAGAACTCGAGGTGAATCAAATTGTCGGTAGCAGCTTTACATCAAGACCAATGATATTTGATGAAAATTT AGTGCCAACTATGTTTTGTCATCCATTTTTTTAATGTCTAGGTATTTGATGGAAGATATTAGACATGTCA GGACCATATTAGAATATATCTTTTATCAAGTCTTGTCGCCTTAATGATATCCATGTGAGAGAAGAAAAAA CACTGAATGTCATGTTGATAGAATTAAACTTCAGATTCTTCTTTCAGTCATAAGATCAGCTTTAGAAATT CATTTCCAATATTTCCCATTTTTCCATGAACAACATGTATTCTTACATCCCATCCCATTGATATGTTGTA AATACAGTACTCCATGTATTCCAGTACAAAGCCTGATTCTGTACTAAACAGTCAACAGTACTTAGCTTAG ATTGTATCTGCTTTATTCATTCCAGAGGGAACTCAAATATTTGCTTATACCTTGTATTTTTTAGATTAAA ACATCATCACTAACAATAATGTATAAATAATACTTTTTTTTCTTCTTTATGTCATATTGTTTTTCTTCTC TGTTTTTGTTCAATTTTGGACCAGAAATTACCCTGGACTTATTGACTTCAAATCCCTCCCAGTGGGTTTG TGTATGAATTCTTAATAACCAATGGAAAATTTGCTCTGCTAATCATGCCAAATTGGTAGGCTAAGTGTAC TTTTATATTAAGATTTAGATCAATATTTTAGTTAAGCTCTTCCAAACGCATTATAAACCAGATTTTATTG ACCTTTTTGCAAGATACATGTATATATTCCTTTTATGATGAAATGTGTTGGAGGACAAAATAAAGGATTG TGTCCAATTATTTTGTCACATAATTGTAGTCCGAACACCAATGTATTTTTATACTAATTAGCAGTGCCTT TACCAGCACAATTGGAAGTAATTTGAGATAGACCTAGCAGCAATCAATGATTTCATTTGATATGATGTAA ATAGTATTCTGCAGTTGGCGGGCAATGAGACTAAGAATCAATAATAAGGCAGAGTTCCGACTCTGTTTCT GAAGATTGTATCAAAATTGTAAATGAGAATTTAGAAATTTTAAATGTCCAACTGTATTTGTAAATATTGA TGTAGATTTCAAATCATGAATACAAAATTGTAAACATTTAGCTTATTTTTTAGTCTAACCAAAGTATTAC TATTTATCTGTATGATTGCTTATTTGCTTTAACACATTACCTTGCTGTCTAGTGTTTCATATTCTGTGAT TGTAAAAGCCTTTTTTTTATATTCATTATTTGTTACTAATCATATATATGTAGAGAAATCCTACCTCTAT TAATTGCATCTGATTTCCTAGAGTTACAAAAGAAGAGGAGGTGGAATTTTCACTGAATGATCAAGGTTCT ATGATTGTCAGGCTTAATATAGTCTTTTTTTGCTATCAAATTCGTAGCCTACTTAGCCTGCATGTTTAGT AATGTAAGTTTACACTTCAGTGAATGCTGATTGCTGCAAAGTAGAAGGAGGAAGCTAGAATGGAATTAAA GAAGATGTACAAAAAATATCTTTGTTTAAAATCATCCCACTGTGATTGGTTTCTTATCGAACCGTGTCGA GTAAACAGTGTTGAGTTATGTGACATCAAACTCTGAAATAAGAGTGAAGACTTATATTCTGTAAACTGAA TTTCAATGCAGTTTCATTTTTCATTTATGCATTACAAATTCATGGCTTTATTCCTACTAGACATACAATT ATGTAGACATAACAATGCCCTTCAATCTCTTGAATATCATCCATATACGTTTAAGACTTTATTTTTGTAG CATTGCCACCATTTTGATTGTTTGACAGCTGTATTCAGCAGCCTGTATCTTGGAAAGTATATTTAGTGTT TATCTGCTTTCACGTTTGTTGTGGTCAAAGTCTCTGTTTGAAATTTTTTTCAAACACTGAATTTCGTATT CATCCAATAATGTCAATGCCTTCTCATATGCACAGAAAACATTATATTACATGTTTAATGGCACCAAGAG ATTTTTTTTCTGTTTTTCTTGGCAATATATAATTGCTTTTATAATTTTACATTTAGGTTTAAAATTTGTT AGTTTTCCATCATTTCACCATGCACTTTATTCCAGGTATAATAATTTTTCTCATTCATGGACTACCTATG TCTTAGGTAAAGAGGTATACCGGTAGTTCCGGCTTCCATTGTGAAAAATGCTTCACTTGTGTATTGTACC ATTCAACATTCATATTCTCAATGCTCTTGTAACATTCAGTTTTAACTTACAAAATAATAAGAACGATTTA TTTGTTTGTTGTGTTTAACAAATATTTTCTAGCAGATATTTTAAGTTCTGTTATAGTATTCATGAAAATA ACTTGTATTCATTCAACTAGTTATGCTTGTATAATTAAATGTGTTGTATTTTGAGAAATTGTATTTGTAA TAGAGGCATCAATATCCATTCTATTCTGCTGCTTTTATATCAAATTACAGAAATTGCAGATCACTTTGTA TTAGTTTTACTGTACCTTCTCACTCTACGGGTGTTGGGCACTTATGATTATGTAATTAAGGGTTCATATC GTCATCTTGTGATGAAATAAAATTTCCAACCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
