Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999712.1 PREDICTED: Strongylocentrotus purpuratus C-1-tetrahydrofolate synthase, cytoplasmic (LOC589933), transcript variant X2, mRNA GCGGTATATACTCAGTGGTATATTTTCATTCATTCTCTCTCCGCGTATTATGCTCTGATCGAAAGTACAC AGTCTGCGATGATCATCTTTCGACGATTTTCGAATTTCTTGCCATGTCAGCAAAGACGTTTCTATATACC GTTTGACATTCTTTTATAAATCCATGACATTGTGTGCGTGAAATTTATTGTGATCATGTTTTTCATCTCT AGACAGTGATAAATCGATATTTCTGGAGAATATTATCCTTCACTGCATCATATTTCCTTGTCTTTCATCG CGCAAGCCGAGCACGTTGTGAAGCAGCGCCCTCGATAGTCAGCAGCTGATCAGCTCAAAGCATGTTTCGA ATACGATGTGCATGTCTTATCTCGAAATCGGAGGTTGTCAGTCCAAGGTTCGCTGAAATAAAACGTTGGG TCTCAAATACAACGACAAGAGAACTGTCGAGAACGACACTTTCTGCCAGTCAGCGTCTGAAAGTTCTTCC ATATCCATACCTGCGCCCGTGTCTAAATATGGCCAGCATAATCGATGGAAAGGGGATTGCAAAGGAGATT CGACAGGAGCTCCAGGAAGAGGTGGCCATGTTGAAAGAGAGACATCCTGGCTTCATGCCTGGTCTTGCCA TTATTCAGGTTGGAGATAGATGTGATTCTAATCGCTACATCAAATTCAAGCTTGCTGCAGCTGCTGAGAT TGGTATGGTGGCCCAGCATTACAAGCTTCCAAGCTCAAGCACCCTCCCAGAGGTGGTAAATAAGATTCAA GATTTGAACAAGGATCCACGCATCCATGGTATCCTGGTTCAGATGCCTCCTGAGACCAACGAACCCATAG ATGAAGATGCTCTACTCAACGCTGTAGCTCCAAACAAAGACGTGGATGGGTTGACGGATCACAATGCAGG GAAGTTAGCCCGTGGTGAGCTTGGTCAATGCTTTCTACCATGTACACCTAAGGGATGTCTGGAGCTACTC AAGAGATCAGGTGTGGAGGTTGAAGGCAAAAGGGTTGCTGTTCTTGGAAGAAGCAAGATAGTTGGTGCTC CAATGTCGGACCTTCTGAGGGCCTCCAATGCAACAGTCACCATGTGCCACTCCAGGACTAAGAACATTGA TGAGATTATCCGTGAATCTGATGTGATCGTGGTTGGTATACGTCAGCCCAAGTTTGTCCAGAAGGAATGG ATTAAGCCTGGTGCAGTAGTCATTGACTGTGGAATCAACTTTATTGAGGATCCATTTGCCAAGCAAGGTA GGAAGATGGTAGGTGATGTAGACTATGAAGGAGTGAGGGAGGTAGCAGGAGCTATCACCCCTGTCCCTGG TGGCGTAGGACCCATGACTGTAGCCATGCTGATGGGCAACACGGTGGAGAGTGCCAAGAAGACCGTCGAA GGAACTCTGGGTGACCAATGGAAGATGAGATACCTACCCCTTCATCTCAAGCAACCCGTCCCTACCGACA TCGACGTCTCCAGGGCCCAGAAACCCAAGGAGGTATCAGAGCTAGCCCAGGAACTACAGCTCCTACCCAG TGAGATAGACTACTATGGCAAGACCAAGGCCAAGATCTCTCTATCTGTTCTAGATCGGCTGAAAGACAGG GCTCCAGGGAAGTACGTCGTCGTTGGAGGAATCACACCAACTCCTCTAGGTGAAGGCAAGAGCACCACCA CTATCGGTCTGGTCCAGGCGATGGGCTCGCATCTCAAAAAGAATGTGTTTGCCTGCGTGAGACAGCCATC CCAAGGACCCACCTTTGGTATCAAGGGCGGAGCAGCAGGTGGTGGTTACGCCCAGGTCATTCCTATGGAA GAGTTCAATCTTCACCTTACCGGAGACATCCATGCAATCACAGCCTCGAACAACTTGCTCGCTGCAGCCA TTGATGCTAGGATCTTTCATGAATCAACTCAGACAGATAGCGCCCTCTATGGCAGGCTAGTGCCAAGCAA GAAGGGTGTCCGAGAATTTTCAAACATCCAGATAGGCAGGCTTCAGCGTCTTGGCATCGACAAGACCAAC CCAGATGATCTGACAGAAGATGAGATACACAGATTTGCTCGCCTTGACATCGACCCATCTACCATCACAT GGCAGAGAGTCTTGGACACCAATGACCGCTACCTGCGTAAGATCACCATTGGTCAGTCACCCACAGAGAA GGGCTTCACCCGTGAGACTCAGTTCGACATCGCCGTGGCCAGTGAGATCATGGCCATCCTGGCCCTCACC ACCGACCTGAAGGACATGAGGGAGCGTCTGAGTAAGATCGTCGTTGCTAGCAACAAGCAGGGAGAACCAG TGACTGCTGATGATGTTGGTGTGGGAGGTGCTCTGGCTGTTCTCATGAAGGATGCTATTAAACCGAACCT CATGCAGACACTTGAGGGAAATCCAGTATTTGTGCATGCTGGTCCATTTGCCAACATTGCCCACGGTAAC TCTTCAATCCTGGCTGATAAAATTGCTCTCAAACTTGTTGGAGAACATGGATTTGTAGTCACTGAGGCTG GTTTTGGATCAGACATCGGAATGGAGAAGTTCTTTGACATCAAGACTCGTTACTCTGGTCTGACTCCCAA TGCCGCTGTGATCGTAGCCACTGTCAGAGCACTCAAGATGCATGGAGGCGGACCTAATGTGACAGCTGGA AAGCCTCTTGCTGCTGAATACAATGAGGAGAATCTAGAACTCCTAGAGAAGGGATTCTGTAACCTTAGGA AGCAGATTGAAAACACAGCCCACTTTGGTGTCCCCTGCGTCGTTGCAATCAACCAGTTTGTAACGGACAC ACCCAACGAGCTAGCCCTTCTACAGCAGTTGTCCAAGGAATGTGGAGCCTTTGATGCTGTGGTCTCAAAC CACTGGGCTCTCGGAGGAAAAGGTGCAGTGGACCTGGCTAAGGCTGTAGAGAGGGCCTGCTACCAGCCAA GTGACTTCAAGTTCCTCTATGAACTAGATACTCCAGTTGAAGACAAGATCTCCGCCATTGCCAAAAAGAT CTATGGAGCCGACGGCATTGAACTCTCTGAGGATGCACAGAAGAAGATCAACCTCTACCGTAGCCAGGGC TTCAACGATCTACCCATCTGCATGGCTAAGACGCATCTTTCCTTGTCACATGACCCGAAACTGAAGGGCA CGCCCACTGGGTTCACTCTGCCAATCAGGGATGTCAGAGCCAGTGTAGGGGCAGGATTCCTCTACCCGCT TGTTGGAACGATGAGTACCATGCCTGGGTTATCCACCAGACCTTGCTTCTACGACATTGACATCGACACC GAGACTGAAACCATCTTTGGCCTCTTCTAAGTGTGTCCATCCTTGTTCACTTGTCAATCAAGGAAATTAA GCAGTCATGAAGATTAGCCGTTGATTTGGCATTGTATTCTCATTTGTAAGTCTGTTTTGAACAGGAATGA AATGTTGATTTATCGTGTTGTACCTCACTGTATGCAATGTCTGTGATGTGTACATTATTATTTGTTCTCC TTTTTTAAGTTGCAGGTGTGCTACCATGATTCTTCATAAAGTTTTTAACACTGTGAAGTAGTAACGATTA AAGACTGCAGCATGAAATAGCTGTTCCATAGTGATAAAATTCAAATGGCTCTATGTAGGCACAGCCACGA TATTGCCCTTTAAATAATATATTGAATCAATACACAACAAAGTTTAGTACATGTGAGGTTTGGAAAGTAG GAAAATTGGTAATAAATTTGAATGGTTTTTATCCAATAAGGTGCTGGCAACTGAATGTAAATGTTAACAT TCCCGTAAACACCAGGGTCAAAATCATCATCATTCTAGTGTCTGTGAAAATCATGGTTATTGGGAAAGAC TTGTAAGCCAGCCTGACAATGTAATGTCAAATGTACAGCTTTCAGTGTGTGATACAGAACAGTTCTCAAT CAAGTACAGTAGGTGCTTGAAGCTATCTTTTATTGTGTATTTGGGACAATAATTGTCTATGAAAGTAATG TTTTGTATAGGAAAATAATGTGATAGATTATTTTGGAGTTCTGTATAAAGAATGTTTCATTTACGCTTGA AAACAATGGTAATAAAATGAGAAGATTGTACATGAAATTTATAGAGAAAGGTTGAGAATTAGAGGCTGTG AGTTTTCAAGAATATGATTACATTTTTATTAAAGTATTAAAGAATATGTGTGTTCCTGGTTAATTGTGAT TAAATTTGTTATTTCTAGAATATTGCTTGTTTTACGTTTAACTGAAATTGATGTTTTCCTCTTCCTGAGG TTGATTAAACGTTGTACATGAGTTTGTCATTAAGTACTTCATGTCTCCACTAGGGGGAGGGGGGAGCCAA ATTGAGATTTTATCATCAGACATCATGAGATGCAATTAATTAAATCTACCTTTGGTTAAATGCTGAGAGA GGATAAAACGATGCCTAGAAGAAAGATAAGTTTTCTAAGATGTGCCTTTTATGTATCTTGTATAGGAAAT TGAAATTTGGCAAGTGCAAGTAGAAATAAAAACTGCCAAATCTGAATGATATCATTATTTTGAGGAATAT TCTCCATCAAGGAATGTTGAAAACATCTTTGTGTTAATGGGATTATAATGTGCATGTTATACTTTCCGCC TGAATGTTCCTGGTTAATGATGTAGTACCTGGTAAATGACGTAGTTTCTCATTAAAACTCATTAAACAAG AGAGAAATGAAAATAACAAACATTTCAAATCAATTGTCCTGTCGTTGCATAGATATGAAAAAAGGTAAAT TGGTAAGAGGGATTTGAATAAGTGTTTTTTTTTTTGTTCGTTACTAATCACTGTCAGCAATGAAAAGGTA CTTTCTCTTATTCGCTGATGTTAAATTTTGTTATCTATGACGATGTGAATTGAGTATAAATTATTTAAAT CTTCATTCATTTGTTTTCAAGCACGTCACAATGTATTATTTCTGATTTCGTATATTATATTTCGCTGTTT TGTTCCTTAACCTTATGTGTTTTAATATGGGGATGTAATCCAATAAAAGAATACTGTATGAGAAAGATGT ATTTTTGTTTGATGAAAAATAAAGGTTAACATTATACAATCACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds